Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20759 * 120.00331 * 2 1 4 4 C 1.50698 * 120.00128 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47597 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47457 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47067 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99990 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00100 * 180.02562 * 7 6 5 10 10 C 1.47018 * 125.64981 * 179.97438 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.82520 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 C 1.52995 * 110.72304 * 219.52316 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 110.89538 * 277.26533 * 14 11 10 16 16 N 1.46505 * 111.03913 * 153.47072 * 14 11 10 17 17 C 1.36935 * 120.00217 * 161.23025 * 16 14 11 18 18 H 1.08006 * 119.99642 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00007 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99572 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 120.00139 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47224 * 90.00046 * 21 19 17 23 23 H 1.48503 * 109.47388 * 210.00158 * 21 19 17 24 24 H 1.48501 * 109.47319 * 330.00053 * 21 19 17 25 25 C 1.47426 * 125.64500 * 359.95253 * 9 7 6 26 26 H 1.08998 * 109.47551 * 269.99695 * 1 2 3 27 27 H 1.09001 * 109.46964 * 30.00393 * 1 2 3 28 28 H 1.09001 * 109.47027 * 149.99990 * 1 2 3 29 29 H 1.09005 * 109.47057 * 60.00007 * 4 2 1 30 30 H 1.09003 * 109.47302 * 300.00694 * 4 2 1 31 31 H 1.08996 * 109.46954 * 59.99952 * 5 4 2 32 32 H 1.09002 * 109.46872 * 300.00094 * 5 4 2 33 33 H 1.08996 * 109.47291 * 59.99897 * 6 5 4 34 34 H 1.09002 * 109.46942 * 299.99789 * 6 5 4 35 35 H 1.09002 * 109.88241 * 298.32048 * 10 9 7 36 36 H 1.09000 * 109.88049 * 59.33177 * 10 9 7 37 37 H 1.08999 * 109.47083 * 58.54334 * 13 11 10 38 38 H 1.09002 * 109.47293 * 178.54343 * 13 11 10 39 39 H 1.09000 * 109.47062 * 298.54438 * 13 11 10 40 40 H 0.96998 * 119.99743 * 341.23259 * 16 14 11 41 41 H 0.97003 * 119.99397 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36956 * 323.01018 * 25 9 7 43 43 H 1.09001 * 110.36709 * 85.22211 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5297 -2.3506 0.0011 7 6 6.0113 -2.0752 0.0022 8 8 6.4156 -0.9318 0.0025 9 7 6.8872 -3.0996 0.0018 10 6 8.3520 -2.9745 0.0023 11 6 8.9372 -4.4022 0.0318 12 1 9.1880 -4.7371 -0.9747 13 6 10.1620 -4.4665 0.9464 14 6 7.7671 -5.2427 0.6145 15 1 7.7508 -5.1844 1.7028 16 7 7.8458 -6.6353 0.1665 17 6 7.1669 -7.6122 0.8447 18 1 6.5737 -7.3560 1.7102 19 6 7.2419 -8.9317 0.4205 20 7 6.5897 -9.8707 1.0728 21 14 8.2683 -9.3748 -1.0759 22 1 9.6543 -9.6938 -0.6487 23 1 7.6743 -10.5564 -1.7515 24 1 8.2924 -8.2266 -2.0174 25 6 6.5349 -4.5311 0.0014 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9971 -1.8771 -0.8892 30 1 1.9970 -1.8763 0.8908 31 1 4.0277 -0.4538 0.8910 32 1 4.0284 -0.4542 -0.8889 33 1 4.2666 -2.9220 -0.8891 34 1 4.2661 -2.9223 0.8909 35 1 8.6803 -2.4579 -0.8997 36 1 8.6766 -2.4226 0.8844 37 1 9.8803 -4.1579 1.9531 38 1 10.5428 -5.4875 0.9725 39 1 10.9355 -3.7998 0.5651 40 1 8.3788 -6.8654 -0.6106 41 1 6.6424 -10.7929 0.7765 42 1 5.6517 -4.7047 0.6161 43 1 6.3616 -4.8788 -1.0171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214134203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = -75.188781 kcal Electronic energy + Delta-G solvation = -22072.142333 eV Core-core repulsion = 18731.214693 eV Total energy + Delta-G solvation = -3340.927640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.03708 -39.56107 -37.75005 -34.40312 -34.20843 -32.59150 -31.15466 -30.91915 -28.43139 -27.91636 -26.01395 -23.87960 -22.49050 -21.24688 -20.16604 -19.80720 -18.93077 -17.62547 -16.83710 -16.43872 -16.09611 -15.84457 -15.22013 -15.06902 -14.67734 -14.35285 -13.92070 -13.42048 -13.30877 -13.25667 -12.88157 -12.79002 -12.70208 -12.43187 -12.17770 -12.05152 -11.94149 -11.77935 -11.50936 -11.45146 -11.16334 -10.87611 -10.83594 -10.68643 -10.42026 -10.02031 -9.93557 -9.72024 -9.61172 -9.09724 -8.40889 -7.44706 -5.90127 -3.28233 1.75161 2.80831 3.14355 3.28338 3.31404 3.37753 3.83356 4.46789 4.49138 4.69068 4.80746 4.83214 4.95402 4.97574 5.06032 5.07947 5.08554 5.30843 5.35241 5.40129 5.44669 5.47300 5.54477 5.66382 5.68345 5.73212 5.73717 5.84959 6.00466 6.07257 6.08599 6.23732 6.24771 6.29538 6.41496 6.50053 6.70927 7.30269 7.73707 7.83917 8.28433 8.34456 9.05043 9.77322 9.95554 11.27466 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.003556 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.082354 B = 7872.643051 C = 9080.230626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.352 3.648 3 O -0.456 6.456 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.137 4.137 7 C 0.525 3.475 8 O -0.552 6.552 9 N -0.616 5.616 10 C 0.116 3.884 11 C -0.117 4.117 12 H 0.081 0.919 13 C -0.135 4.135 14 C 0.182 3.818 15 H 0.074 0.926 16 N -0.735 5.735 17 C -0.253 4.253 18 H 0.092 0.908 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.074 3.926 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 14.197 -2.829 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.227 3.773 3 O -0.330 6.330 4 C -0.212 4.212 5 C -0.133 4.133 6 C -0.176 4.176 7 C 0.314 3.686 8 O -0.430 6.430 9 N -0.350 5.350 10 C -0.007 4.007 11 C -0.137 4.137 12 H 0.100 0.900 13 C -0.193 4.193 14 C 0.070 3.930 15 H 0.092 0.908 16 N -0.377 5.377 17 C -0.382 4.382 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.052 4.052 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.164 15.247 -2.657 16.659 hybrid contribution 0.503 -0.789 -1.143 1.477 sum -5.661 14.458 -3.800 15.985 Atomic orbital electron populations 1.22307 0.94627 1.04705 1.04633 1.24662 0.91884 0.90449 0.70294 1.90441 1.71974 1.35245 1.35339 1.22201 0.96611 0.97458 1.04949 1.21143 0.91589 0.96006 1.04596 1.21652 0.91579 0.99703 1.04706 1.20347 0.88306 0.83877 0.76086 1.90686 1.80373 1.21025 1.50967 1.48564 1.06654 1.07291 1.72493 1.21927 0.80034 0.97127 1.01580 1.22557 0.96441 0.94021 1.00647 0.90018 1.21673 0.96337 1.02366 0.98916 1.21392 0.90037 0.84043 0.97497 0.90841 1.42645 1.58805 1.01967 1.34281 1.19046 1.23259 0.86524 1.09397 0.89010 1.24675 0.99667 0.95649 0.98643 1.69699 1.45708 1.00646 1.41488 0.86580 0.80590 0.77841 0.83653 1.20942 1.21644 1.20261 1.23425 1.01660 0.78282 1.01845 0.88713 0.89898 0.89616 0.88178 0.88085 0.90719 0.90800 0.88832 0.88666 0.92055 0.91546 0.92476 0.91576 0.93023 0.80231 0.92875 0.90721 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.15 10.25 36.00 0.37 -0.78 16 2 C 0.35 3.21 7.27 -29.04 -0.21 2.99 16 3 O -0.46 -6.24 16.72 6.00 0.10 -6.14 16 4 C -0.17 -1.37 5.62 -27.88 -0.16 -1.52 16 5 C -0.10 -1.09 3.79 -26.73 -0.10 -1.19 16 6 C -0.14 -1.57 4.71 -27.88 -0.13 -1.70 16 7 C 0.52 8.11 7.85 -10.98 -0.09 8.02 16 8 O -0.55 -10.35 16.31 5.56 0.09 -10.26 16 9 N -0.62 -9.33 3.33 -170.50 -0.57 -9.89 16 10 C 0.12 1.67 6.46 -3.07 -0.02 1.65 16 11 C -0.12 -1.68 3.19 -88.65 -0.28 -1.97 16 12 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 13 C -0.14 -1.76 9.14 37.15 0.34 -1.42 16 14 C 0.18 3.14 3.14 -65.63 -0.21 2.93 16 15 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 16 N -0.74 -15.63 5.08 -51.20 -0.26 -15.89 16 17 C -0.25 -6.53 10.47 -15.06 -0.16 -6.68 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.61 13.97 55.49 0.78 -26.83 16 21 Si 0.88 20.74 27.73 -169.99 -4.71 16.02 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 25 C 0.07 1.15 6.39 -2.51 -0.02 1.13 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 37 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.36 7.67 5.58 -40.82 -0.23 7.44 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -32.97 354.41 -7.33 -40.30 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.34 Total: 5.70 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.76 Total: 1.65 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.05 Total: -52.62 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.19 Total: -16.40 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.97 -7.33 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214134203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.890 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds