Wall clock time and date at job start Tue Mar 31 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00047 * 2 1 4 4 N 1.46497 * 109.46772 * 125.00365 * 3 2 1 5 5 C 1.46503 * 120.00126 * 90.00118 * 4 3 2 6 6 C 1.53007 * 109.46946 * 89.99407 * 5 4 3 7 7 N 1.46904 * 109.46668 * 180.02562 * 6 5 4 8 8 C 1.47959 * 110.99462 * 190.00235 * 7 6 5 9 9 C 1.53940 * 86.17699 * 222.41626 * 8 7 6 10 10 C 1.50706 * 113.72960 * 138.08084 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.62264 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.89962 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.48181 * 111.07114 * 90.56996 * 7 6 5 19 19 C 1.34774 * 119.99994 * 269.99491 * 4 3 2 20 20 O 1.21519 * 120.00069 * 180.02562 * 19 4 3 21 21 O 1.34639 * 120.00015 * 0.02562 * 19 4 3 22 22 C 1.45200 * 116.99971 * 180.02562 * 21 19 4 23 23 C 1.53000 * 109.47084 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00039 * 180.02562 * 1 2 3 25 25 H 1.08008 * 119.99898 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99517 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47387 * 5.00196 * 3 2 1 28 28 H 1.09002 * 109.47061 * 245.00226 * 3 2 1 29 29 H 1.09001 * 109.47079 * 330.00012 * 5 4 3 30 30 H 1.09000 * 109.47120 * 209.99340 * 5 4 3 31 31 H 1.09001 * 109.46737 * 60.00396 * 6 5 4 32 32 H 1.09000 * 109.47157 * 299.99910 * 6 5 4 33 33 H 1.08999 * 113.75755 * 108.10617 * 8 7 6 34 34 H 1.08998 * 113.86166 * 336.74626 * 8 7 6 35 35 H 1.09004 * 113.73426 * 269.25544 * 9 8 7 36 36 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 37 37 H 1.09002 * 113.76007 * 23.23287 * 18 7 6 38 38 H 1.09000 * 113.82508 * 251.80992 * 18 7 6 39 39 H 1.09004 * 109.47028 * 299.99673 * 22 21 19 40 40 H 1.08998 * 109.47778 * 59.99622 * 22 21 19 41 41 H 1.09005 * 109.47228 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47402 * 299.99798 * 23 22 21 43 43 H 1.09001 * 109.46830 * 59.99913 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.3590 0.8255 0.9693 6 6 5.2754 1.9650 0.5190 7 7 6.6442 1.4571 0.3559 8 6 7.6012 2.5675 0.1550 9 6 8.2405 1.6833 -0.9309 10 6 8.6252 2.4371 -2.1779 11 1 8.4678 3.5041 -2.2341 12 6 9.1729 1.7636 -3.2491 13 7 9.3590 0.4634 -3.1829 14 14 9.6504 2.6980 -4.7945 15 1 10.6691 3.7245 -4.4574 16 1 10.2119 1.7515 -5.7916 17 1 8.4494 3.3607 -5.3634 18 6 6.8743 0.9808 -1.0283 19 6 2.5938 1.8221 2.3213 20 8 3.3656 1.8447 3.2597 21 8 1.3390 2.2871 2.4704 22 6 0.9776 2.8009 3.7795 23 6 -0.4750 3.2809 3.7557 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.3666 0.0350 0.2189 30 1 4.7142 0.4276 1.9199 31 1 5.2677 2.7555 1.2694 32 1 4.9202 2.3628 -0.4316 33 1 8.2499 2.7485 1.0120 34 1 7.1448 3.4783 -0.2327 35 1 9.0388 1.0407 -0.5596 36 1 9.7439 -0.0104 -3.9366 37 1 6.2031 1.4255 -1.7631 38 1 6.9433 -0.1035 -1.1150 39 1 1.0875 2.0112 4.5227 40 1 1.6312 3.6346 4.0358 41 1 -0.7465 3.6662 4.7386 42 1 -0.5846 4.0706 3.0125 43 1 -1.1289 2.4473 3.4992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209017496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:52 Heat of formation + Delta-G solvation = -26.018481 kcal Electronic energy + Delta-G solvation = -22333.339166 eV Core-core repulsion = 18994.543711 eV Total energy + Delta-G solvation = -3338.795456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58252 -38.75018 -37.34139 -36.11446 -33.61666 -32.65657 -31.92142 -30.42088 -27.12407 -26.25611 -24.96292 -24.45338 -23.09742 -21.50452 -20.70835 -19.81441 -18.60421 -18.15655 -17.02869 -16.79247 -16.51034 -15.38054 -15.13308 -14.74945 -14.63769 -14.40026 -13.98901 -13.79958 -13.59953 -13.48408 -13.01229 -12.72372 -12.30133 -12.06632 -11.93061 -11.78615 -11.68890 -11.50629 -11.34412 -11.05569 -10.95218 -10.62962 -10.60845 -10.50783 -10.18639 -9.81407 -9.64609 -9.20210 -9.03438 -8.78514 -8.44950 -7.88044 -6.05616 -4.10214 1.85579 2.30181 2.82658 3.29211 3.34479 3.36735 3.82430 4.39673 4.70869 4.72870 4.76174 4.83495 4.96636 5.07272 5.12448 5.22282 5.24674 5.33456 5.50400 5.53013 5.55191 5.68558 5.72015 5.80508 5.90221 6.07968 6.18643 6.32236 6.37315 6.40739 6.46515 6.51082 6.52760 6.66564 6.82863 7.12828 7.21055 7.32993 7.72751 7.90955 8.07617 8.28951 8.36688 8.92090 9.54622 11.03768 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.003328 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.063976 B = 8410.967636 C = 8892.483490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.173 4.173 3 C 0.139 3.861 4 N -0.588 5.588 5 C 0.139 3.861 6 C 0.009 3.991 7 N -0.489 5.489 8 C 0.002 3.998 9 C 0.039 3.961 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.011 3.989 19 C 0.649 3.351 20 O -0.568 6.568 21 O -0.370 6.370 22 C 0.081 3.919 23 C -0.151 4.151 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.262 0.738 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.013 1.718 8.515 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C 0.016 3.984 4 N -0.327 5.327 5 C 0.018 3.982 6 C -0.121 4.121 7 N -0.212 5.212 8 C -0.127 4.127 9 C 0.020 3.980 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.118 4.118 19 C 0.403 3.597 20 O -0.457 6.457 21 O -0.284 6.284 22 C 0.006 3.994 23 C -0.209 4.209 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.675 1.158 9.319 21.801 hybrid contribution -0.036 0.989 -1.525 1.818 sum -19.711 2.147 7.794 21.305 Atomic orbital electron populations 1.23843 0.95732 1.01917 0.99725 1.23329 0.96342 0.99003 1.00525 1.20717 0.92182 0.95935 0.89556 1.46848 1.13631 1.63926 1.08327 1.21449 0.77138 0.96106 1.03476 1.22914 0.92267 0.96933 0.99954 1.68389 1.02232 1.23060 1.27541 1.24042 0.95107 0.93830 0.99726 1.20300 0.92603 0.92754 0.92296 1.21064 1.41724 0.94145 0.98827 0.92559 1.25005 0.95118 0.94854 0.98635 1.69954 1.43879 1.07148 1.31397 0.86688 0.78897 0.79712 0.82870 1.20172 1.21240 1.20296 1.24183 1.00803 1.00304 0.86461 1.18063 0.80685 0.77308 0.83666 1.91012 1.54436 1.60677 1.39536 1.86235 1.30183 1.74842 1.37172 1.22907 0.96550 0.98785 0.81155 1.21812 0.93920 1.02131 1.02995 0.88424 0.88360 0.87039 0.89452 0.88965 0.89788 0.88942 0.91726 0.94257 0.91572 0.92789 0.92265 0.92825 0.92789 0.91314 0.91318 0.91278 0.90146 0.91540 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 14.32 29.01 0.42 -1.08 16 2 C -0.17 -1.73 9.85 -36.03 -0.35 -2.09 16 3 C 0.14 1.52 5.85 -5.20 -0.03 1.49 16 4 N -0.59 -8.12 2.46 -180.86 -0.44 -8.56 16 5 C 0.14 2.14 5.72 -4.04 -0.02 2.12 16 6 C 0.01 0.17 5.12 -3.82 -0.02 0.15 16 7 N -0.49 -10.00 6.16 -238.15 -1.47 -11.47 16 8 C 0.00 0.03 7.50 -2.76 -0.02 0.01 16 9 C 0.04 0.99 3.60 -90.84 -0.33 0.66 16 10 C -0.52 -14.09 8.77 -34.44 -0.30 -14.39 16 11 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 14 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 C 0.01 0.25 7.53 -2.64 -0.02 0.23 16 19 C 0.65 9.86 8.39 54.05 0.45 10.31 16 20 O -0.57 -10.40 15.71 -19.29 -0.30 -10.71 16 21 O -0.37 -4.65 9.05 -40.32 -0.36 -5.01 16 22 C 0.08 0.80 6.19 37.16 0.23 1.03 16 23 C -0.15 -1.00 10.29 37.16 0.38 -0.61 16 24 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 25 H 0.10 0.77 7.84 -52.48 -0.41 0.35 16 26 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.09 0.88 7.03 -51.93 -0.36 0.52 16 28 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 31 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.04 0.68 7.39 -51.93 -0.38 0.30 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 35 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.05 1.22 7.44 -51.93 -0.39 0.83 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -30.55 362.69 -8.48 -39.03 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.37 Total: 0.36 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.29 Total: -0.44 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -1.17 Total: -44.61 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.67 Total: -15.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.55 -8.48 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209017496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds