Wall clock time and date at job start Tue Mar 31 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20763 * 120.00162 * 2 1 4 4 C 1.50709 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47102 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46654 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46984 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00489 * 179.97438 * 7 6 5 10 10 C 1.46957 * 120.64915 * 359.81927 * 9 7 6 11 11 C 1.53197 * 108.89063 * 233.53185 * 10 9 7 12 12 C 1.53040 * 109.31110 * 305.44560 * 11 10 9 13 13 C 1.53044 * 109.53662 * 61.36306 * 12 11 10 14 14 H 1.09001 * 109.52587 * 58.60428 * 13 12 11 15 15 N 1.46499 * 109.49460 * 178.68139 * 13 12 11 16 16 C 1.36941 * 120.00314 * 274.83576 * 15 13 12 17 17 H 1.07999 * 119.99835 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00047 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00379 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47018 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47271 * 119.99943 * 20 18 16 23 23 H 1.48506 * 109.47401 * 240.00231 * 20 18 16 24 24 C 1.46926 * 120.63278 * 180.02562 * 9 7 6 25 25 H 1.09005 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47022 * 299.99644 * 1 2 3 27 27 H 1.08995 * 109.47085 * 59.99694 * 1 2 3 28 28 H 1.09004 * 109.47220 * 59.99771 * 4 2 1 29 29 H 1.08994 * 109.46819 * 299.99974 * 4 2 1 30 30 H 1.08992 * 109.47586 * 59.99997 * 5 4 2 31 31 H 1.09006 * 109.46853 * 299.99464 * 5 4 2 32 32 H 1.09004 * 109.47475 * 59.99878 * 6 5 4 33 33 H 1.08997 * 109.47297 * 299.99363 * 6 5 4 34 34 H 1.09001 * 109.46843 * 113.75181 * 10 9 7 35 35 H 1.08997 * 109.71602 * 353.46674 * 10 9 7 36 36 H 1.08995 * 109.50005 * 185.49506 * 11 10 9 37 37 H 1.08996 * 109.49270 * 65.39471 * 11 10 9 38 38 H 1.08994 * 109.45892 * 301.34445 * 12 11 10 39 39 H 1.09000 * 109.46209 * 181.38193 * 12 11 10 40 40 H 0.97011 * 119.99958 * 94.84340 * 15 13 12 41 41 H 0.97004 * 120.00578 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58861 * 6.60537 * 24 9 7 43 43 H 1.08996 * 109.58519 * 246.32428 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0752 -0.0009 8 8 6.4156 -0.9317 -0.0004 9 7 6.8872 -3.0996 -0.0014 10 6 6.4132 -4.4906 0.0020 11 6 7.0714 -5.2362 1.1672 12 6 8.5916 -5.0903 1.0672 13 6 8.9713 -3.6109 1.1640 14 1 8.6092 -3.2029 2.1077 15 7 10.4285 -3.4750 1.0998 16 6 11.1791 -3.6032 2.2379 17 1 10.6968 -3.8050 3.1829 18 6 12.5598 -3.4739 2.1771 19 7 13.1476 -3.2274 1.0255 20 14 13.5837 -3.6495 3.7295 21 1 12.6901 -3.9234 4.8835 22 1 14.5402 -4.7738 3.5671 23 1 14.3349 -2.3916 3.9721 24 6 8.3346 -2.8470 -0.0007 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.9972 -1.8764 -0.8908 29 1 1.9972 -1.8771 0.8891 30 1 4.0278 -0.4546 0.8906 31 1 4.0284 -0.4534 -0.8894 32 1 4.2666 -2.9212 -0.8917 33 1 4.2662 -2.9231 0.8882 34 1 6.6855 -4.9695 -0.9386 35 1 5.3299 -4.5097 0.1214 36 1 6.8035 -6.2917 1.1216 37 1 6.7267 -4.8132 2.1108 38 1 8.9327 -5.4910 0.1127 39 1 9.0636 -5.6404 1.8813 40 1 10.8618 -3.2939 0.2509 41 1 14.1125 -3.1367 0.9830 42 1 8.5192 -1.7794 0.1183 43 1 8.7657 -3.1897 -0.9413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207308017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:37 Heat of formation + Delta-G solvation = -78.918879 kcal Electronic energy + Delta-G solvation = -22068.196142 eV Core-core repulsion = 18727.106753 eV Total energy + Delta-G solvation = -3341.089389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12486 -39.60217 -37.37836 -34.56828 -34.36638 -32.19241 -31.32635 -30.98393 -28.91716 -27.67990 -25.09466 -23.89672 -22.34432 -22.04170 -19.99950 -19.85738 -18.70384 -17.18381 -17.02862 -16.34972 -16.13183 -15.42176 -15.29028 -15.04278 -14.74649 -14.16288 -14.03767 -13.79337 -13.48998 -13.16953 -12.92161 -12.88836 -12.81068 -12.42851 -12.34561 -12.01921 -11.98411 -11.62974 -11.06435 -10.97718 -10.92096 -10.90975 -10.64959 -10.40715 -10.33931 -10.04844 -9.94742 -9.73085 -9.50533 -8.91497 -8.37150 -6.98448 -5.77500 -3.07119 1.69298 2.79707 3.12554 3.43404 3.49070 3.51237 3.74867 4.42885 4.58673 4.64985 4.71648 4.82770 4.88036 4.97427 4.99426 5.13248 5.20333 5.23894 5.29830 5.34292 5.37816 5.52814 5.57798 5.63069 5.74373 5.76530 5.82863 5.93662 6.04186 6.17331 6.19556 6.26078 6.39327 6.55485 6.72423 6.88863 7.04980 7.24883 7.61971 7.69897 8.36431 8.41018 9.51654 10.07151 10.42150 11.45072 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.002938 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.677101 B = 9529.342699 C = 9949.566790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.540 6.540 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.105 3.895 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.092 0.908 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.261 -3.387 -3.820 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.417 6.417 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.017 4.017 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.627 -2.216 -3.647 25.980 hybrid contribution 0.751 -0.428 0.553 1.026 sum -24.876 -2.645 -3.094 25.207 Atomic orbital electron populations 1.22278 0.94682 1.04501 1.04720 1.24664 0.91839 0.90498 0.70504 1.90465 1.71862 1.35233 1.35101 1.22207 0.96714 0.97506 1.04597 1.21174 0.91439 0.96108 1.04944 1.21692 0.92270 0.99787 1.04040 1.20623 0.88529 0.84879 0.76300 1.90726 1.80107 1.21128 1.49710 1.48158 1.07083 1.05978 1.72910 1.21757 0.98686 0.81664 0.99391 1.21936 0.97758 0.99558 0.98004 1.22281 0.92729 1.00608 1.02182 1.20463 0.85921 0.92124 0.95733 0.93276 1.42327 0.99236 1.85679 1.09009 1.19246 0.88745 1.40954 0.87933 0.91122 1.24754 0.96633 1.02625 0.96907 1.69671 1.09212 1.55736 1.23356 0.86114 0.80353 0.77253 0.82440 1.20563 1.21872 1.21809 1.21969 0.77835 1.02572 0.99366 0.90056 0.89148 0.89173 0.88316 0.88281 0.90539 0.90613 0.89049 0.88928 0.91477 0.90269 0.91361 0.91884 0.92486 0.91591 0.78197 0.93506 0.88984 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.93 10.33 36.00 0.37 -0.56 16 2 C 0.35 2.86 7.27 -29.03 -0.21 2.65 16 3 O -0.45 -5.98 16.72 6.00 0.10 -5.88 16 4 C -0.17 -1.09 5.55 -27.88 -0.15 -1.24 16 5 C -0.10 -1.03 3.79 -26.73 -0.10 -1.13 16 6 C -0.14 -1.31 4.05 -27.89 -0.11 -1.42 16 7 C 0.51 7.62 7.70 -10.99 -0.08 7.54 16 8 O -0.54 -10.62 15.40 5.55 0.09 -10.53 16 9 N -0.61 -8.89 2.98 -172.77 -0.51 -9.40 16 10 C 0.11 1.17 6.33 -3.69 -0.02 1.14 16 11 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 12 C -0.14 -2.32 5.47 -26.69 -0.15 -2.47 16 13 C 0.17 3.39 2.92 -67.83 -0.20 3.19 16 14 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.72 -18.20 5.12 -53.33 -0.27 -18.48 16 16 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.11 1.91 5.90 -3.73 -0.02 1.89 16 25 H 0.08 0.18 8.00 -51.93 -0.42 -0.24 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 31 H 0.08 0.95 8.06 -51.93 -0.42 0.54 16 32 H 0.09 0.64 7.95 -51.93 -0.41 0.22 16 33 H 0.09 0.68 7.69 -51.93 -0.40 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.59 5.95 -51.93 -0.31 0.29 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.92 7.01 -51.93 -0.36 1.55 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -35.36 351.12 -7.95 -43.31 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.25 Total: 5.19 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.09 Total: 0.55 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.06 Total: -55.47 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.19 Total: -16.42 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.36 -7.95 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207308017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.613 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds