Wall clock time and date at job start Tue Mar 31 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99930 * 2 1 4 4 C 1.52996 * 109.46946 * 239.99942 * 3 2 1 5 5 O 1.42900 * 109.46869 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.46912 * 119.99926 * 3 2 1 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 3 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.88668 * 31.11658 * 10 9 7 12 12 C 1.54912 * 111.00294 * 267.19571 * 10 9 7 13 13 N 1.47430 * 104.83145 * 204.91872 * 12 10 9 14 14 C 1.36936 * 125.64437 * 204.08660 * 13 12 10 15 15 H 1.08002 * 119.99642 * 180.02562 * 14 13 12 16 16 C 1.38806 * 120.00123 * 0.04271 * 14 13 12 17 17 N 1.31618 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47212 * 90.00151 * 18 16 14 20 20 H 1.48506 * 109.46782 * 210.00196 * 18 16 14 21 21 H 1.48496 * 109.46777 * 330.00006 * 18 16 14 22 22 C 1.47018 * 108.70172 * 24.12303 * 13 12 10 23 23 C 1.54322 * 107.27313 * 358.94451 * 22 13 12 24 24 H 1.08996 * 110.72180 * 96.17334 * 23 22 13 25 25 C 1.53004 * 110.87141 * 219.37169 * 23 22 13 26 26 H 1.08004 * 119.99893 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99949 * 180.02562 * 1 2 3 28 28 H 1.07992 * 119.99613 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.47554 * 299.99877 * 4 3 2 30 30 H 1.09004 * 109.47108 * 60.00127 * 4 3 2 31 31 H 1.09000 * 109.46870 * 180.02562 * 4 3 2 32 32 H 0.96698 * 114.00516 * 60.00522 * 5 3 2 33 33 H 1.09002 * 109.47398 * 300.00078 * 6 3 2 34 34 H 1.09001 * 109.47194 * 60.00258 * 6 3 2 35 35 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 36 36 H 1.09005 * 110.36601 * 323.74810 * 12 10 9 37 37 H 1.08990 * 110.37277 * 86.07465 * 12 10 9 38 38 H 0.97005 * 120.00153 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.88045 * 239.52671 * 22 13 12 40 40 H 1.09003 * 109.88346 * 118.36320 * 22 13 12 41 41 H 1.08998 * 109.47365 * 173.61201 * 25 23 22 42 42 H 1.09007 * 109.47295 * 293.61007 * 25 23 22 43 43 H 1.09002 * 109.47030 * 53.60732 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3862 1.2493 7 6 3.6971 2.6910 1.2490 8 8 3.5462 3.4783 0.3389 9 7 4.5399 2.9826 2.2595 10 6 5.2724 4.2513 2.2595 11 1 4.6943 5.0338 1.7680 12 6 6.6637 4.0891 1.5978 13 7 7.4872 5.1631 2.1825 14 6 8.5998 5.7179 1.6086 15 1 9.1367 6.5031 2.1201 16 6 9.0375 5.2713 0.3694 17 7 8.3828 4.3149 -0.2543 18 14 10.5558 6.0276 -0.4132 19 1 11.7604 5.2685 0.0086 20 1 10.4294 5.9739 -1.8919 21 1 10.6844 7.4417 0.0216 22 6 6.9164 5.5392 3.4841 23 6 5.6604 4.6694 3.7023 24 1 5.8978 3.7941 4.3069 25 6 4.5389 5.4841 4.3499 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.6514 0.5578 -1.2493 30 1 2.3164 1.3284 -2.1392 31 1 3.4885 2.3299 -1.2490 32 1 0.5439 2.4031 0.7659 33 1 2.3165 1.3284 2.1393 34 1 3.6515 0.5577 1.2493 35 1 4.6609 2.3526 2.9871 36 1 7.0866 3.1135 1.8380 37 1 6.5873 4.2148 0.5179 38 1 8.6884 4.0030 -1.1205 39 1 6.6404 6.5937 3.4771 40 1 7.6412 5.3489 4.2757 41 1 3.6301 4.8837 4.3897 42 1 4.8322 5.7668 5.3609 43 1 4.3554 6.3824 3.7603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206914329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:19 Heat of formation + Delta-G solvation = -39.785654 kcal Electronic energy + Delta-G solvation = -23128.574660 eV Core-core repulsion = 19789.182215 eV Total energy + Delta-G solvation = -3339.392445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92771 -38.31270 -37.06757 -33.83403 -33.04477 -32.59534 -31.23650 -30.33628 -28.57826 -26.99146 -25.58528 -23.68749 -22.66690 -20.52225 -20.02544 -19.68219 -19.40171 -17.23545 -16.89316 -16.30203 -15.87791 -15.34102 -15.18785 -14.70824 -14.29122 -13.73867 -13.62665 -13.10498 -12.92927 -12.80237 -12.47844 -12.29942 -12.23778 -12.04550 -11.69903 -11.60172 -11.46303 -11.20080 -11.09779 -11.03283 -10.76529 -10.58340 -10.30515 -10.18206 -9.94870 -9.74733 -9.70656 -9.58024 -9.13368 -8.62205 -8.34113 -6.80701 -5.60384 -3.04002 2.03563 3.08996 3.42861 3.47462 3.50388 3.56697 4.28003 4.52061 4.64743 4.74120 4.95356 5.10156 5.13757 5.30596 5.34405 5.47313 5.50349 5.56870 5.63168 5.70320 5.79018 5.97707 5.99524 6.06908 6.13178 6.18593 6.29308 6.33879 6.40554 6.48638 6.52564 6.67716 6.69763 6.89543 7.02956 7.50632 7.65194 7.70824 7.89751 8.01428 8.41242 8.74494 9.24748 9.86013 10.49421 11.42371 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.004490 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.899186 B = 6234.349870 C = 7333.484737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.182 4.182 3 C 0.177 3.823 4 C -0.149 4.149 5 O -0.536 6.536 6 C -0.165 4.165 7 C 0.510 3.490 8 O -0.513 6.513 9 N -0.718 5.718 10 C 0.120 3.880 11 H 0.092 0.908 12 C 0.149 3.851 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.918 5.918 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.141 3.859 23 C -0.112 4.112 24 H 0.072 0.928 25 C -0.136 4.136 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.365 0.635 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.392 0.608 36 H 0.011 0.989 37 H 0.111 0.889 38 H 0.252 0.748 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.254 -9.011 6.631 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.200 4.200 3 C 0.136 3.864 4 C -0.206 4.206 5 O -0.341 6.341 6 C -0.206 4.206 7 C 0.295 3.705 8 O -0.388 6.388 9 N -0.369 5.369 10 C 0.015 3.985 11 H 0.110 0.890 12 C 0.023 3.977 13 N -0.330 5.330 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.745 3.255 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.015 3.985 23 C -0.132 4.132 24 H 0.090 0.910 25 C -0.194 4.194 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.211 0.789 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.225 0.775 36 H 0.029 0.971 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.917 -8.284 5.191 17.007 hybrid contribution 0.659 -0.413 0.681 1.033 sum -13.258 -8.697 5.872 16.909 Atomic orbital electron populations 1.23838 0.96047 1.02226 1.00244 1.23676 0.96731 0.98999 1.00634 1.19860 0.87909 0.83725 0.94905 1.21958 0.98739 1.05008 0.94859 1.86761 1.50011 1.49006 1.48281 1.22385 1.00389 0.97648 1.00153 1.20257 0.79681 0.88167 0.82372 1.90705 1.64082 1.49642 1.34365 1.45911 1.44656 1.21329 1.24957 1.22658 0.95338 0.84855 0.95639 0.89025 1.22222 0.84358 0.89906 1.01210 1.44397 1.30090 1.41972 1.16512 1.19064 1.01091 1.15050 1.00254 0.90385 1.24810 0.99480 0.98758 0.97476 1.69807 1.40253 1.30618 1.15923 0.86078 0.82299 0.78540 0.78601 1.21676 1.21613 1.20662 1.21333 0.91807 0.95963 0.89403 1.22426 0.96073 0.98795 0.95876 0.90994 1.21728 0.97561 0.99976 1.00104 0.87753 0.88420 0.86708 0.91840 0.92462 0.88166 0.78868 0.89204 0.88202 0.77544 0.97066 0.87120 0.93701 0.95524 0.95980 0.93188 0.92982 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 13.93 29.01 0.40 -1.19 16 2 C -0.18 -1.74 8.77 -36.03 -0.32 -2.06 16 3 C 0.18 2.16 0.94 -91.77 -0.09 2.08 16 4 C -0.15 -2.14 8.50 37.16 0.32 -1.82 16 5 O -0.54 -7.23 10.85 -53.47 -0.58 -7.81 16 6 C -0.17 -1.87 4.93 -27.88 -0.14 -2.00 16 7 C 0.51 8.22 7.39 -10.98 -0.08 8.14 16 8 O -0.51 -10.64 12.60 -12.68 -0.16 -10.80 16 9 N -0.72 -11.18 5.20 -51.73 -0.27 -11.45 16 10 C 0.12 2.34 2.87 -65.79 -0.19 2.15 16 11 H 0.09 2.01 7.45 -51.93 -0.39 1.62 16 12 C 0.15 3.71 5.58 -2.52 -0.01 3.70 16 13 N -0.60 -15.75 3.39 -170.07 -0.58 -16.33 16 14 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -27.56 10.09 55.49 0.56 -27.00 16 18 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.14 2.95 6.84 -3.07 -0.02 2.93 16 23 C -0.11 -1.89 3.19 -88.79 -0.28 -2.18 16 24 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 25 C -0.14 -1.89 9.17 37.16 0.34 -1.55 16 26 H 0.10 0.88 6.41 -52.48 -0.34 0.55 16 27 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.83 5.51 -51.93 -0.29 1.55 16 32 H 0.36 3.49 8.05 45.56 0.37 3.86 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.39 4.80 8.57 -40.82 -0.35 4.45 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 3.25 5.87 -51.93 -0.30 2.94 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.03 0.56 7.78 -51.93 -0.40 0.15 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -34.05 343.97 -7.49 -41.54 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.31 Total: 7.91 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.32 Total: 1.25 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.29 Total: -54.77 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.74 Total: -18.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.05 -7.49 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206914329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.756 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds