Wall clock time and date at job start Tue Mar 31 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20760 * 119.99869 * 2 1 4 4 C 1.50696 * 120.00041 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47335 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47633 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47494 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99669 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00191 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00030 * 180.02562 * 9 7 6 11 11 H 1.08995 * 110.88676 * 37.42987 * 10 9 7 12 12 C 1.54913 * 111.00373 * 273.54696 * 10 9 7 13 13 N 1.47422 * 104.83247 * 204.87955 * 12 10 9 14 14 C 1.36932 * 125.64904 * 204.08989 * 13 12 10 15 15 H 1.08001 * 120.00172 * 168.15896 * 14 13 12 16 16 C 1.38810 * 119.99990 * 348.16681 * 14 13 12 17 17 N 1.31624 * 119.99867 * 326.24876 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 145.98140 * 16 14 13 19 19 H 1.48506 * 109.47282 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47535 * 119.99869 * 18 16 14 21 21 H 1.48503 * 109.47098 * 239.99494 * 18 16 14 22 22 C 1.47024 * 108.70201 * 24.35686 * 13 12 10 23 23 C 1.54334 * 107.26646 * 358.58505 * 22 13 12 24 24 H 1.09004 * 110.66854 * 96.52150 * 23 22 13 25 25 C 1.52995 * 110.85086 * 219.67074 * 23 22 13 26 26 H 1.09000 * 109.46629 * 239.99995 * 1 2 3 27 27 H 1.09000 * 109.47342 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 119.99989 * 1 2 3 29 29 H 1.09006 * 109.47401 * 59.99542 * 4 2 1 30 30 H 1.09001 * 109.47498 * 300.00039 * 4 2 1 31 31 H 1.09008 * 109.47400 * 59.99978 * 5 4 2 32 32 H 1.08997 * 109.47481 * 300.00320 * 5 4 2 33 33 H 1.08998 * 109.46662 * 59.99557 * 6 5 4 34 34 H 1.08997 * 109.46928 * 300.00633 * 6 5 4 35 35 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 36 36 H 1.08998 * 110.36702 * 86.04149 * 12 10 9 37 37 H 1.08997 * 110.45893 * 323.76573 * 12 10 9 38 38 H 0.96994 * 119.99575 * 353.97716 * 17 16 14 39 39 H 1.09007 * 109.88319 * 118.13184 * 22 13 12 40 40 H 1.09002 * 109.88170 * 239.29426 * 22 13 12 41 41 H 1.09000 * 109.47522 * 173.69225 * 25 23 22 42 42 H 1.09001 * 109.47262 * 293.69322 * 25 23 22 43 43 H 1.09001 * 109.47218 * 53.69162 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0023 7 6 6.0114 -2.0752 -0.0035 8 8 6.4156 -0.9317 -0.0029 9 7 6.8872 -3.0996 -0.0042 10 6 8.3275 -2.8318 -0.0047 11 1 8.5621 -1.9660 0.6144 12 6 8.8565 -2.6420 -1.4483 13 7 10.2867 -2.9918 -1.3753 14 6 11.2598 -2.5558 -2.2344 15 1 12.3013 -2.7082 -1.9927 16 6 10.9076 -1.9179 -3.4158 17 7 9.8114 -2.2712 -4.0530 18 14 11.9854 -0.5530 -4.0976 19 1 13.1474 -0.3432 -3.1969 20 1 12.4687 -0.9324 -5.4495 21 1 11.1968 0.7020 -4.1881 22 6 10.4941 -3.8914 -0.2311 23 6 9.1260 -4.0791 0.4581 24 1 8.6445 -4.9946 0.1144 25 6 9.2798 -4.0892 1.9802 26 1 -0.3632 -0.5138 0.8900 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8899 29 1 1.9972 -1.8763 -0.8908 30 1 1.9972 -1.8771 0.8891 31 1 4.0284 -0.4541 0.8890 32 1 4.0277 -0.4537 -0.8910 33 1 4.2660 -2.9215 -0.8926 34 1 4.2668 -2.9227 0.8873 35 1 6.5639 -4.0141 -0.0043 36 1 8.7350 -1.6057 -1.7636 37 1 8.3371 -3.3101 -2.1353 38 1 9.2965 -3.0338 -3.7461 39 1 10.8711 -4.8532 -0.5792 40 1 11.2012 -3.4449 0.4681 41 1 8.2941 -4.1100 2.4450 42 1 9.8427 -4.9723 2.2827 43 1 9.8123 -3.1927 2.2976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205977727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:36 Heat of formation + Delta-G solvation = -71.594226 kcal Electronic energy + Delta-G solvation = -22252.225731 eV Core-core repulsion = 18911.453963 eV Total energy + Delta-G solvation = -3340.771768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.89072 -39.44842 -37.74345 -34.39240 -34.03997 -32.77615 -30.99951 -30.36734 -28.75558 -27.23611 -25.50255 -23.82103 -22.43476 -20.52717 -20.16670 -19.82287 -19.42927 -17.49880 -16.85976 -16.28760 -16.12580 -15.67592 -15.15735 -15.03788 -14.52836 -13.96623 -13.78267 -13.64090 -13.27202 -13.06016 -12.90859 -12.78822 -12.51563 -12.46302 -12.06458 -12.05040 -11.74260 -11.54235 -11.46204 -10.87967 -10.82495 -10.64800 -10.60501 -10.39332 -10.05503 -9.96353 -9.90325 -9.63438 -9.49030 -8.62058 -8.28005 -6.92788 -6.10981 -3.04275 1.76267 2.91826 3.35681 3.57481 3.63192 3.75216 3.85698 4.59101 4.65085 4.75627 4.79662 4.91351 4.95536 5.03845 5.08290 5.21006 5.24918 5.28855 5.32968 5.35354 5.41640 5.51532 5.67277 5.75532 5.81871 5.89234 6.00922 6.03019 6.08112 6.24428 6.28845 6.31939 6.60158 6.66481 6.83322 7.03660 7.13362 7.31687 7.79004 7.83971 8.50584 8.55221 9.04317 9.86270 10.40697 11.23519 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.003757 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.057116 B = 7451.533845 C = 8716.204282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.348 3.652 3 O -0.451 6.451 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.139 4.139 7 C 0.507 3.493 8 O -0.533 6.533 9 N -0.719 5.719 10 C 0.130 3.870 11 H 0.093 0.907 12 C 0.141 3.859 13 N -0.601 5.601 14 C -0.345 4.345 15 H 0.068 0.932 16 C -0.021 4.021 17 N -0.907 5.907 18 Si 1.060 2.940 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.289 1.289 22 C 0.142 3.858 23 C -0.110 4.110 24 H 0.075 0.925 25 C -0.137 4.137 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.267 0.733 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -5.339 11.550 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.223 3.777 3 O -0.324 6.324 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.179 4.179 7 C 0.293 3.707 8 O -0.409 6.409 9 N -0.370 5.370 10 C 0.025 3.975 11 H 0.111 0.889 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.223 4.223 17 N -0.547 5.547 18 Si 0.890 3.110 19 H -0.218 1.218 20 H -0.223 1.223 21 H -0.215 1.215 22 C 0.016 3.984 23 C -0.129 4.129 24 H 0.093 0.907 25 C -0.195 4.195 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.888 -2.762 10.294 19.970 hybrid contribution -0.330 -1.939 1.096 2.252 sum -17.218 -4.700 11.390 21.173 Atomic orbital electron populations 1.22333 0.94658 1.04873 1.04388 1.24648 0.91865 0.90505 0.70667 1.90468 1.71972 1.35153 1.34811 1.22160 0.96752 0.97480 1.04603 1.21157 0.91373 0.96096 1.05028 1.21663 0.92191 0.99906 1.04123 1.20620 0.88510 0.85348 0.76191 1.90750 1.80242 1.21306 1.48592 1.45945 1.06652 1.08919 1.75479 1.22354 0.77990 0.97744 0.99429 0.88940 1.21768 0.85343 0.99728 0.91709 1.44480 1.03979 1.53325 1.31096 1.19698 0.87432 1.38721 1.01356 0.91404 1.25671 1.00841 1.02964 0.92851 1.70735 1.19161 1.27897 1.36861 0.83636 0.75080 0.77154 0.75120 1.21762 1.22283 1.21549 1.21357 0.93228 0.93714 0.90140 1.22416 0.97647 0.97358 0.95505 0.90705 1.21734 1.01153 1.01893 0.94670 0.89122 0.90172 0.89036 0.88292 0.88440 0.90650 0.90395 0.88890 0.89145 0.77115 0.92568 0.95882 0.92175 0.95800 0.95229 0.93014 0.92674 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.11 10.26 36.01 0.37 -0.74 16 2 C 0.35 3.21 7.27 -29.04 -0.21 3.00 16 3 O -0.45 -6.47 16.71 6.00 0.10 -6.37 16 4 C -0.17 -1.26 5.64 -27.89 -0.16 -1.42 16 5 C -0.10 -1.15 3.79 -26.73 -0.10 -1.25 16 6 C -0.14 -1.43 5.70 -27.88 -0.16 -1.59 16 7 C 0.51 8.07 7.83 -10.99 -0.09 7.98 16 8 O -0.53 -11.29 15.73 5.56 0.09 -11.20 16 9 N -0.72 -10.77 5.23 -51.73 -0.27 -11.04 16 10 C 0.13 2.46 2.77 -65.78 -0.18 2.28 16 11 H 0.09 1.94 7.63 -51.93 -0.40 1.54 16 12 C 0.14 3.47 5.03 -2.53 -0.01 3.46 16 13 N -0.60 -15.82 3.33 -170.06 -0.57 -16.39 16 14 C -0.35 -10.12 9.97 -15.06 -0.15 -10.27 16 15 H 0.07 1.98 8.02 -52.49 -0.42 1.56 16 16 C -0.02 -0.62 4.96 -17.43 -0.09 -0.71 16 17 N -0.91 -28.37 12.86 55.49 0.71 -27.65 16 18 Si 1.06 26.64 30.03 -169.99 -5.10 21.54 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 C 0.14 2.98 6.85 -3.06 -0.02 2.96 16 23 C -0.11 -1.80 3.16 -88.78 -0.28 -2.08 16 24 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 25 C -0.14 -1.81 9.16 37.16 0.34 -1.47 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.02 8.06 -51.92 -0.42 0.60 16 32 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.40 4.47 8.52 -40.82 -0.35 4.12 16 36 H 0.06 1.62 7.81 -51.93 -0.41 1.21 16 37 H 0.02 0.60 7.02 -51.93 -0.36 0.23 16 38 H 0.27 8.37 6.43 -40.82 -0.26 8.11 16 39 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.03 0.62 7.77 -51.93 -0.40 0.22 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -37.71 354.35 -7.73 -45.44 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.29 Total: 0.20 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.74 Total: 0.13 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.12 Total: -55.08 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.19 Total: -17.57 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -5.10 Total: 21.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.71 -7.73 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205977727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.155 kcal (2) G-P(sol) polarization free energy of solvation -37.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds