Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99738 * 2 1 4 4 H 1.08996 * 109.47540 * 23.35498 * 3 2 1 5 5 C 1.50702 * 109.46995 * 143.35519 * 3 2 1 6 6 O 1.21287 * 119.99836 * 4.99896 * 5 3 2 7 7 N 1.34773 * 120.00191 * 185.00033 * 5 3 2 8 8 C 1.46504 * 120.00095 * 180.02562 * 7 5 3 9 9 H 1.09005 * 110.88413 * 34.29568 * 8 7 5 10 10 C 1.54906 * 110.99980 * 270.41901 * 8 7 5 11 11 N 1.47471 * 104.80746 * 204.94717 * 10 8 7 12 12 C 1.36933 * 125.63097 * 204.04716 * 11 10 8 13 13 H 1.08001 * 120.00368 * 180.02562 * 12 11 10 14 14 C 1.38817 * 119.99847 * 0.02686 * 12 11 10 15 15 N 1.31614 * 119.99713 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47075 * 90.00039 * 16 14 12 18 18 H 1.48495 * 109.46921 * 210.00006 * 16 14 12 19 19 H 1.48501 * 109.46833 * 329.99910 * 16 14 12 20 20 C 1.47028 * 108.72374 * 24.07021 * 11 10 8 21 21 C 1.54327 * 107.26922 * 358.97397 * 20 11 10 22 22 H 1.09005 * 110.71837 * 96.17077 * 21 20 11 23 23 C 1.52994 * 110.71997 * 219.44652 * 21 20 11 24 24 C 1.53006 * 109.47029 * 263.35072 * 3 2 1 25 25 C 1.52996 * 117.50079 * 302.95931 * 24 3 2 26 26 C 1.52991 * 60.03328 * 107.49820 * 25 24 3 27 27 H 1.08998 * 109.46628 * 294.69379 * 1 2 3 28 28 H 1.09003 * 109.47191 * 54.68973 * 1 2 3 29 29 H 1.08998 * 109.47192 * 174.69263 * 1 2 3 30 30 H 0.97000 * 119.99916 * 359.97438 * 7 5 3 31 31 H 1.09000 * 110.36975 * 323.74652 * 10 8 7 32 32 H 1.08997 * 110.37145 * 86.08076 * 10 8 7 33 33 H 0.97003 * 119.99538 * 179.97438 * 15 14 12 34 34 H 1.08990 * 109.88222 * 239.55857 * 20 11 10 35 35 H 1.09005 * 110.01115 * 118.46288 * 20 11 10 36 36 H 1.08998 * 109.47046 * 173.52684 * 23 21 20 37 37 H 1.09005 * 109.46974 * 293.51806 * 23 21 20 38 38 H 1.08998 * 109.47419 * 53.51711 * 23 21 20 39 39 H 1.08998 * 115.55859 * 157.26697 * 24 3 2 40 40 H 1.09007 * 117.50056 * 359.97438 * 25 24 3 41 41 H 1.09003 * 117.49808 * 215.00783 * 25 24 3 42 42 H 1.09007 * 117.49572 * 107.47881 * 26 25 24 43 43 H 1.09000 * 117.50281 * 252.47087 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2962 2.0212 0.4074 5 6 3.2560 1.3008 0.8480 6 8 3.6616 0.2615 1.3240 7 7 3.9194 2.4513 1.0776 8 6 5.1307 2.4465 1.9015 9 1 5.6940 1.5242 1.7590 10 6 4.7862 2.6614 3.3964 11 7 6.0099 3.2349 3.9866 12 6 6.3650 3.1691 5.3074 13 1 7.2859 3.6233 5.6423 14 6 5.5415 2.5186 6.2160 15 7 4.4190 1.9655 5.8079 16 14 6.0256 2.4294 8.0180 17 1 5.4736 3.6052 8.7377 18 1 5.4820 1.1833 8.6155 19 1 7.5062 2.4286 8.1333 20 6 6.7851 3.8895 2.9225 21 6 6.0117 3.6881 1.6022 22 1 5.3915 4.5571 1.3822 23 6 6.9753 3.4028 0.4486 24 6 2.3702 1.7035 -1.4329 25 6 3.3127 0.7798 -2.2070 26 6 1.8265 0.8309 -2.5669 27 1 -0.3632 0.4293 0.9337 28 1 -0.3634 0.5940 -0.8386 29 1 -0.3633 -1.0232 -0.0951 30 1 3.5952 3.2823 0.6966 31 1 3.9541 3.3582 3.4976 32 1 4.5454 1.7101 3.8708 33 1 3.8437 1.5106 6.4428 34 1 7.7716 3.4322 2.8477 35 1 6.8852 4.9540 3.1348 36 1 6.4062 3.1510 -0.4463 37 1 7.5832 4.2868 0.2558 38 1 7.6230 2.5674 0.7144 39 1 2.4518 2.7747 -1.6170 40 1 3.6766 -0.1114 -1.6955 41 1 4.0147 1.2433 -2.9002 42 1 1.5507 1.3284 -3.4967 43 1 1.2124 -0.0269 -2.2926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206925670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = -26.068036 kcal Electronic energy + Delta-G solvation = -23272.332769 eV Core-core repulsion = 19933.535165 eV Total energy + Delta-G solvation = -3338.797605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03328 -38.39469 -37.06782 -35.93220 -33.82913 -32.60113 -30.33336 -29.37466 -27.42187 -26.04588 -25.53719 -23.56918 -22.47487 -21.61080 -20.30530 -20.01130 -19.35545 -17.12940 -16.94228 -16.83293 -16.33102 -15.50140 -14.87567 -14.72862 -14.51227 -14.05038 -13.70551 -13.53509 -13.03009 -12.90845 -12.71378 -12.48265 -12.24032 -11.89582 -11.66797 -11.51552 -11.41063 -11.19574 -11.05771 -10.76134 -10.69245 -10.55940 -10.50343 -10.33130 -9.94637 -9.87841 -9.74282 -9.70028 -9.08196 -8.61629 -8.38207 -6.80273 -5.59503 -3.03319 3.00498 3.13629 3.43566 3.48080 3.51074 3.60598 4.12129 4.51240 4.53451 4.77114 4.79692 5.08751 5.11451 5.15736 5.25158 5.31935 5.34354 5.39382 5.47356 5.54876 5.57121 5.60618 5.75619 5.78818 5.98964 5.99548 6.06944 6.13543 6.18856 6.28338 6.40851 6.52302 6.69046 6.85174 6.94718 7.03959 7.51079 7.65680 7.89382 7.99889 8.41970 8.68902 9.25246 9.86661 10.49961 11.43292 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.004715 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.214978 B = 5937.112269 C = 7038.581656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.102 3.898 4 H 0.089 0.911 5 C 0.515 3.485 6 O -0.514 6.514 7 N -0.710 5.710 8 C 0.122 3.878 9 H 0.090 0.910 10 C 0.149 3.851 11 N -0.603 5.603 12 C -0.227 4.227 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.918 5.918 16 Si 0.914 3.086 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.141 3.859 21 C -0.111 4.111 22 H 0.073 0.927 23 C -0.137 4.137 24 C -0.181 4.181 25 C -0.164 4.164 26 C -0.167 4.167 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.392 0.608 31 H 0.012 0.988 32 H 0.112 0.888 33 H 0.252 0.748 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 2.119 -17.539 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.040 3.960 4 H 0.107 0.893 5 C 0.299 3.701 6 O -0.388 6.388 7 N -0.362 5.362 8 C 0.017 3.983 9 H 0.108 0.892 10 C 0.022 3.978 11 N -0.330 5.330 12 C -0.355 4.355 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.566 5.566 16 Si 0.745 3.255 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.015 3.985 21 C -0.130 4.130 22 H 0.091 0.909 23 C -0.194 4.194 24 C -0.200 4.200 25 C -0.201 4.201 26 C -0.204 4.204 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.030 0.970 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.896 1.068 -16.968 17.995 hybrid contribution -0.245 0.821 0.761 1.145 sum -6.141 1.888 -16.207 17.434 Atomic orbital electron populations 1.22918 0.80934 1.02960 1.00217 1.88031 1.19435 1.25098 1.94555 1.21420 0.94600 0.86764 0.93254 0.89319 1.20141 0.84812 0.84285 0.80836 1.90747 1.66823 1.31459 1.49807 1.45753 1.28376 1.09216 1.52852 1.22674 0.84060 0.98054 0.93484 0.89151 1.22240 0.87786 1.01230 0.86494 1.44404 1.21487 1.63429 1.03638 1.19066 1.04430 1.30101 0.81948 0.90349 1.24821 0.96849 1.00504 0.98352 1.69811 1.12929 1.41128 1.32696 0.86076 0.77698 0.77110 0.84623 1.21670 1.21621 1.20645 1.21336 0.94363 0.95902 0.86895 1.22420 0.97158 0.97605 0.95851 0.90873 1.21735 0.98932 1.01328 0.97436 1.22715 1.07609 0.97876 0.91809 1.22902 0.92722 1.01912 1.02577 1.22943 0.97582 1.02245 0.97625 0.93695 0.93765 0.89349 0.77446 0.96981 0.87069 0.93673 0.95516 0.95942 0.93057 0.92949 0.92483 0.86653 0.88104 0.88850 0.88973 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.98 101.05 1.01 1.28 16 2 O -0.35 -5.14 8.59 -55.09 -0.47 -5.61 16 3 C 0.10 1.34 2.97 -27.88 -0.08 1.26 16 4 H 0.09 0.99 7.74 -51.93 -0.40 0.59 16 5 C 0.52 9.08 6.90 -10.99 -0.08 9.01 16 6 O -0.51 -11.79 16.20 -14.31 -0.23 -12.03 16 7 N -0.71 -11.45 5.18 -51.73 -0.27 -11.72 16 8 C 0.12 2.41 2.81 -65.78 -0.19 2.23 16 9 H 0.09 2.00 7.54 -51.93 -0.39 1.61 16 10 C 0.15 3.75 5.58 -2.51 -0.01 3.73 16 11 N -0.60 -15.82 3.40 -170.03 -0.58 -16.40 16 12 C -0.23 -6.49 10.27 -15.06 -0.15 -6.64 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 15 N -0.92 -27.88 10.09 55.49 0.56 -27.32 16 16 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.14 2.95 6.84 -3.06 -0.02 2.93 16 21 C -0.11 -1.87 3.18 -88.79 -0.28 -2.15 16 22 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 23 C -0.14 -1.88 9.16 37.15 0.34 -1.54 16 24 C -0.18 -1.88 5.78 -90.58 -0.52 -2.41 16 25 C -0.16 -1.82 9.85 -26.74 -0.26 -2.08 16 26 C -0.17 -1.57 9.53 -26.70 -0.25 -1.82 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.35 7.59 -51.93 -0.39 -0.04 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.39 4.92 8.54 -40.82 -0.35 4.57 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 3.32 5.88 -51.93 -0.31 3.02 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.03 0.56 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.10 1.02 6.26 -51.93 -0.33 0.69 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -34.61 347.60 -8.56 -43.17 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.18 Total: 3.65 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.60 Total: 3.42 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.29 Total: -55.44 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.71 Total: -17.64 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.61 -8.56 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206925670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.104 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds