Wall clock time and date at job start Tue Mar 31 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20766 * 119.99346 * 2 1 4 4 C 1.50688 * 120.00191 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47311 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47318 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.46814 * 179.97438 * 6 5 4 8 8 O 1.21271 * 119.99939 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99400 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63278 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 126.46534 * 10 9 7 12 12 C 1.53044 * 109.31440 * 54.56430 * 11 10 9 13 13 C 1.53040 * 109.53662 * 298.63203 * 12 11 10 14 14 H 1.08996 * 109.49892 * 301.41776 * 13 12 11 15 15 N 1.46492 * 109.49822 * 181.31643 * 13 12 11 16 16 C 1.36936 * 120.00090 * 84.99734 * 15 13 12 17 17 H 1.08002 * 120.00231 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00163 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00151 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47092 * 90.00341 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00051 * 20 18 16 23 23 H 1.48496 * 109.47125 * 330.00245 * 20 18 16 24 24 C 1.46957 * 120.64915 * 179.81885 * 9 7 6 25 25 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47443 * 299.99743 * 1 2 3 27 27 H 1.09003 * 109.47415 * 59.99688 * 1 2 3 28 28 H 1.08998 * 109.47876 * 59.99765 * 4 2 1 29 29 H 1.09004 * 109.47056 * 299.99455 * 4 2 1 30 30 H 1.08998 * 109.46831 * 59.99139 * 5 4 2 31 31 H 1.09004 * 109.46627 * 299.99732 * 5 4 2 32 32 H 1.08994 * 109.47206 * 59.99478 * 6 5 4 33 33 H 1.09004 * 109.47091 * 299.99494 * 6 5 4 34 34 H 1.09002 * 109.58861 * 6.60537 * 10 9 7 35 35 H 1.08996 * 109.58519 * 246.32428 * 10 9 7 36 36 H 1.09003 * 109.49294 * 174.51508 * 11 10 9 37 37 H 1.08997 * 109.50161 * 294.61021 * 11 10 9 38 38 H 1.08994 * 109.45986 * 58.65006 * 12 11 10 39 39 H 1.09001 * 109.45959 * 178.62334 * 12 11 10 40 40 H 0.97003 * 120.00393 * 264.99866 * 15 13 12 41 41 H 0.96993 * 120.00461 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46843 * 113.75181 * 24 9 7 43 43 H 1.08997 * 109.71602 * 353.46674 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 6 4.5298 -2.3504 -0.0011 7 6 6.0115 -2.0749 -0.0022 8 8 6.4156 -0.9315 -0.0035 9 7 6.8873 -3.0993 -0.0018 10 6 6.4128 -4.4899 -0.0009 11 6 7.0677 -5.2381 -1.1663 12 6 8.5882 -5.0929 -1.0706 13 6 8.9684 -3.6139 -1.1717 14 1 8.6034 -3.2082 -2.1152 15 7 10.4258 -3.4785 -1.1116 16 6 11.1735 -3.6131 -2.2508 17 1 10.6888 -3.8186 -3.1938 18 6 12.5545 -3.4842 -2.1940 19 7 13.1453 -3.2333 -1.0449 20 14 13.5744 -3.6670 -3.7482 21 1 13.7264 -2.3411 -4.3994 22 1 14.9145 -4.2042 -3.4006 23 1 12.8932 -4.6010 -4.6803 24 6 8.3351 -2.8472 -0.0069 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.9972 -1.8763 -0.8907 29 1 1.9972 -1.8769 0.8892 30 1 4.0284 -0.4539 0.8888 31 1 4.0277 -0.4536 -0.8911 32 1 4.2662 -2.9222 -0.8907 33 1 4.2668 -2.9217 0.8892 34 1 5.3293 -4.5064 -0.1187 35 1 6.6854 -4.9683 0.9398 36 1 6.7992 -6.2935 -1.1176 37 1 6.7207 -4.8171 -2.1099 38 1 8.9317 -5.4917 -0.1161 39 1 9.0576 -5.6449 -1.8848 40 1 10.8612 -3.2936 -0.2647 41 1 14.1102 -3.1429 -1.0052 42 1 8.7668 -3.1899 0.9334 43 1 8.5221 -1.7802 -0.1274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207308018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:39 Heat of formation + Delta-G solvation = -78.811526 kcal Electronic energy + Delta-G solvation = -22068.203050 eV Core-core repulsion = 18727.118316 eV Total energy + Delta-G solvation = -3341.084734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12566 -39.60199 -37.37960 -34.56952 -34.36562 -32.19106 -31.32471 -30.98323 -28.91698 -27.67918 -25.09409 -23.89441 -22.34422 -22.04020 -19.99786 -19.85684 -18.70330 -17.18250 -17.02843 -16.34934 -16.13189 -15.42121 -15.28987 -15.04247 -14.74613 -14.16064 -14.03831 -13.79287 -13.49420 -13.16909 -12.91753 -12.88619 -12.81025 -12.42820 -12.34458 -12.01907 -11.98334 -11.62957 -11.05972 -10.97705 -10.91888 -10.90386 -10.64095 -10.40473 -10.34818 -10.07550 -9.94822 -9.72476 -9.50449 -8.90846 -8.37084 -6.98392 -5.77236 -3.06886 1.69289 2.79809 3.12606 3.43995 3.49028 3.50415 3.74934 4.42941 4.58822 4.65053 4.71651 4.82749 4.88096 4.97400 4.99457 5.13386 5.20360 5.23936 5.29886 5.34353 5.37858 5.52906 5.57852 5.63123 5.74467 5.76574 5.82916 5.93661 6.04234 6.17378 6.19572 6.26204 6.39440 6.55597 6.72506 6.89003 7.05103 7.24897 7.62058 7.69482 8.36515 8.41286 9.51842 10.07358 10.42372 11.45288 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.002937 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.852444 B = 9531.890280 C = 9949.983518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.540 6.540 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.105 3.895 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.212 -3.380 3.883 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.210 4.210 5 C -0.137 4.137 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.417 6.417 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.017 4.017 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -25.571 -2.217 3.716 25.934 hybrid contribution 0.739 -0.422 -0.567 1.022 sum -24.832 -2.639 3.149 25.170 Atomic orbital electron populations 1.22279 0.94683 1.04500 1.04720 1.24660 0.91840 0.90498 0.70505 1.90465 1.71874 1.35222 1.35102 1.22204 0.96715 0.97506 1.04599 1.21175 0.91439 0.96109 1.04943 1.21694 0.92278 0.99785 1.04041 1.20619 0.88524 0.84877 0.76301 1.90721 1.80109 1.21128 1.49701 1.48159 1.07085 1.05980 1.72914 1.21751 0.98680 0.81672 0.99391 1.21937 0.97774 0.99545 0.98000 1.22282 0.92716 1.00618 1.02186 1.20459 0.85936 0.92118 0.95721 0.93296 1.42312 0.99229 1.85571 1.09121 1.19200 0.88766 1.41023 0.87972 0.91181 1.24755 0.96618 1.02599 0.96914 1.69661 1.09201 1.55610 1.23521 0.86182 0.79795 0.77677 0.82478 1.21663 1.21763 1.20779 1.21973 0.77831 1.02561 0.99363 0.90058 0.89169 0.89152 0.88276 0.88316 0.90616 0.90538 0.88930 0.89047 0.90289 0.91462 0.91365 0.91887 0.92485 0.91589 0.78193 0.93454 0.91843 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.93 10.33 36.01 0.37 -0.56 16 2 C 0.35 2.86 7.27 -29.04 -0.21 2.65 16 3 O -0.45 -5.99 16.72 5.99 0.10 -5.89 16 4 C -0.17 -1.09 5.55 -27.89 -0.15 -1.24 16 5 C -0.10 -1.03 3.79 -26.73 -0.10 -1.13 16 6 C -0.14 -1.31 4.05 -27.88 -0.11 -1.42 16 7 C 0.51 7.63 7.70 -10.98 -0.08 7.54 16 8 O -0.54 -10.62 15.40 5.56 0.09 -10.53 16 9 N -0.61 -8.89 2.98 -172.77 -0.51 -9.41 16 10 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 11 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 12 C -0.14 -2.32 5.47 -26.69 -0.15 -2.47 16 13 C 0.17 3.39 2.92 -67.83 -0.20 3.19 16 14 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.72 -18.21 5.12 -53.33 -0.27 -18.48 16 16 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.11 1.92 5.89 -3.71 -0.02 1.89 16 25 H 0.08 0.18 8.00 -51.93 -0.42 -0.24 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 31 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 33 H 0.09 0.64 7.94 -51.93 -0.41 0.22 16 34 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.92 7.02 -51.93 -0.36 1.55 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -35.33 351.12 -7.95 -43.28 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.25 Total: 5.24 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.09 Total: 0.54 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.06 Total: -55.49 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.19 Total: -16.42 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.33 -7.95 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207308018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.529 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds