Wall clock time and date at job start Tue Mar 31 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99862 * 2 1 4 4 H 1.08997 * 109.47492 * 29.99805 * 3 2 1 5 5 C 1.50701 * 109.46814 * 269.99939 * 3 2 1 6 6 O 1.21277 * 119.99941 * 354.99691 * 5 3 2 7 7 N 1.34775 * 119.99910 * 175.00491 * 5 3 2 8 8 C 1.46504 * 119.99904 * 179.97438 * 7 5 3 9 9 H 1.09002 * 110.88589 * 34.29587 * 8 7 5 10 10 C 1.54909 * 111.00462 * 270.41314 * 8 7 5 11 11 N 1.47523 * 104.78433 * 204.90016 * 10 8 7 12 12 C 1.36938 * 125.63741 * 204.08423 * 11 10 8 13 13 H 1.07996 * 120.00050 * 180.02562 * 12 11 10 14 14 C 1.38808 * 119.99825 * 0.04359 * 12 11 10 15 15 N 1.31618 * 120.00529 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47171 * 90.00213 * 16 14 12 18 18 H 1.48497 * 109.47218 * 210.00014 * 16 14 12 19 19 H 1.48498 * 109.47281 * 330.00246 * 16 14 12 20 20 C 1.47022 * 108.71559 * 24.12363 * 11 10 8 21 21 C 1.54330 * 107.27093 * 358.93837 * 20 11 10 22 22 H 1.09005 * 110.71759 * 96.17175 * 21 20 11 23 23 C 1.52991 * 110.72118 * 219.44265 * 21 20 11 24 24 C 1.52999 * 109.47204 * 150.00328 * 3 2 1 25 25 C 1.53006 * 117.49993 * 8.73987 * 24 3 2 26 26 C 1.53005 * 117.49462 * 300.08103 * 24 3 2 27 27 H 1.09003 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47018 * 300.00095 * 1 2 3 29 29 H 1.09001 * 109.47018 * 60.00383 * 1 2 3 30 30 H 0.96994 * 120.00442 * 359.97438 * 7 5 3 31 31 H 1.09001 * 110.36668 * 323.71805 * 10 8 7 32 32 H 1.09004 * 110.36307 * 86.03933 * 10 8 7 33 33 H 0.96998 * 120.00412 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.88478 * 239.52488 * 20 11 10 35 35 H 1.08997 * 110.01216 * 118.42984 * 20 11 10 36 36 H 1.09002 * 109.47201 * 173.52256 * 23 21 20 37 37 H 1.08999 * 109.47805 * 293.52322 * 23 21 20 38 38 H 1.09001 * 109.47241 * 53.52619 * 23 21 20 39 39 H 1.08997 * 115.55497 * 154.41591 * 24 3 2 40 40 H 1.09004 * 117.49376 * 0.02562 * 25 24 3 41 41 H 1.08993 * 117.50181 * 145.02236 * 25 24 3 42 42 H 1.08997 * 117.49830 * 214.97757 * 26 24 3 43 43 H 1.09002 * 117.50107 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7643 -1.4209 6 8 1.9792 1.0104 -2.3413 7 7 2.6589 3.0123 -1.6687 8 6 2.8580 3.4582 -3.0499 9 1 2.1151 3.0141 -3.7125 10 6 4.2947 3.1405 -3.5343 11 7 4.5571 4.1221 -4.6038 12 6 5.4584 3.9694 -5.6234 13 1 5.5775 4.7499 -6.3603 14 6 6.2186 2.8113 -5.7100 15 7 6.0737 1.8601 -4.8119 16 14 7.4476 2.6026 -7.1013 17 1 8.7667 3.1404 -6.6815 18 1 7.5828 1.1609 -7.4302 19 1 6.9703 3.3407 -8.2982 20 6 3.6916 5.2918 -4.3933 21 6 2.8320 5.0067 -3.1437 22 1 3.2804 5.4544 -2.2567 23 6 1.4021 5.5130 -3.3433 24 6 3.3589 1.2633 0.7212 25 6 3.9153 -0.1110 1.0991 26 6 3.3637 0.8168 2.1846 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.8469 3.6153 -0.9326 31 1 5.0069 3.2682 -2.7190 32 1 4.3463 2.1256 -3.9287 33 1 6.6047 1.0506 -4.8727 34 1 3.0479 5.4375 -5.2606 35 1 4.2999 6.1813 -4.2297 36 1 0.7852 5.2009 -2.5006 37 1 1.4073 6.6012 -3.4064 38 1 0.9949 5.0976 -4.2651 39 1 4.0735 2.0320 0.4272 40 1 3.3206 -0.9851 0.8336 41 1 4.9959 -0.2463 1.0541 42 1 4.0818 1.2915 2.8532 43 1 2.4061 0.5536 2.6337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206925669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:51 Heat of formation + Delta-G solvation = -27.676319 kcal Electronic energy + Delta-G solvation = -23277.993269 eV Core-core repulsion = 19939.125924 eV Total energy + Delta-G solvation = -3338.867345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00233 -38.29274 -37.03145 -36.08556 -33.84257 -32.61978 -30.34256 -29.28972 -27.42155 -26.07239 -25.53885 -23.52781 -22.34283 -21.44949 -20.44097 -20.01871 -19.41661 -17.35827 -16.93709 -16.62393 -16.08151 -15.50046 -14.89344 -14.80482 -14.50776 -13.94513 -13.74017 -13.47032 -13.17998 -12.90528 -12.79427 -12.44939 -12.26987 -11.69885 -11.62054 -11.49457 -11.35261 -11.20942 -11.05967 -10.76585 -10.68986 -10.50152 -10.39617 -10.33511 -10.15255 -9.95536 -9.74664 -9.70547 -8.94883 -8.61727 -8.40577 -6.80449 -5.59197 -3.03352 2.90549 3.32935 3.43557 3.48009 3.51080 3.78199 3.87705 4.52494 4.62762 4.83580 4.85166 5.09541 5.14144 5.18777 5.26167 5.31724 5.38532 5.44890 5.48987 5.56802 5.62487 5.64837 5.77002 5.92299 5.96850 6.05069 6.09708 6.16059 6.25622 6.29637 6.38164 6.50790 6.67858 6.83382 6.94439 7.01544 7.50274 7.65489 7.88423 7.98397 8.41902 8.65175 9.25148 9.86558 10.49784 11.43417 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.005005 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.023050 B = 5593.425871 C = 6490.577832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.107 3.893 4 H 0.085 0.915 5 C 0.492 3.508 6 O -0.518 6.518 7 N -0.713 5.713 8 C 0.120 3.880 9 H 0.089 0.911 10 C 0.150 3.850 11 N -0.603 5.603 12 C -0.228 4.228 13 H 0.078 0.922 14 C -0.009 4.009 15 N -0.916 5.916 16 Si 0.914 3.086 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.142 3.858 21 C -0.112 4.112 22 H 0.073 0.927 23 C -0.137 4.137 24 C -0.160 4.160 25 C -0.156 4.156 26 C -0.172 4.172 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.393 0.607 31 H 0.013 0.987 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 2.121 14.522 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.045 3.955 4 H 0.102 0.898 5 C 0.276 3.724 6 O -0.393 6.393 7 N -0.365 5.365 8 C 0.015 3.985 9 H 0.107 0.893 10 C 0.024 3.976 11 N -0.330 5.330 12 C -0.356 4.356 13 H 0.096 0.904 14 C -0.205 4.205 15 N -0.564 5.564 16 Si 0.745 3.255 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.207 1.207 20 C 0.015 3.985 21 C -0.131 4.131 22 H 0.092 0.908 23 C -0.194 4.194 24 C -0.178 4.178 25 C -0.193 4.193 26 C -0.209 4.209 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.226 0.774 31 H 0.031 0.969 32 H 0.129 0.871 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.293 1.215 13.744 17.214 hybrid contribution 0.635 0.550 -0.349 0.910 sum -9.658 1.765 13.395 16.608 Atomic orbital electron populations 1.22836 0.80938 1.03047 0.99847 1.87982 1.19697 1.25080 1.94408 1.21416 0.95071 0.86454 0.92579 0.89779 1.21048 0.77762 0.82078 0.91535 1.90736 1.49678 1.53071 1.45784 1.45906 1.67464 1.14093 1.09041 1.22682 1.01665 0.92782 0.81387 0.89257 1.22236 0.87660 0.97916 0.89806 1.44418 1.44313 1.14961 1.29276 1.19054 1.12501 1.01675 1.02392 0.90374 1.24823 1.00118 0.96706 0.98860 1.69807 1.42975 1.08111 1.35538 0.86084 0.81014 0.77059 0.81386 1.21654 1.21618 1.20666 1.21329 0.91990 0.91454 0.93710 1.22428 0.95831 0.95386 0.99465 0.90838 1.21736 0.95751 1.00446 1.01499 1.22274 0.96670 1.01496 0.97383 1.22876 1.00939 0.94072 1.01363 1.22961 1.02989 1.04322 0.90646 0.89374 0.94260 0.93592 0.77384 0.96949 0.87062 0.93643 0.95555 0.95940 0.93197 0.92877 0.92492 0.86073 0.87449 0.88697 0.88656 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.81 101.05 1.09 1.42 16 2 O -0.35 -5.08 8.24 -55.09 -0.45 -5.54 16 3 C 0.11 1.41 2.87 -27.88 -0.08 1.33 16 4 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 5 C 0.49 8.57 7.12 -10.99 -0.08 8.49 16 6 O -0.52 -11.68 16.20 -14.30 -0.23 -11.91 16 7 N -0.71 -11.43 5.10 -51.73 -0.26 -11.69 16 8 C 0.12 2.36 2.81 -65.78 -0.19 2.17 16 9 H 0.09 1.97 7.54 -51.93 -0.39 1.57 16 10 C 0.15 3.78 5.59 -2.47 -0.01 3.76 16 11 N -0.60 -15.81 3.40 -169.99 -0.58 -16.39 16 12 C -0.23 -6.51 10.27 -15.06 -0.15 -6.66 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -27.86 10.09 55.49 0.56 -27.30 16 16 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.14 2.95 6.84 -3.06 -0.02 2.93 16 21 C -0.11 -1.87 3.18 -88.79 -0.28 -2.16 16 22 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 23 C -0.14 -1.86 9.16 37.15 0.34 -1.52 16 24 C -0.16 -1.96 5.67 -90.61 -0.51 -2.48 16 25 C -0.16 -1.93 9.88 -26.69 -0.26 -2.19 16 26 C -0.17 -1.70 10.19 -26.69 -0.27 -1.97 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.39 4.91 8.54 -40.82 -0.35 4.56 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 3.33 5.88 -51.93 -0.31 3.03 16 33 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.03 0.55 7.76 -51.93 -0.40 0.14 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.82 8.06 -51.93 -0.42 0.41 16 39 H 0.12 1.49 8.03 -51.93 -0.42 1.07 16 40 H 0.11 1.44 7.06 -51.93 -0.37 1.08 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.39 349.96 -8.49 -42.88 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.24 Total: 4.29 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.53 Total: 2.76 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.28 Total: -55.39 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.69 Total: -17.45 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.39 -8.49 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206925669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.203 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds