Wall clock time and date at job start Tue Mar 31 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00078 * 2 1 4 4 O 1.42894 * 109.46949 * 134.99998 * 3 2 1 5 5 C 1.42902 * 114.00247 * 179.97438 * 4 3 2 6 6 H 1.09010 * 109.46650 * 29.99687 * 5 4 3 7 7 C 1.53000 * 109.47626 * 270.00111 * 5 4 3 8 8 C 1.50696 * 109.47559 * 149.99759 * 5 4 3 9 9 O 1.21279 * 119.99728 * 5.00185 * 8 5 4 10 10 N 1.34776 * 120.00464 * 185.00725 * 8 5 4 11 11 C 1.46496 * 120.00444 * 180.02562 * 10 8 5 12 12 H 1.08998 * 110.64408 * 31.85342 * 11 10 8 13 13 C 1.54334 * 111.00209 * 268.77656 * 11 10 8 14 14 N 1.47014 * 107.26782 * 219.60150 * 13 11 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 11 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 11 24 24 C 1.54919 * 104.82744 * 24.35958 * 23 14 13 25 25 H 1.08998 * 111.00388 * 81.10361 * 24 23 14 26 26 C 1.52993 * 110.99944 * 204.91728 * 24 23 14 27 27 H 1.07998 * 119.99497 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00226 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99263 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47226 * 14.99801 * 3 2 1 31 31 H 1.09003 * 109.47160 * 254.99674 * 3 2 1 32 32 H 1.09002 * 109.46477 * 59.99127 * 7 5 4 33 33 H 1.08991 * 109.47633 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46907 * 300.00288 * 7 5 4 35 35 H 0.97009 * 119.99762 * 359.97438 * 10 8 5 36 36 H 1.08998 * 109.99457 * 100.11852 * 13 11 10 37 37 H 1.09007 * 109.77698 * 338.95672 * 13 11 10 38 38 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 40 40 H 1.08999 * 110.36944 * 265.52330 * 23 14 13 41 41 H 1.09002 * 109.47666 * 58.54873 * 26 24 23 42 42 H 1.09008 * 109.47143 * 178.54440 * 26 24 23 43 43 H 1.08999 * 109.47170 * 298.53910 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4347 1.0321 6 1 3.2845 3.2946 0.7880 7 6 5.0707 2.3502 0.0406 8 6 4.4507 2.5881 2.4297 9 8 4.2696 1.7131 3.2498 10 7 5.1369 3.6975 2.7685 11 6 5.6645 3.8463 4.1270 12 1 5.9324 2.8754 4.5437 13 6 4.6481 4.5647 5.0395 14 7 5.4077 5.4818 5.9017 15 6 4.8718 6.3225 6.8406 16 1 5.5181 6.9565 7.4293 17 6 3.4980 6.3596 7.0354 18 7 2.7104 5.5866 6.3182 19 14 2.7671 7.5059 8.3166 20 1 1.2896 7.3574 8.3283 21 1 3.3102 7.1625 9.6553 22 1 3.1204 8.9094 7.9842 23 6 6.8424 5.3419 5.5927 24 6 6.8846 4.8048 4.1402 25 1 6.7549 5.6132 3.4207 26 6 8.1841 4.0420 3.8752 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1160 0.2659 31 1 2.4756 1.4867 -0.9927 32 1 4.6784 2.2393 -0.9703 33 1 5.6667 3.2607 0.1009 34 1 5.6945 1.4903 0.2846 35 1 5.2821 4.3972 2.1124 36 1 4.1162 3.8359 5.6511 37 1 3.9404 5.1283 4.4314 38 1 1.7504 5.6123 6.4547 39 1 7.3397 6.3099 5.6537 40 1 7.3097 4.6307 6.2738 41 1 8.2694 3.2139 4.5789 42 1 8.1763 3.6538 2.8566 43 1 9.0324 4.7148 4.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211424485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:57 Heat of formation + Delta-G solvation = -37.203874 kcal Electronic energy + Delta-G solvation = -22714.220617 eV Core-core repulsion = 19374.940126 eV Total energy + Delta-G solvation = -3339.280491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81541 -38.21603 -37.11682 -34.14698 -33.89115 -32.69466 -31.11931 -30.35502 -27.69654 -26.35852 -25.62848 -24.33647 -23.13872 -20.66371 -20.19703 -19.98495 -19.43583 -17.14179 -17.06057 -16.74257 -15.81311 -15.71901 -15.02744 -14.87860 -14.23988 -14.01922 -13.72896 -13.23489 -13.10348 -12.98149 -12.76272 -12.69858 -12.42431 -12.37873 -11.89846 -11.69126 -11.54266 -11.32649 -11.05797 -10.98992 -10.74771 -10.58335 -10.39895 -10.10620 -9.96774 -9.92940 -9.68117 -9.59695 -9.14233 -8.59927 -8.43279 -6.81561 -5.67053 -3.02529 1.98540 2.98075 3.14039 3.42444 3.46566 3.48374 4.01030 4.52041 4.70539 4.81961 4.89251 4.99698 5.02290 5.12784 5.16372 5.32935 5.36569 5.43016 5.46904 5.55963 5.57476 5.69462 5.77730 5.94221 6.00877 6.01918 6.16967 6.22228 6.36625 6.39772 6.48202 6.50872 6.64073 6.79834 6.93965 7.04956 7.58839 7.61251 7.86494 7.93755 8.27994 8.62951 9.23781 9.84551 10.49544 11.43556 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.004442 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.722417 B = 6302.293058 C = 7805.918048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.070 3.930 6 H 0.086 0.914 7 C -0.168 4.168 8 C 0.513 3.487 9 O -0.518 6.518 10 N -0.710 5.710 11 C 0.121 3.879 12 H 0.088 0.912 13 C 0.173 3.827 14 N -0.606 5.606 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.141 3.859 24 C -0.113 4.113 25 H 0.077 0.923 26 C -0.137 4.137 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.042 0.958 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -5.570 -16.400 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.103 0.897 7 C -0.226 4.226 8 C 0.297 3.703 9 O -0.392 6.392 10 N -0.362 5.362 11 C 0.017 3.983 12 H 0.106 0.894 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.211 1.211 22 H -0.212 1.212 23 C 0.014 3.986 24 C -0.133 4.133 25 H 0.095 0.905 26 C -0.195 4.195 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.361 -6.337 -15.587 17.158 hybrid contribution -0.545 1.179 0.177 1.311 sum 2.817 -5.158 -15.410 16.492 Atomic orbital electron populations 1.23839 0.95562 1.02292 1.00079 1.22700 0.95623 0.98121 1.00184 1.21654 0.88894 0.96249 0.92352 1.88082 1.44035 1.34662 1.60222 1.21918 0.93837 0.89546 0.93836 0.89666 1.22218 0.98062 1.03514 0.98793 1.20186 0.78772 0.82437 0.88897 1.90728 1.56147 1.40927 1.51384 1.45828 1.56323 1.20172 1.13916 1.22495 0.94488 0.99543 0.81808 0.89354 1.21474 0.90764 0.91946 0.91108 1.44404 0.99724 1.46028 1.43110 1.19009 0.90485 1.14854 1.11629 0.90371 1.24824 0.96053 0.99735 0.99744 1.69969 1.03319 1.41176 1.42225 0.86201 0.78116 0.80235 0.81203 1.21621 1.21127 1.21197 1.21587 0.87865 0.97714 0.91435 1.22612 0.93786 0.97494 0.99437 0.90485 1.21693 0.96753 0.99986 1.01020 0.88368 0.87801 0.86540 0.92516 0.92328 0.91523 0.90887 0.91107 0.77169 0.93491 0.93168 0.93675 0.93967 0.96050 0.92620 0.93158 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 14.31 29.01 0.42 -1.27 16 2 C -0.15 -1.59 9.89 -36.03 -0.36 -1.94 16 3 C 0.08 0.95 6.16 36.00 0.22 1.17 16 4 O -0.35 -5.27 9.51 -55.09 -0.52 -5.80 16 5 C 0.07 0.92 3.13 -27.88 -0.09 0.84 16 6 H 0.09 0.95 7.79 -51.92 -0.40 0.54 16 7 C -0.17 -1.61 9.48 37.16 0.35 -1.26 16 8 C 0.51 9.00 7.18 -10.99 -0.08 8.92 16 9 O -0.52 -11.74 16.15 -14.30 -0.23 -11.97 16 10 N -0.71 -11.45 5.08 -52.03 -0.26 -11.71 16 11 C 0.12 2.35 2.77 -66.09 -0.18 2.17 16 12 H 0.09 1.85 7.42 -51.93 -0.39 1.47 16 13 C 0.17 4.35 5.14 -3.06 -0.02 4.33 16 14 N -0.61 -15.67 3.39 -170.06 -0.58 -16.25 16 15 C -0.23 -6.54 10.28 -15.06 -0.15 -6.69 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -27.84 10.31 55.49 0.57 -27.27 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.14 2.87 6.70 -2.52 -0.02 2.85 16 24 C -0.11 -1.88 3.27 -88.47 -0.29 -2.17 16 25 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 26 C -0.14 -1.82 9.29 37.15 0.35 -1.47 16 27 H 0.10 0.85 7.90 -52.49 -0.41 0.43 16 28 H 0.10 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.06 0.61 7.81 -51.93 -0.41 0.20 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.07 0.51 7.87 -51.93 -0.41 0.11 16 33 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 5.01 8.35 -40.82 -0.34 4.67 16 36 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 37 H 0.05 1.38 7.26 -51.93 -0.38 1.00 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 41 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -34.93 355.09 -7.92 -42.85 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.28 Total: 2.21 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 0.06 Total: 5.17 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.27 Total: -55.22 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.75 Total: -17.76 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.93 -7.92 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211424485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.651 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds