Wall clock time and date at job start Tue Mar 31 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00199 * 2 1 4 4 C 1.52992 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.50698 * 115.55591 * 294.87692 * 4 3 2 6 6 O 1.21281 * 120.00341 * 124.22851 * 5 4 3 7 7 N 1.34776 * 119.99625 * 304.23677 * 5 4 3 8 8 C 1.46504 * 119.99612 * 175.02345 * 7 5 4 9 9 H 1.09005 * 110.78158 * 36.78481 * 8 7 5 10 10 C 1.54319 * 110.72170 * 273.53953 * 8 7 5 11 11 N 1.47019 * 107.27753 * 219.44484 * 10 8 7 12 12 C 1.36933 * 125.65494 * 178.90642 * 11 10 8 13 13 H 1.08002 * 119.99536 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00266 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47081 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47155 * 120.00162 * 16 14 12 19 19 H 1.48508 * 109.47189 * 240.00131 * 16 14 12 20 20 C 1.47431 * 108.69784 * 358.94061 * 11 10 8 21 21 C 1.54905 * 104.83418 * 24.12975 * 20 11 10 22 22 H 1.08999 * 111.00613 * 81.09810 * 21 20 11 23 23 C 1.52998 * 111.00741 * 204.91443 * 21 20 11 24 24 C 1.53005 * 117.49701 * 80.55318 * 4 3 2 25 25 C 1.53008 * 117.49779 * 149.20877 * 4 3 2 26 26 H 1.08991 * 109.47355 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46890 * 299.99864 * 1 2 3 28 28 H 1.09005 * 109.46922 * 59.99565 * 1 2 3 29 29 H 1.08997 * 109.46521 * 60.00134 * 3 2 1 30 30 H 1.08996 * 109.47222 * 300.00568 * 3 2 1 31 31 H 0.96999 * 120.00336 * 355.01907 * 7 5 4 32 32 H 1.09006 * 109.88059 * 100.02594 * 10 8 7 33 33 H 1.09002 * 109.88510 * 338.86879 * 10 8 7 34 34 H 0.96996 * 119.99997 * 180.02562 * 15 14 12 35 35 H 1.09000 * 110.36137 * 142.96319 * 20 11 10 36 36 H 1.08995 * 110.36688 * 265.28651 * 20 11 10 37 37 H 1.08997 * 109.47056 * 58.54082 * 23 21 20 38 38 H 1.09001 * 109.47493 * 178.54626 * 23 21 20 39 39 H 1.09005 * 109.46920 * 298.54365 * 23 21 20 40 40 H 1.09007 * 117.49799 * 215.00046 * 24 4 3 41 41 H 1.08998 * 117.49943 * 0.02562 * 24 4 3 42 42 H 1.09002 * 117.49602 * 359.97438 * 25 4 3 43 43 H 1.08998 * 117.50128 * 144.97226 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1378 0.5633 1.2344 6 8 4.8580 -0.4074 1.1347 7 7 3.8760 1.0864 2.4486 8 6 4.3713 0.4198 3.6556 9 1 5.3585 -0.0090 3.4831 10 6 3.3796 -0.6648 4.1263 11 7 3.3346 -0.6077 5.5947 12 6 2.5562 -1.3948 6.4006 13 1 1.9034 -2.1359 5.9636 14 6 2.6062 -1.2402 7.7792 15 7 3.4014 -0.3367 8.3117 16 14 1.5448 -2.3145 8.8786 17 1 0.7456 -3.2438 8.0400 18 1 2.4138 -3.0964 9.7944 19 1 0.6308 -1.4570 9.6752 20 6 4.2659 0.4382 6.0557 21 6 4.4026 1.4054 4.8535 22 1 3.5623 2.0984 4.8120 23 6 5.7314 2.1619 4.9066 24 6 4.2226 0.9065 -1.3378 25 6 4.3321 2.2909 -0.6940 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.3598 1.9042 2.5234 32 1 3.7243 -1.6474 3.8039 33 1 2.3894 -0.4645 3.7170 34 1 3.4366 -0.2289 9.2750 35 1 3.8522 0.9610 6.9180 36 1 5.2335 0.0020 6.3037 37 1 6.5558 1.4489 4.9040 38 1 5.8129 2.8148 4.0375 39 1 5.7722 2.7612 5.8162 40 1 5.1103 0.2740 -1.3260 41 1 3.5881 0.8101 -2.2189 42 1 3.7695 3.1046 -1.1518 43 1 5.2916 2.5696 -0.2584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207984749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:15 Heat of formation + Delta-G solvation = -30.020658 kcal Electronic energy + Delta-G solvation = -23149.132532 eV Core-core repulsion = 19810.163529 eV Total energy + Delta-G solvation = -3338.969003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15969 -38.26147 -37.40293 -36.08318 -33.96547 -32.30251 -30.74290 -28.56387 -27.45431 -25.86595 -25.63592 -24.11509 -22.75219 -22.52464 -20.25736 -19.90074 -18.95793 -17.32053 -16.82572 -16.37113 -16.09388 -15.81362 -15.36467 -14.77515 -14.39648 -14.30308 -13.75788 -13.60228 -13.20517 -12.87967 -12.65187 -12.64250 -12.25593 -11.86935 -11.76718 -11.59029 -11.50697 -11.31249 -10.96121 -10.83138 -10.78531 -10.61462 -10.43484 -10.20271 -10.02735 -9.83563 -9.76980 -9.57195 -9.36019 -8.64718 -8.62220 -6.80767 -5.63668 -3.04836 2.72955 3.23753 3.38699 3.41703 3.47341 3.49902 3.90464 4.47006 4.51171 4.66467 4.73117 4.87056 5.07202 5.20642 5.20930 5.28150 5.37089 5.38583 5.41777 5.51074 5.59081 5.61193 5.66121 5.72835 5.81467 5.96653 6.00441 6.14652 6.19784 6.44471 6.50521 6.61184 6.66816 6.81875 7.00203 7.10597 7.51879 7.65272 7.78551 7.88055 8.36108 8.51247 9.24239 9.84642 10.49254 11.40493 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019525 B = 0.004642 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.678553 B = 6030.067970 C = 7001.274563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.105 3.895 4 C -0.163 4.163 5 C 0.556 3.444 6 O -0.536 6.536 7 N -0.711 5.711 8 C 0.137 3.863 9 H 0.091 0.909 10 C 0.129 3.871 11 N -0.604 5.604 12 C -0.218 4.218 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.924 5.924 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.160 3.840 21 C -0.125 4.125 22 H 0.072 0.928 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.150 4.150 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.396 0.604 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.251 0.749 35 H 0.110 0.890 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 9.532 -17.199 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.028 3.972 4 C -0.166 4.166 5 C 0.341 3.659 6 O -0.412 6.412 7 N -0.360 5.360 8 C 0.032 3.968 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.330 5.330 12 C -0.346 4.346 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.573 5.573 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.035 3.965 21 C -0.145 4.145 22 H 0.090 0.910 23 C -0.191 4.191 24 C -0.173 4.173 25 C -0.187 4.187 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.888 8.584 -17.031 19.092 hybrid contribution -1.106 -0.010 0.646 1.281 sum -1.994 8.573 -16.384 18.599 Atomic orbital electron populations 1.22761 0.80794 1.03108 0.99821 1.87999 1.19678 1.26916 1.95313 1.21864 0.89267 0.85461 1.00637 1.21401 0.93874 1.06752 0.94612 1.19214 0.80078 0.83254 0.83395 1.90686 1.37517 1.26561 1.86423 1.45931 1.56181 1.28377 1.05547 1.22156 0.98046 0.93959 0.82603 0.89139 1.21605 0.95968 0.95863 0.86358 1.44447 1.48094 1.41303 0.99150 1.19144 1.15862 1.11988 0.87628 0.90451 1.24767 0.99938 0.99575 0.96446 1.69778 1.41170 1.36184 1.10155 0.85995 0.79478 0.79465 0.80569 1.20542 1.21734 1.21789 1.21989 0.92816 0.87809 0.93881 1.22916 0.97314 0.97285 0.96978 0.90962 1.21634 0.96960 0.99722 1.00769 1.22960 1.02724 0.97911 0.93675 1.23084 1.01121 0.92324 1.02165 0.89415 0.93777 0.94274 0.92471 0.92480 0.77011 0.95600 0.95620 0.93805 0.87261 0.96609 0.92830 0.93752 0.92420 0.87408 0.87928 0.87767 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.21 10.63 -35.23 -0.37 -5.58 16 3 C 0.10 1.14 5.74 37.15 0.21 1.35 16 4 C -0.16 -1.97 2.18 -155.66 -0.34 -2.31 16 5 C 0.56 9.06 7.08 -10.99 -0.08 8.99 16 6 O -0.54 -10.98 16.18 5.56 0.09 -10.89 16 7 N -0.71 -11.07 5.10 -52.03 -0.27 -11.33 16 8 C 0.14 2.60 2.74 -66.09 -0.18 2.42 16 9 H 0.09 1.85 7.51 -51.93 -0.39 1.46 16 10 C 0.13 2.97 6.99 -3.07 -0.02 2.94 16 11 N -0.60 -15.94 3.39 -170.08 -0.58 -16.52 16 12 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 15 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.16 3.89 5.36 -2.53 -0.01 3.87 16 21 C -0.12 -2.31 3.25 -88.47 -0.29 -2.60 16 22 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 23 C -0.13 -2.06 9.29 37.16 0.35 -1.72 16 24 C -0.14 -1.44 9.76 -26.69 -0.26 -1.70 16 25 C -0.15 -1.31 9.93 -26.69 -0.26 -1.57 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.40 5.08 8.29 -40.82 -0.34 4.74 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.59 8.03 -51.93 -0.42 0.18 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 36 H 0.02 0.41 8.04 -51.93 -0.42 0.00 16 37 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.30 7.84 -51.93 -0.41 0.89 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -33.67 352.46 -7.60 -41.27 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.29 Total: 2.53 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.03 Total: 4.28 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.28 Total: -54.24 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.28 Total: -16.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.67 -7.60 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207984749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.248 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds