Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00124 * 2 1 4 4 C 1.53004 * 109.46825 * 120.00011 * 3 2 1 5 5 O 1.42900 * 109.47169 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46817 * 239.99439 * 3 2 1 7 7 C 1.50705 * 109.46849 * 60.05749 * 6 3 2 8 8 O 1.21273 * 120.00187 * 354.52757 * 7 6 3 9 9 N 1.34779 * 119.99645 * 174.52837 * 7 6 3 10 10 C 1.46498 * 119.99834 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.63873 * 31.86180 * 10 9 7 12 12 C 1.54330 * 111.00489 * 268.78240 * 10 9 7 13 13 N 1.47015 * 107.26802 * 219.60291 * 12 10 9 14 14 C 1.36939 * 125.64899 * 178.84693 * 13 12 10 15 15 H 1.07999 * 119.99632 * 184.96722 * 14 13 12 16 16 C 1.38801 * 120.00006 * 4.70025 * 14 13 12 17 17 N 1.31622 * 119.99982 * 354.77871 * 16 14 13 18 18 Si 1.86803 * 120.00328 * 174.78445 * 16 14 13 19 19 H 1.48498 * 109.47314 * 94.99073 * 18 16 14 20 20 H 1.48498 * 109.47334 * 214.99320 * 18 16 14 21 21 H 1.48503 * 109.46821 * 334.99198 * 18 16 14 22 22 C 1.47428 * 108.70082 * 358.58142 * 13 12 10 23 23 C 1.54909 * 104.83084 * 24.36037 * 22 13 12 24 24 H 1.09001 * 111.00486 * 81.06444 * 23 22 13 25 25 C 1.53003 * 110.99801 * 204.87728 * 23 22 13 26 26 H 1.07997 * 119.99744 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00350 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99443 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46551 * 184.91311 * 4 3 2 30 30 H 1.08999 * 109.47003 * 304.90908 * 4 3 2 31 31 H 1.08997 * 109.47531 * 64.91210 * 4 3 2 32 32 H 0.96702 * 113.99516 * 299.99993 * 5 3 2 33 33 H 1.08996 * 109.47516 * 300.05693 * 6 3 2 34 34 H 1.09006 * 109.46822 * 180.02562 * 6 3 2 35 35 H 0.96999 * 120.00266 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.99075 * 100.12234 * 12 10 9 37 37 H 1.09007 * 109.77771 * 338.95754 * 12 10 9 38 38 H 0.97006 * 120.00137 * 180.02562 * 17 16 14 39 39 H 1.09007 * 110.36292 * 143.19803 * 22 13 12 40 40 H 1.08997 * 110.36788 * 265.51657 * 22 13 12 41 41 H 1.08997 * 109.47202 * 58.54751 * 25 23 22 42 42 H 1.09010 * 109.46704 * 178.54691 * 25 23 22 43 43 H 1.08998 * 109.47462 * 298.53919 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3860 1.2493 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2492 7 6 2.0767 1.3075 -2.4797 8 8 0.8871 1.0983 -2.3713 9 7 2.6239 1.4698 -3.7007 10 6 1.7817 1.3929 -4.8969 11 1 0.7764 1.7560 -4.6830 12 6 1.7307 -0.0485 -5.4459 13 7 1.7771 0.0412 -6.9126 14 6 1.7753 -1.0204 -7.7776 15 1 1.8926 -0.8529 -8.8381 16 6 1.6283 -2.3119 -7.2909 17 7 1.5939 -2.5260 -5.9927 18 14 1.4794 -3.7463 -8.4783 19 1 2.8169 -4.3567 -8.6874 20 1 0.5545 -4.7619 -7.9143 21 1 0.9485 -3.2604 -9.7773 22 6 1.8195 1.4636 -7.2980 23 6 2.4159 2.1904 -6.0669 24 1 3.5027 2.1072 -6.0527 25 6 1.9805 3.6568 -6.0318 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 3.4209 2.3647 1.2944 30 1 2.3276 1.2410 2.1371 31 1 3.7075 0.6102 1.2064 32 1 0.5440 2.4029 -0.7659 33 1 3.6508 0.5569 -1.2497 34 1 3.4886 2.3298 -1.2490 35 1 3.5755 1.6367 -3.7874 36 1 0.8062 -0.5339 -5.1332 37 1 2.5895 -0.6125 -5.0817 38 1 1.4915 -3.4287 -5.6525 39 1 2.4615 1.6019 -8.1681 40 1 0.8143 1.8306 -7.5051 41 1 0.8924 3.7121 -6.0033 42 1 2.3922 4.1368 -5.1439 43 1 2.3471 4.1661 -6.9230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206914330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -45.673600 kcal Electronic energy + Delta-G solvation = -23297.621792 eV Core-core repulsion = 19957.974027 eV Total energy + Delta-G solvation = -3339.647766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08598 -38.28675 -36.93865 -33.89642 -32.88739 -32.62467 -31.10127 -30.38814 -28.76326 -27.11188 -25.61858 -23.66870 -22.36818 -20.75472 -20.02186 -19.67070 -19.35255 -16.99961 -16.93558 -16.56215 -16.00096 -15.40900 -14.93319 -14.81162 -14.03984 -13.78717 -13.64007 -13.15335 -12.81046 -12.78544 -12.58524 -12.49719 -12.26438 -12.02264 -11.77784 -11.72500 -11.58599 -11.35925 -11.04743 -10.89230 -10.78557 -10.62881 -10.40371 -10.00947 -9.99021 -9.95779 -9.76166 -9.64443 -8.85515 -8.60825 -8.46688 -6.84247 -5.71433 -3.05858 2.59749 2.94611 3.39213 3.44850 3.47328 3.50495 4.30623 4.49374 4.77519 4.80455 4.90759 5.08221 5.30706 5.40136 5.42438 5.44584 5.49277 5.52834 5.54441 5.74991 5.77676 5.80199 5.98256 5.99023 6.05761 6.14355 6.19059 6.21925 6.33403 6.48120 6.61555 6.76815 6.85238 6.92578 7.04280 7.54352 7.58022 7.77835 7.83228 7.90605 8.24527 8.57100 9.20456 9.81367 10.46540 11.39526 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.004838 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.274514 B = 5785.771023 C = 6873.750088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.190 4.190 3 C 0.179 3.821 4 C -0.133 4.133 5 O -0.564 6.564 6 C -0.168 4.168 7 C 0.513 3.487 8 O -0.537 6.537 9 N -0.711 5.711 10 C 0.120 3.880 11 H 0.088 0.912 12 C 0.174 3.826 13 N -0.606 5.606 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.141 3.859 23 C -0.114 4.114 24 H 0.076 0.924 25 C -0.136 4.136 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.386 0.614 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.395 0.605 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.041 0.959 40 H 0.022 0.978 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 10.471 10.471 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.208 4.208 3 C 0.138 3.862 4 C -0.190 4.190 5 O -0.375 6.375 6 C -0.208 4.208 7 C 0.299 3.701 8 O -0.415 6.415 9 N -0.361 5.361 10 C 0.015 3.985 11 H 0.106 0.894 12 C 0.048 3.952 13 N -0.333 5.333 14 C -0.360 4.360 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.014 3.986 23 C -0.134 4.134 24 H 0.094 0.906 25 C -0.194 4.194 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.870 10.219 11.092 15.570 hybrid contribution 0.223 -1.103 -1.331 1.743 sum 4.094 9.116 9.760 13.969 Atomic orbital electron populations 1.23583 0.95982 1.01543 0.97356 1.23190 0.96845 0.97668 1.03117 1.19768 0.88064 0.85350 0.93040 1.21700 0.98730 1.02374 0.96244 1.86388 1.51068 1.48863 1.51159 1.22441 0.99848 1.04858 0.93682 1.20481 0.88856 0.76140 0.84593 1.90659 1.15937 1.48462 1.86455 1.45961 1.11809 1.72364 1.05919 1.22487 0.93976 0.99277 0.82752 0.89371 1.21459 1.01545 0.89015 0.83135 1.44412 1.87319 0.99647 1.01927 1.19056 1.43299 0.84535 0.89093 0.90331 1.24829 1.01992 0.97401 0.96068 1.69985 1.56141 1.19931 1.10457 0.86130 0.77472 0.82423 0.79925 1.21702 1.21629 1.20579 1.21581 0.97086 0.85696 0.94228 1.22616 1.00048 0.94130 0.96634 0.90583 1.21688 1.01345 0.95435 1.00938 0.88272 0.88929 0.87391 0.91800 0.91658 0.91075 0.76131 0.87965 0.88521 0.77126 0.93254 0.93622 0.93764 0.94053 0.96033 0.92643 0.93177 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 12.60 29.01 0.37 -1.77 16 2 C -0.19 -2.63 7.47 -36.03 -0.27 -2.90 16 3 C 0.18 2.22 1.08 -91.77 -0.10 2.12 16 4 C -0.13 -1.30 8.83 37.16 0.33 -0.97 16 5 O -0.56 -7.88 11.92 -51.80 -0.62 -8.49 16 6 C -0.17 -1.94 4.97 -27.88 -0.14 -2.08 16 7 C 0.51 7.91 7.31 -10.98 -0.08 7.83 16 8 O -0.54 -9.95 11.60 -11.00 -0.13 -10.08 16 9 N -0.71 -10.84 5.12 -52.03 -0.27 -11.11 16 10 C 0.12 2.23 2.77 -66.10 -0.18 2.05 16 11 H 0.09 1.76 7.42 -51.93 -0.39 1.37 16 12 C 0.17 4.28 5.14 -3.06 -0.02 4.26 16 13 N -0.61 -15.50 3.39 -170.07 -0.58 -16.08 16 14 C -0.23 -6.49 10.27 -15.06 -0.15 -6.65 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -27.44 10.34 55.49 0.57 -26.87 16 18 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.14 2.85 6.70 -2.53 -0.02 2.83 16 23 C -0.11 -1.88 3.27 -88.47 -0.29 -2.16 16 24 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 25 C -0.14 -1.79 9.30 37.16 0.35 -1.45 16 26 H 0.10 1.43 6.41 -52.49 -0.34 1.10 16 27 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 5.59 5.78 45.56 0.26 5.86 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.94 8.56 -40.82 -0.35 4.59 16 36 H 0.05 1.42 7.39 -51.93 -0.38 1.04 16 37 H 0.05 1.23 7.40 -51.93 -0.38 0.85 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 41 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 42 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -32.38 342.97 -7.78 -40.16 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.60 Total: 9.22 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.30 Total: 0.84 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.27 Total: -54.05 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.74 Total: -18.57 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.38 -7.78 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206914330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.515 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds