Wall clock time and date at job start Tue Mar 31 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 120.00131 * 2 1 4 4 O 1.42902 * 109.46641 * 135.00088 * 3 2 1 5 5 C 1.42896 * 113.99829 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47358 * 330.00341 * 5 4 3 7 7 C 1.53002 * 109.47179 * 90.00290 * 5 4 3 8 8 C 1.50703 * 109.47464 * 210.00271 * 5 4 3 9 9 O 1.21282 * 119.99472 * 348.31957 * 8 5 4 10 10 N 1.34770 * 120.00271 * 168.31275 * 8 5 4 11 11 C 1.46926 * 120.62914 * 4.26055 * 10 8 5 12 12 C 1.52760 * 109.00743 * 233.58075 * 11 10 8 13 13 C 1.53041 * 109.38494 * 305.58737 * 12 11 10 14 14 N 1.46501 * 109.45006 * 181.25161 * 13 12 11 15 15 C 1.36939 * 119.99669 * 84.93924 * 14 13 12 16 16 H 1.08002 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00018 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00207 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47111 * 89.99436 * 19 17 15 21 21 H 1.48503 * 109.47141 * 209.99804 * 19 17 15 22 22 H 1.48503 * 109.46710 * 329.99451 * 19 17 15 23 23 C 1.53043 * 109.53441 * 61.24016 * 13 12 11 24 24 C 1.46923 * 120.63375 * 184.53886 * 10 8 5 25 25 H 1.08005 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00374 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99974 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46811 * 15.01124 * 3 2 1 29 29 H 1.08992 * 109.47572 * 255.00455 * 3 2 1 30 30 H 1.09004 * 109.46951 * 296.91744 * 7 5 4 31 31 H 1.08994 * 109.47314 * 56.91676 * 7 5 4 32 32 H 1.08998 * 109.47184 * 176.92018 * 7 5 4 33 33 H 1.08996 * 109.59229 * 353.42091 * 11 10 8 34 34 H 1.09010 * 109.58652 * 113.84547 * 11 10 8 35 35 H 1.09003 * 109.56478 * 185.55817 * 12 11 10 36 36 H 1.08990 * 109.35982 * 65.50270 * 12 11 10 37 37 H 1.08997 * 109.45882 * 301.22233 * 13 12 11 38 38 H 0.96996 * 120.00018 * 264.94177 * 14 13 12 39 39 H 0.97005 * 119.99804 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49440 * 178.67854 * 23 13 12 41 41 H 1.09007 * 109.49746 * 58.58819 * 23 13 12 42 42 H 1.08996 * 109.58810 * 246.16133 * 24 10 8 43 43 H 1.09006 * 109.58624 * 6.44139 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4351 1.0329 6 1 3.9128 2.9319 0.0627 7 6 3.3031 3.3706 2.0818 8 6 5.3202 2.0860 1.4259 9 8 5.5809 0.9700 1.8227 10 7 6.2935 3.0139 1.3361 11 6 5.9776 4.3948 0.9464 12 6 6.8617 4.7933 -0.2340 13 6 8.3301 4.5629 0.1306 14 7 9.1809 4.9726 -0.9895 15 6 9.5541 6.2835 -1.1219 16 1 9.2217 7.0152 -0.4004 17 6 10.3607 6.6717 -2.1828 18 7 10.7199 7.9315 -2.3099 19 14 10.9364 5.4060 -3.4304 20 1 9.9498 5.3170 -4.5366 21 1 12.2563 5.8132 -3.9757 22 1 11.0607 4.0815 -2.7703 23 6 8.5570 3.0787 0.4270 24 6 7.6915 2.6623 1.6203 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3855 2.1161 0.2662 29 1 2.4755 1.4869 -0.9926 30 1 2.3015 3.6668 1.7701 31 1 3.2476 2.8545 3.0402 32 1 3.9293 4.2570 2.1822 33 1 4.9295 4.4617 0.6551 34 1 6.1693 5.0642 1.7852 35 1 6.7058 5.8465 -0.4676 36 1 6.6024 4.1856 -1.1008 37 1 8.5819 5.1520 1.0124 38 1 9.4797 4.3154 -1.6372 39 1 11.2832 8.2027 -3.0515 40 1 9.6079 2.9116 0.6637 41 1 8.2818 2.4871 -0.4462 42 1 8.0257 3.1873 2.5151 43 1 7.7733 1.5865 1.7759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204028620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:53 Heat of formation + Delta-G solvation = -64.651898 kcal Electronic energy + Delta-G solvation = -22610.864039 eV Core-core repulsion = 19270.393313 eV Total energy + Delta-G solvation = -3340.470726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50770 -39.38572 -38.44341 -36.29812 -35.04009 -34.02854 -32.88260 -31.64929 -31.15579 -27.28451 -26.80431 -25.10926 -24.31523 -23.44070 -21.73566 -21.05651 -20.33515 -19.43012 -18.55432 -17.71869 -17.17613 -16.73992 -16.48594 -16.24720 -15.84738 -15.64171 -15.13433 -15.02114 -14.76215 -14.65467 -14.30915 -14.06751 -13.81723 -13.51480 -13.35096 -13.24794 -12.99304 -12.90082 -12.58049 -12.48016 -12.20543 -12.05873 -12.02120 -11.84952 -11.77626 -11.34148 -11.20722 -10.93398 -10.56342 -10.25925 -9.73160 -9.29874 -8.00583 -5.33322 1.18461 1.39078 1.40373 1.47852 1.49815 1.79503 2.49301 2.85383 3.30989 3.39832 3.53404 3.78586 3.91463 3.98624 4.01137 4.09657 4.14174 4.20803 4.30500 4.38353 4.40531 4.56335 4.57689 4.66217 4.70982 4.76920 4.81911 4.83390 4.98162 5.00050 5.04359 5.20168 5.25566 5.45484 5.58393 5.65778 5.70150 5.80009 6.08059 6.23700 6.36641 7.08677 7.09640 7.86509 8.04284 9.20696 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.003463 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.749015 B = 8083.373676 C = 8355.970078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.081 3.919 4 O -0.385 6.385 5 C 0.071 3.929 6 H 0.108 0.892 7 C -0.170 4.170 8 C 0.512 3.488 9 O -0.574 6.574 10 N -0.603 5.603 11 C 0.108 3.892 12 C -0.145 4.145 13 C 0.175 3.825 14 N -0.753 5.753 15 C -0.222 4.222 16 H 0.063 0.937 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.949 3.051 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.255 1.255 23 C -0.131 4.131 24 C 0.121 3.879 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.362 0.638 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 -11.743 6.790 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C 0.005 3.995 4 O -0.304 6.304 5 C 0.010 3.990 6 H 0.125 0.875 7 C -0.227 4.227 8 C 0.300 3.700 9 O -0.453 6.453 10 N -0.336 5.336 11 C -0.014 4.014 12 C -0.185 4.185 13 C 0.067 3.933 14 N -0.396 5.396 15 C -0.353 4.353 16 H 0.081 0.919 17 C -0.255 4.255 18 N -0.634 5.634 19 Si 0.778 3.222 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.180 1.180 23 C -0.170 4.170 24 C -0.001 4.001 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.195 0.805 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.836 -12.273 7.175 24.405 hybrid contribution 0.956 -0.193 -1.270 1.601 sum -18.881 -12.466 5.905 23.383 Atomic orbital electron populations 1.24061 0.94812 1.03607 0.97483 1.22750 0.96376 0.97808 1.02649 1.21860 0.88625 0.96977 0.92025 1.88036 1.44952 1.36249 1.61156 1.22024 0.87695 0.87363 1.01919 0.87462 1.22345 1.03223 0.98859 0.98287 1.20958 0.87678 0.84054 0.77287 1.90665 1.83710 1.23269 1.47702 1.48175 1.07179 1.10856 1.67430 1.22021 1.00778 0.80793 0.97811 1.22389 0.96437 1.01774 0.97935 1.20406 0.89621 0.93407 0.89827 1.42859 1.60423 1.05832 1.30465 1.19033 1.23395 0.85386 1.07473 0.91855 1.25428 1.01248 0.97657 1.01202 1.69866 1.42608 1.17058 1.33906 0.85489 0.77185 0.79863 0.79686 1.20726 1.22670 1.17971 1.22115 1.00452 0.96042 0.98403 1.21530 0.79436 1.01707 0.97459 0.86804 0.86641 0.87864 0.90311 0.91658 0.88889 0.92312 0.88916 0.87069 0.89190 0.91269 0.92579 0.93016 0.80477 0.93495 0.90266 0.92374 0.89692 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 14.31 67.78 0.97 -0.97 16 2 C -0.18 -2.98 9.89 25.65 0.25 -2.72 16 3 C 0.08 1.36 6.16 71.24 0.44 1.80 16 4 O -0.38 -9.38 9.53 -130.21 -1.24 -10.62 16 5 C 0.07 1.44 2.28 29.85 0.07 1.51 16 6 H 0.11 1.68 6.90 -2.38 -0.02 1.67 16 7 C -0.17 -2.46 9.12 71.98 0.66 -1.80 16 8 C 0.51 14.05 7.05 87.66 0.62 14.67 16 9 O -0.57 -20.95 15.97 15.74 0.25 -20.70 16 10 N -0.60 -14.63 2.98 -819.75 -2.44 -17.07 16 11 C 0.11 2.18 5.17 86.22 0.45 2.63 16 12 C -0.14 -4.08 5.64 30.53 0.17 -3.91 16 13 C 0.18 5.92 2.73 45.02 0.12 6.04 16 14 N -0.75 -33.06 4.92 -322.81 -1.59 -34.65 16 15 C -0.22 -11.99 10.41 84.03 0.87 -11.12 16 16 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 17 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16 19 Si 0.95 44.78 27.74 68.60 1.90 46.68 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 23 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 24 C 0.12 3.10 6.42 86.36 0.55 3.65 16 25 H 0.11 0.98 7.90 -2.91 -0.02 0.96 16 26 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 27 H 0.10 1.96 8.06 -2.91 -0.02 1.93 16 28 H 0.08 0.94 7.66 -2.38 -0.02 0.92 16 29 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 30 H 0.09 0.92 7.94 -2.39 -0.02 0.91 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.07 5.89 -2.39 -0.01 1.06 16 33 H 0.11 1.60 4.70 -2.39 -0.01 1.58 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.36 15.66 5.66 -92.71 -0.52 15.14 16 39 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 40 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 2.27 7.03 -2.38 -0.02 2.25 16 Total: -1.00 -73.69 345.40 3.40 -70.29 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.40 Total: 24.44 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.81 Total: 2.98 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.73 Total: -113.08 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.99 Total: -31.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -73.69 3.40 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204028620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.643 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds