Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 120.00131 * 2 1 4 4 O 1.42902 * 109.46641 * 135.00088 * 3 2 1 5 5 C 1.42896 * 113.99829 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47358 * 330.00341 * 5 4 3 7 7 C 1.53002 * 109.47179 * 90.00290 * 5 4 3 8 8 C 1.50703 * 109.47464 * 210.00271 * 5 4 3 9 9 O 1.21282 * 119.99472 * 348.31957 * 8 5 4 10 10 N 1.34770 * 120.00271 * 168.31275 * 8 5 4 11 11 C 1.46926 * 120.62914 * 4.26055 * 10 8 5 12 12 C 1.52760 * 109.00743 * 233.58075 * 11 10 8 13 13 C 1.53041 * 109.38494 * 305.58737 * 12 11 10 14 14 N 1.46501 * 109.45006 * 181.25161 * 13 12 11 15 15 C 1.36939 * 119.99669 * 84.93924 * 14 13 12 16 16 H 1.08002 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00018 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00207 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47111 * 89.99436 * 19 17 15 21 21 H 1.48503 * 109.47141 * 209.99804 * 19 17 15 22 22 H 1.48503 * 109.46710 * 329.99451 * 19 17 15 23 23 C 1.53043 * 109.53441 * 61.24016 * 13 12 11 24 24 C 1.46923 * 120.63375 * 184.53886 * 10 8 5 25 25 H 1.08005 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00374 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99974 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46811 * 15.01124 * 3 2 1 29 29 H 1.08992 * 109.47572 * 255.00455 * 3 2 1 30 30 H 1.09004 * 109.46951 * 296.91744 * 7 5 4 31 31 H 1.08994 * 109.47314 * 56.91676 * 7 5 4 32 32 H 1.08998 * 109.47184 * 176.92018 * 7 5 4 33 33 H 1.08996 * 109.59229 * 353.42091 * 11 10 8 34 34 H 1.09010 * 109.58652 * 113.84547 * 11 10 8 35 35 H 1.09003 * 109.56478 * 185.55817 * 12 11 10 36 36 H 1.08990 * 109.35982 * 65.50270 * 12 11 10 37 37 H 1.08997 * 109.45882 * 301.22233 * 13 12 11 38 38 H 0.96996 * 120.00018 * 264.94177 * 14 13 12 39 39 H 0.97005 * 119.99804 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49440 * 178.67854 * 23 13 12 41 41 H 1.09007 * 109.49746 * 58.58819 * 23 13 12 42 42 H 1.08996 * 109.58810 * 246.16133 * 24 10 8 43 43 H 1.09006 * 109.58624 * 6.44139 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4351 1.0329 6 1 3.9128 2.9319 0.0627 7 6 3.3031 3.3706 2.0818 8 6 5.3202 2.0860 1.4259 9 8 5.5809 0.9700 1.8227 10 7 6.2935 3.0139 1.3361 11 6 5.9776 4.3948 0.9464 12 6 6.8617 4.7933 -0.2340 13 6 8.3301 4.5629 0.1306 14 7 9.1809 4.9726 -0.9895 15 6 9.5541 6.2835 -1.1219 16 1 9.2217 7.0152 -0.4004 17 6 10.3607 6.6717 -2.1828 18 7 10.7199 7.9315 -2.3099 19 14 10.9364 5.4060 -3.4304 20 1 9.9498 5.3170 -4.5366 21 1 12.2563 5.8132 -3.9757 22 1 11.0607 4.0815 -2.7703 23 6 8.5570 3.0787 0.4270 24 6 7.6915 2.6623 1.6203 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2662 29 1 2.4755 1.4869 -0.9926 30 1 2.3015 3.6668 1.7701 31 1 3.2476 2.8545 3.0402 32 1 3.9293 4.2570 2.1822 33 1 4.9295 4.4617 0.6551 34 1 6.1693 5.0642 1.7852 35 1 6.7058 5.8465 -0.4676 36 1 6.6024 4.1856 -1.1008 37 1 8.5819 5.1520 1.0124 38 1 9.4797 4.3154 -1.6372 39 1 11.2832 8.2027 -3.0515 40 1 9.6079 2.9116 0.6637 41 1 8.2818 2.4871 -0.4462 42 1 8.0257 3.1873 2.5151 43 1 7.7733 1.5865 1.7759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204028620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = -42.905175 kcal Electronic energy + Delta-G solvation = -22609.921030 eV Core-core repulsion = 19270.393313 eV Total energy + Delta-G solvation = -3339.527718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43244 -38.40095 -37.24084 -34.74361 -34.32884 -32.46418 -31.59840 -30.47775 -29.71204 -26.55036 -25.51527 -23.85637 -23.08341 -22.01973 -20.54923 -20.26527 -19.12773 -17.77830 -17.41666 -16.75985 -16.22540 -15.60411 -15.34055 -14.93378 -14.67643 -14.20696 -14.04032 -13.72693 -13.66851 -13.45062 -13.10615 -12.96348 -12.56341 -12.47914 -12.29914 -12.09969 -11.90285 -11.68064 -11.21606 -11.10008 -11.05444 -10.93785 -10.60149 -10.38014 -10.29084 -9.93783 -9.68142 -9.64248 -9.48388 -8.98098 -8.59628 -7.34117 -5.82805 -3.18880 1.80416 2.57447 2.76102 3.33714 3.37212 3.42109 3.66224 4.32376 4.54176 4.58193 4.69662 4.72836 4.85041 4.95779 5.03387 5.06461 5.14740 5.16476 5.26200 5.33063 5.42239 5.43216 5.49653 5.54706 5.59629 5.80355 5.81660 5.89322 6.05080 6.11239 6.21177 6.23746 6.30203 6.32638 6.46255 6.72982 6.84192 6.88678 7.40666 7.92493 8.17213 8.36266 9.14370 9.87254 10.06883 11.35308 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.003463 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.749015 B = 8083.373676 C = 8355.970078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.084 3.916 4 O -0.354 6.354 5 C 0.071 3.929 6 H 0.087 0.913 7 C -0.175 4.175 8 C 0.517 3.483 9 O -0.528 6.528 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.153 4.153 13 C 0.184 3.816 14 N -0.748 5.748 15 C -0.245 4.245 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.143 4.143 24 C 0.118 3.882 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.006 -10.973 6.688 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.010 3.990 6 H 0.104 0.896 7 C -0.233 4.233 8 C 0.304 3.696 9 O -0.404 6.404 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.194 4.194 13 C 0.074 3.926 14 N -0.390 5.390 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.182 4.182 24 C -0.004 4.004 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.767 -11.476 7.046 22.294 hybrid contribution 0.408 -0.425 -1.324 1.450 sum -17.359 -11.901 5.721 21.810 Atomic orbital electron populations 1.23827 0.95479 1.02265 1.00351 1.22733 0.95587 0.98241 0.99938 1.21678 0.89012 0.96108 0.92421 1.88065 1.43912 1.35186 1.60053 1.21904 0.89701 0.87203 1.00227 0.89567 1.22347 1.01797 0.99360 0.99771 1.20274 0.86290 0.84767 0.78295 1.90689 1.82803 1.21357 1.45508 1.48110 1.07484 1.10362 1.68080 1.21940 0.99834 0.81615 0.98729 1.22588 0.97816 1.02572 0.96455 1.20133 0.88851 0.91991 0.91625 1.42802 1.59562 1.07572 1.29082 1.19058 1.25316 0.84020 1.09101 0.89157 1.24675 0.99983 0.95803 0.98596 1.69697 1.40801 1.14745 1.32802 0.86560 0.78340 0.81470 0.82202 1.21138 1.21736 1.20304 1.22257 0.99913 0.98144 0.97871 1.21596 0.79217 1.01907 0.97693 0.88420 0.87762 0.86424 0.92520 0.92057 0.91263 0.90965 0.90237 0.90243 0.90892 0.89963 0.92303 0.92436 0.80629 0.93018 0.90363 0.91956 0.91245 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 14.31 29.01 0.42 -0.88 16 2 C -0.15 -1.32 9.89 -36.02 -0.36 -1.67 16 3 C 0.08 0.79 6.16 36.01 0.22 1.01 16 4 O -0.35 -4.55 9.53 -54.87 -0.52 -5.08 16 5 C 0.07 0.81 2.28 -27.88 -0.06 0.74 16 6 H 0.09 0.83 6.90 -51.93 -0.36 0.47 16 7 C -0.18 -1.55 9.12 37.16 0.34 -1.22 16 8 C 0.52 7.50 7.05 -10.99 -0.08 7.43 16 9 O -0.53 -9.69 15.97 -14.08 -0.22 -9.92 16 10 N -0.61 -8.02 2.98 -173.03 -0.52 -8.53 16 11 C 0.10 1.18 5.17 -3.93 -0.02 1.16 16 12 C -0.15 -2.32 5.64 -26.83 -0.15 -2.47 16 13 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 14 N -0.75 -16.80 4.92 -53.38 -0.26 -17.07 16 15 C -0.25 -6.60 10.41 -15.06 -0.16 -6.76 16 16 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 19 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 23 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 24 C 0.12 1.60 6.42 -3.72 -0.02 1.58 16 25 H 0.10 0.58 7.90 -52.48 -0.41 0.17 16 26 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.62 5.89 -51.93 -0.31 0.32 16 33 H 0.08 0.74 4.70 -51.93 -0.24 0.49 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.36 8.12 5.66 -40.82 -0.23 7.89 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.27 7.03 -51.93 -0.37 0.90 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -33.28 345.40 -7.53 -40.81 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.96 Total: 5.71 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.30 Total: -0.27 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.00 Total: -53.43 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.75 Total: -14.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.28 -7.53 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204028620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.098 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds