Wall clock time and date at job start Tue Mar 31 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64305 * 2 1 4 4 C 1.54332 * 111.00461 * 236.91550 * 2 1 3 5 5 N 1.47011 * 107.26886 * 219.60607 * 4 2 1 6 6 C 1.36939 * 125.64945 * 178.85007 * 5 4 2 7 7 H 1.07998 * 119.99883 * 343.73909 * 6 5 4 8 8 C 1.38814 * 120.00076 * 163.73180 * 6 5 4 9 9 N 1.31623 * 120.00157 * 156.77136 * 8 6 5 10 10 Si 1.86802 * 120.00090 * 336.78094 * 8 6 5 11 11 H 1.48501 * 109.47354 * 89.99602 * 10 8 6 12 12 H 1.48497 * 109.47152 * 329.99417 * 10 8 6 13 13 H 1.48504 * 109.46706 * 209.99371 * 10 8 6 14 14 C 1.47432 * 108.70381 * 358.58232 * 5 4 2 15 15 C 1.54903 * 104.82907 * 24.35951 * 14 5 4 16 16 H 1.09004 * 111.00679 * 81.06577 * 15 14 5 17 17 N 1.46501 * 111.00651 * 204.87745 * 15 14 5 18 18 C 1.34775 * 119.99916 * 273.54607 * 17 15 14 19 19 O 1.21286 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00146 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.47412 * 180.02562 * 20 18 17 22 22 O 1.42894 * 112.84992 * 53.80277 * 21 20 18 23 23 C 1.53785 * 113.61175 * 282.49977 * 21 20 18 24 24 C 1.53774 * 87.08010 * 220.01658 * 23 21 20 25 25 C 1.53780 * 113.61456 * 185.00541 * 21 20 18 26 26 H 1.09001 * 109.46870 * 296.86772 * 1 2 3 27 27 H 1.09005 * 109.47025 * 56.86044 * 1 2 3 28 28 H 1.09000 * 109.47089 * 176.86461 * 1 2 3 29 29 H 1.09000 * 109.98690 * 100.12522 * 4 2 1 30 30 H 1.09008 * 109.77543 * 338.96566 * 4 2 1 31 31 H 0.97001 * 119.99179 * 4.52999 * 9 8 6 32 32 H 1.09003 * 110.36400 * 143.19472 * 14 5 4 33 33 H 1.08999 * 110.36857 * 265.51778 * 14 5 4 34 34 H 0.97000 * 120.00113 * 93.53880 * 17 15 14 35 35 H 1.09002 * 109.47139 * 300.00720 * 20 18 17 36 36 H 1.08999 * 109.46652 * 60.00010 * 20 18 17 37 37 H 0.96701 * 114.00592 * 309.66840 * 22 21 20 38 38 H 1.09004 * 113.61351 * 334.56759 * 23 21 20 39 39 H 1.09002 * 113.61425 * 105.46941 * 23 21 20 40 40 H 1.08995 * 113.62145 * 270.88575 * 24 23 21 41 41 H 1.08998 * 113.61389 * 139.98001 * 24 23 21 42 42 H 1.09000 * 113.61134 * 254.52695 * 25 21 20 43 43 H 1.08997 * 113.61793 * 25.34205 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0832 -0.7865 -1.2072 5 7 3.2494 -1.5471 -0.7352 6 6 4.0124 -2.3920 -1.4961 7 1 3.6392 -2.7506 -2.4440 8 6 5.2657 -2.7875 -1.0493 9 7 5.8026 -3.9026 -1.4975 10 14 6.1903 -1.7374 0.1884 11 1 5.8376 -2.1685 1.5650 12 1 5.8168 -0.3119 0.0051 13 1 7.6519 -1.8970 -0.0210 14 6 3.4652 -1.2446 0.6916 15 6 2.0790 -0.7933 1.2152 16 1 1.4468 -1.6528 1.4386 17 7 2.2174 0.0722 2.3891 18 6 2.3108 -0.4706 3.6192 19 8 2.2807 -1.6755 3.7543 20 6 2.4537 0.4197 4.8268 21 6 2.5392 -0.4418 6.0883 22 8 3.5647 -1.4340 6.0143 23 6 1.1798 -0.9916 6.5520 24 6 1.6405 -0.6989 7.9896 25 6 2.5647 0.3747 7.3912 26 1 -0.3633 0.4644 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 2.3849 -0.0962 -1.9950 30 1 1.3216 -1.4703 -1.5822 31 1 5.3528 -4.4139 -2.1882 32 1 3.7992 -2.1364 1.2220 33 1 4.1930 -0.4409 0.8031 34 1 2.2419 1.0358 2.2811 35 1 3.3609 1.0166 4.7327 36 1 1.5895 1.0803 4.8953 37 1 3.5395 -1.9665 5.2074 38 1 0.3319 -0.3853 6.2332 39 1 1.0444 -2.0530 6.3445 40 1 2.1763 -1.5269 8.4537 41 1 0.8542 -0.2927 8.6259 42 1 3.5473 0.4162 7.8612 43 1 2.0968 1.3550 7.3015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206945121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:17 Heat of formation + Delta-G solvation = -45.772924 kcal Electronic energy + Delta-G solvation = -23309.023187 eV Core-core repulsion = 19969.371115 eV Total energy + Delta-G solvation = -3339.652073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52461 -39.07019 -37.66880 -34.55234 -34.08032 -32.84184 -31.01824 -30.60319 -27.77663 -26.04880 -25.86644 -23.98713 -22.80309 -20.96591 -20.55900 -19.71115 -19.65242 -17.44930 -17.04549 -16.74550 -16.14288 -15.51784 -15.24668 -15.10476 -14.64635 -14.26106 -13.90375 -13.64527 -13.31191 -13.04002 -12.94708 -12.74284 -12.51422 -12.37379 -11.97247 -11.81188 -11.64987 -11.31347 -11.14564 -11.09712 -10.98005 -10.74634 -10.54754 -10.49891 -10.14284 -9.70544 -9.67146 -9.65277 -9.23175 -8.87605 -8.48179 -7.07534 -6.31174 -3.23170 2.61081 3.15879 3.46309 3.51328 3.67189 4.03555 4.39697 4.46121 4.54154 4.60807 4.69712 4.78323 4.96249 5.07607 5.12146 5.14480 5.22651 5.31521 5.46201 5.51613 5.53202 5.59497 5.66903 5.71630 5.76161 5.83268 5.93419 5.98062 6.08486 6.12471 6.20302 6.22829 6.38282 6.50759 6.59428 6.73481 6.76057 7.52663 7.72777 7.81078 8.27975 8.35267 9.03362 9.58408 10.24878 11.16152 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.005184 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.982352 B = 5399.522884 C = 6428.976892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.606 5.606 6 C -0.330 4.330 7 H 0.076 0.924 8 C -0.016 4.016 9 N -0.919 5.919 10 Si 1.063 2.937 11 H -0.292 1.292 12 H -0.289 1.289 13 H -0.298 1.298 14 C 0.101 3.899 15 C 0.134 3.866 16 H 0.099 0.901 17 N -0.715 5.715 18 C 0.514 3.486 19 O -0.538 6.538 20 C -0.164 4.164 21 C 0.129 3.871 22 O -0.549 6.549 23 C -0.162 4.162 24 C -0.135 4.135 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.399 0.601 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.393 0.607 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 13.697 14.298 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.457 4.457 7 H 0.093 0.907 8 C -0.217 4.217 9 N -0.559 5.559 10 Si 0.895 3.105 11 H -0.219 1.219 12 H -0.216 1.216 13 H -0.226 1.226 14 C -0.025 4.025 15 C 0.028 3.972 16 H 0.117 0.883 17 N -0.366 5.366 18 C 0.301 3.699 19 O -0.417 6.417 20 C -0.205 4.205 21 C 0.087 3.913 22 O -0.362 6.362 23 C -0.199 4.199 24 C -0.172 4.172 25 C -0.166 4.166 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.233 0.767 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.906 13.052 15.753 22.730 hybrid contribution -1.502 0.313 -1.723 2.307 sum -11.408 13.366 14.030 22.486 Atomic orbital electron populations 1.21734 0.94431 1.02152 1.01174 1.22447 0.95710 0.99281 0.95590 0.90442 1.21400 0.90447 0.93120 0.93659 1.44663 1.32704 1.51453 1.04495 1.20020 0.98116 1.22589 1.05009 0.90672 1.25906 0.94325 0.98253 1.03175 1.70907 1.44702 1.11354 1.28987 0.83850 0.75701 0.75429 0.75555 1.21930 1.21583 1.22558 1.22307 0.94226 0.99271 0.86714 1.22344 0.98599 0.93141 0.83084 0.88324 1.45995 1.74086 1.10267 1.06211 1.20649 0.75642 0.89191 0.84415 1.90585 1.50066 1.15225 1.85782 1.22374 1.05021 0.99571 0.93508 1.21759 0.88815 0.88974 0.91784 1.86317 1.51615 1.49860 1.48430 1.23574 0.97247 1.02694 0.96435 1.22735 0.99008 0.99085 0.96381 1.23055 1.01041 0.97599 0.94884 0.92959 0.92498 0.92310 0.95182 0.94927 0.92641 0.91782 0.95140 0.76730 0.88027 0.87899 0.75094 0.89977 0.90504 0.89818 0.91552 0.90513 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.17 37.16 0.34 -1.30 16 2 C -0.11 -1.65 3.15 -88.78 -0.28 -1.93 16 3 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 4 C 0.14 2.75 6.85 -3.07 -0.02 2.73 16 5 N -0.61 -15.01 3.23 -170.07 -0.55 -15.56 16 6 C -0.33 -9.62 10.44 -15.06 -0.16 -9.78 16 7 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 8 C -0.02 -0.47 5.43 -17.43 -0.09 -0.56 16 9 N -0.92 -29.35 13.70 55.49 0.76 -28.59 16 10 Si 1.06 27.62 24.70 -169.99 -4.20 23.42 16 11 H -0.29 -7.41 6.70 56.52 0.38 -7.04 16 12 H -0.29 -7.04 6.25 56.52 0.35 -6.69 16 13 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 14 C 0.10 2.26 4.40 -2.53 -0.01 2.25 16 15 C 0.13 2.27 2.76 -65.78 -0.18 2.09 16 16 H 0.10 1.84 7.64 -51.93 -0.40 1.44 16 17 N -0.72 -9.43 5.23 -51.73 -0.27 -9.70 16 18 C 0.51 7.13 7.59 -10.99 -0.08 7.05 16 19 O -0.54 -9.51 13.34 -14.27 -0.19 -9.71 16 20 C -0.16 -1.65 5.34 -27.88 -0.15 -1.79 16 21 C 0.13 1.50 1.10 -89.81 -0.10 1.40 16 22 O -0.55 -8.33 13.39 -55.05 -0.74 -9.06 16 23 C -0.16 -1.75 7.17 -25.92 -0.19 -1.94 16 24 C -0.13 -1.27 8.02 -25.92 -0.21 -1.48 16 25 C -0.13 -1.18 7.47 -25.92 -0.19 -1.37 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.64 7.78 -51.92 -0.40 0.24 16 31 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 32 H 0.06 1.62 6.52 -51.93 -0.34 1.28 16 33 H 0.03 0.69 5.45 -51.93 -0.28 0.41 16 34 H 0.40 3.88 8.52 -40.82 -0.35 3.53 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.39 6.40 6.19 45.56 0.28 6.68 16 38 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -34.32 336.83 -8.04 -42.36 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.61 Total: 6.41 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.32 Total: -4.64 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.06 Total: -53.86 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.93 Total: -18.77 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: -4.20 Total: 23.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.32 -8.04 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206945121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.410 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds