Wall clock time and date at job start Tue Mar 31 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.88977 * 2 1 4 4 C 1.54919 * 111.00290 * 236.12152 * 2 1 3 5 5 N 1.47426 * 104.83230 * 204.87998 * 4 2 1 6 6 C 1.36931 * 125.64564 * 204.09126 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72206 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48508 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 119.99997 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00044 * 10 8 6 14 14 C 1.47021 * 108.70417 * 24.35268 * 5 4 2 15 15 C 1.54339 * 107.26633 * 358.58904 * 14 5 4 16 16 H 1.08994 * 110.67130 * 96.51663 * 15 14 5 17 17 N 1.46498 * 110.84969 * 219.67238 * 15 14 5 18 18 C 1.34781 * 119.99967 * 268.68921 * 17 15 14 19 19 O 1.21276 * 119.99691 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00034 * 179.97438 * 18 17 15 21 21 O 1.42891 * 109.47223 * 179.97438 * 20 18 17 22 22 C 1.42902 * 114.00400 * 179.97438 * 21 20 18 23 23 C 1.52997 * 109.47299 * 180.02562 * 22 21 20 24 24 C 1.52997 * 117.50372 * 243.74884 * 23 22 21 25 25 C 1.53002 * 117.49560 * 175.08715 * 23 22 21 26 26 H 1.08996 * 109.47165 * 182.42602 * 1 2 3 27 27 H 1.09002 * 109.46767 * 302.42766 * 1 2 3 28 28 H 1.09002 * 109.47184 * 62.42047 * 1 2 3 29 29 H 1.09003 * 110.36295 * 86.03825 * 4 2 1 30 30 H 1.09001 * 110.36644 * 323.71694 * 4 2 1 31 31 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.88280 * 118.13142 * 14 5 4 33 33 H 1.09001 * 109.88287 * 239.29807 * 14 5 4 34 34 H 0.97003 * 120.00183 * 88.69064 * 17 15 14 35 35 H 1.09002 * 109.47461 * 300.00540 * 20 18 17 36 36 H 1.09011 * 109.46659 * 60.00162 * 20 18 17 37 37 H 1.08997 * 109.47244 * 300.00918 * 22 21 20 38 38 H 1.09000 * 109.46695 * 60.00599 * 22 21 20 39 39 H 1.08998 * 115.54875 * 29.42667 * 23 22 21 40 40 H 1.09002 * 117.49435 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.50283 * 145.02019 * 24 23 22 42 42 H 1.09002 * 117.49541 * 214.97920 * 25 23 22 43 43 H 1.08996 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2007 5 7 3.4275 -1.2421 -0.7743 6 6 4.4641 -1.5650 -1.6086 7 1 4.3331 -1.5100 -2.6792 8 6 5.6856 -1.9572 -1.0782 9 7 5.8455 -2.0238 0.2265 10 14 7.1022 -2.3904 -2.2162 11 1 6.6678 -2.2365 -3.6279 12 1 8.2473 -1.4837 -1.9484 13 1 7.5172 -3.7960 -1.9770 14 6 3.4667 -1.2786 0.6949 15 6 2.0870 -0.8079 1.2019 16 1 1.4464 -1.6616 1.4226 17 7 2.2296 0.0495 2.3812 18 6 2.2020 -0.4919 3.6152 19 8 2.0597 -1.6888 3.7492 20 6 2.3492 0.3900 4.8283 21 8 2.2874 -0.4112 6.0099 22 6 2.4181 0.3319 7.2235 23 6 2.3383 -0.6223 8.4169 24 6 1.1634 -0.4503 9.3817 25 6 2.5728 -0.0331 9.8093 26 1 -0.3633 -1.0267 0.0435 27 1 -0.3633 0.5511 0.8675 28 1 -0.3633 0.4758 -0.9109 29 1 2.1553 -0.1713 -2.0840 30 1 1.4522 -1.6702 -1.4028 31 1 6.6989 -2.2982 0.5972 32 1 3.6617 -2.2955 1.0354 33 1 4.2432 -0.6073 1.0619 34 1 2.3437 1.0068 2.2740 35 1 3.3086 0.9058 4.7884 36 1 1.5428 1.1233 4.8444 37 1 3.3792 0.8458 7.2332 38 1 1.6136 1.0645 7.2893 39 1 2.6942 -1.6360 8.2328 40 1 0.4470 0.3424 9.1660 41 1 0.7465 -1.3508 9.8327 42 1 3.0825 -0.6595 10.5414 43 1 2.7843 1.0341 9.8752 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206197581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:00 Heat of formation + Delta-G solvation = -31.883166 kcal Electronic energy + Delta-G solvation = -22222.445455 eV Core-core repulsion = 18883.395688 eV Total energy + Delta-G solvation = -3339.049767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62542 -38.42840 -37.45155 -36.34779 -33.86071 -32.61552 -30.35840 -29.33465 -27.56523 -26.05748 -25.52203 -23.47845 -22.64467 -21.06870 -20.63611 -19.99346 -19.54141 -17.22915 -16.94525 -16.57490 -16.32700 -15.75107 -15.35802 -14.87851 -14.51317 -14.09833 -13.88716 -13.69486 -13.15090 -12.77961 -12.73656 -12.55168 -12.38847 -11.88827 -11.79465 -11.69103 -11.33249 -11.27918 -11.00180 -10.77914 -10.70407 -10.59770 -10.47909 -10.35261 -9.97207 -9.90382 -9.68841 -9.67085 -9.37565 -8.60774 -8.44185 -6.81467 -5.67108 -3.02457 2.92023 2.99768 3.41911 3.46955 3.50012 3.53919 3.99343 4.51917 4.57937 4.63471 4.84663 4.93266 5.05579 5.06367 5.13233 5.22331 5.28215 5.33015 5.35899 5.43650 5.46169 5.56826 5.61965 5.77663 5.83221 5.98288 6.00521 6.01374 6.16612 6.21942 6.36231 6.50583 6.63865 6.78895 6.92904 7.02562 7.59252 7.61494 7.86786 7.92928 8.27773 8.62097 9.23771 9.84518 10.49459 11.43531 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.003523 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.230969 B = 7946.276162 C = 9151.427743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.172 3.828 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.518 6.518 20 C 0.046 3.954 21 O -0.358 6.358 22 C 0.091 3.909 23 C -0.151 4.151 24 C -0.178 4.178 25 C -0.175 4.175 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.022 0.978 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 9.940 13.221 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.364 5.364 18 C 0.296 3.704 19 O -0.393 6.393 20 C -0.034 4.034 21 O -0.276 6.276 22 C 0.015 3.985 23 C -0.170 4.170 24 C -0.215 4.215 25 C -0.212 4.212 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.890 8.768 13.337 18.777 hybrid contribution 0.996 0.554 -0.552 1.266 sum -8.894 9.322 12.785 18.151 Atomic orbital electron populations 1.21694 0.95055 1.01773 1.00938 1.22617 0.94804 0.99501 0.96426 0.90469 1.21588 0.87631 0.95068 0.94319 1.44425 1.07867 1.79208 1.01819 1.19093 0.89145 1.38617 0.88940 0.90271 1.24840 0.97881 1.01778 0.96016 1.69987 1.23984 1.53389 1.09201 0.86045 0.82392 0.77766 0.79547 1.20514 1.21813 1.21738 1.21486 0.90133 1.00387 0.83338 1.22504 1.00336 0.92765 0.82678 0.89313 1.45794 1.74367 1.10955 1.05299 1.20076 0.77343 0.88920 0.84030 1.90735 1.47332 1.15163 1.86026 1.22209 1.02231 0.93446 0.85530 1.88027 1.94320 1.33085 1.12203 1.22049 0.99996 0.92990 0.83504 1.22126 1.03896 1.01508 0.89432 1.23077 0.91354 1.03441 1.03594 1.22984 0.99710 1.01522 0.96945 0.92608 0.93178 0.92754 0.93954 0.96037 0.93781 0.93471 0.93077 0.77098 0.90264 0.90692 0.92673 0.93169 0.86524 0.88729 0.88582 0.88386 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.30 37.16 0.35 -1.48 16 2 C -0.11 -1.89 3.27 -88.46 -0.29 -2.18 16 3 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 4 C 0.14 2.87 6.70 -2.52 -0.02 2.85 16 5 N -0.61 -15.68 3.39 -170.06 -0.58 -16.26 16 6 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.77 10.31 55.49 0.57 -27.20 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.17 4.33 5.13 -3.06 -0.02 4.32 16 15 C 0.12 2.36 2.78 -66.09 -0.18 2.17 16 16 H 0.09 1.85 7.42 -51.93 -0.39 1.47 16 17 N -0.71 -11.41 5.11 -52.03 -0.27 -11.68 16 18 C 0.51 8.90 7.91 -10.98 -0.09 8.81 16 19 O -0.52 -11.68 16.14 -14.35 -0.23 -11.91 16 20 C 0.05 0.59 6.42 36.00 0.23 0.82 16 21 O -0.36 -5.31 9.88 -55.14 -0.54 -5.85 16 22 C 0.09 0.96 6.22 37.16 0.23 1.19 16 23 C -0.15 -1.54 6.05 -90.62 -0.55 -2.09 16 24 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 25 C -0.17 -1.34 10.25 -26.69 -0.27 -1.62 16 26 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 1.39 7.53 -51.93 -0.39 1.00 16 33 H 0.05 1.40 7.24 -51.93 -0.38 1.02 16 34 H 0.40 4.94 8.56 -40.82 -0.35 4.59 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 39 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -35.01 354.06 -9.22 -44.23 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.36 Total: 1.83 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.13 Total: 4.07 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.27 Total: -55.14 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.78 Total: -17.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.01 -9.22 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206197581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.352 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds