Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.88969 * 2 1 4 4 C 1.54912 * 111.00332 * 236.12251 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64645 * 203.86243 * 5 4 2 7 7 O 1.21278 * 120.00386 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99690 * 179.97438 * 6 5 4 9 9 O 1.42893 * 109.46818 * 180.02562 * 8 6 5 10 10 C 1.42905 * 113.99961 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47413 * 180.02562 * 10 9 8 12 12 C 1.53002 * 117.49803 * 243.62256 * 11 10 9 13 13 C 1.52998 * 117.50127 * 174.99913 * 11 10 9 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.08996 * 110.72159 * 96.17410 * 15 14 5 17 17 N 1.46498 * 110.71986 * 219.44234 * 15 14 5 18 18 C 1.36938 * 120.00187 * 268.52532 * 17 15 14 19 19 H 1.07999 * 119.99658 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00241 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99476 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00245 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47058 * 90.00125 * 22 20 18 24 24 H 1.48499 * 109.47299 * 210.00362 * 22 20 18 25 25 H 1.48503 * 109.46844 * 330.00429 * 22 20 18 26 26 H 1.09002 * 109.46921 * 182.42116 * 1 2 3 27 27 H 1.09003 * 109.47131 * 302.42637 * 1 2 3 28 28 H 1.09001 * 109.47089 * 62.42194 * 1 2 3 29 29 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 30 30 H 1.08995 * 110.46379 * 323.80457 * 4 2 1 31 31 H 1.08997 * 109.47117 * 300.00376 * 8 6 5 32 32 H 1.09002 * 109.46743 * 60.00082 * 8 6 5 33 33 H 1.08998 * 109.46840 * 299.99634 * 10 9 8 34 34 H 1.09005 * 109.47031 * 60.00127 * 10 9 8 35 35 H 1.08997 * 115.54820 * 29.32358 * 11 10 9 36 36 H 1.08994 * 117.49940 * 359.97438 * 12 11 10 37 37 H 1.09004 * 117.49649 * 145.02185 * 12 11 10 38 38 H 1.08997 * 117.49911 * 214.97781 * 13 11 10 39 39 H 1.08998 * 117.49459 * 0.02562 * 13 11 10 40 40 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 41 41 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 42 42 H 0.97006 * 120.00026 * 88.51838 * 17 15 14 43 43 H 0.97004 * 119.99221 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4462 -1.5652 -1.5949 7 8 4.2981 -1.5071 -2.7972 8 6 5.7703 -1.9966 -1.0187 9 8 6.6819 -2.2818 -2.0815 10 6 7.9746 -2.7027 -1.6412 11 6 8.8626 -2.9783 -2.8563 12 6 9.3542 -4.4126 -3.0612 13 6 10.3287 -3.3292 -2.5949 14 6 3.4674 -1.2745 0.6954 15 6 2.0861 -0.8085 1.2018 16 1 1.4468 -1.6638 1.4202 17 7 2.2286 0.0485 2.3815 18 6 2.2000 -0.5019 3.6351 19 1 2.0727 -1.5677 3.7541 20 6 2.3355 0.3101 4.7528 21 7 2.4911 1.6090 4.6076 22 14 2.2957 -0.4405 6.4629 23 1 3.6739 -0.8117 6.8727 24 1 1.7423 0.5468 7.4241 25 1 1.4392 -1.6536 6.4511 26 1 -0.3633 -1.0268 0.0434 27 1 -0.3633 0.5511 0.8675 28 1 -0.3633 0.4758 -0.9109 29 1 2.1560 -0.1711 -2.0838 30 1 1.4524 -1.6697 -1.4051 31 1 6.1746 -1.1967 -0.3984 32 1 5.6282 -2.8907 -0.4116 33 1 8.4247 -1.9179 -1.0333 34 1 7.8781 -3.6119 -1.0476 35 1 8.6365 -2.3914 -3.7465 36 1 9.0453 -5.1598 -2.3302 37 1 9.4516 -4.7696 -4.0866 38 1 11.0671 -2.9735 -3.3133 39 1 10.6604 -3.3642 -1.5572 40 1 3.6650 -2.2899 1.0390 41 1 4.2426 -0.6002 1.0596 42 1 2.3434 1.0058 2.2745 43 1 2.5854 2.1763 5.3888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214204699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = -43.678027 kcal Electronic energy + Delta-G solvation = -22056.448523 eV Core-core repulsion = 18716.887292 eV Total energy + Delta-G solvation = -3339.561231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91446 -38.53608 -37.52266 -36.37313 -34.11252 -32.58070 -30.78762 -29.14561 -27.56540 -26.86669 -25.18489 -23.96200 -22.65459 -21.61490 -20.95980 -20.00184 -19.11232 -17.36127 -17.20042 -16.56020 -16.42047 -15.84453 -15.52800 -14.94259 -14.61323 -14.38943 -13.94296 -13.61204 -13.29204 -13.20014 -12.81759 -12.73423 -12.43419 -12.15987 -12.07016 -11.80942 -11.56334 -11.31013 -11.18535 -11.04331 -10.78505 -10.72751 -10.64098 -10.50268 -10.29709 -10.04486 -9.82571 -9.69047 -9.58454 -9.05239 -8.37011 -7.15499 -5.90567 -3.21710 2.76559 2.78576 3.34991 3.40926 3.42566 3.47946 3.83691 4.45732 4.53447 4.62129 4.65280 4.87244 5.01016 5.05957 5.10359 5.10863 5.15226 5.23865 5.28937 5.35124 5.42936 5.52262 5.59378 5.60328 5.72382 5.81093 5.82065 5.87687 5.94302 5.97007 6.16066 6.20634 6.32691 6.44093 6.50490 6.58409 6.81319 6.98723 7.57549 7.74098 8.26475 8.35518 9.38800 9.92289 10.27224 11.31206 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.003591 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.406819 B = 7795.141458 C = 9257.091706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.535 6.535 8 C 0.050 3.950 9 O -0.362 6.362 10 C 0.091 3.909 11 C -0.151 4.151 12 C -0.178 4.178 13 C -0.174 4.174 14 C 0.068 3.932 15 C 0.178 3.822 16 H 0.070 0.930 17 N -0.711 5.711 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -8.229 -11.285 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.316 3.684 7 O -0.411 6.411 8 C -0.030 4.030 9 O -0.280 6.280 10 C 0.014 3.986 11 C -0.170 4.170 12 C -0.215 4.215 13 C -0.211 4.211 14 C -0.058 4.058 15 C 0.065 3.935 16 H 0.088 0.912 17 N -0.350 5.350 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.850 -8.286 -11.976 16.544 hybrid contribution 0.273 -0.095 1.397 1.426 sum 8.122 -8.382 -10.580 15.753 Atomic orbital electron populations 1.21595 0.93793 1.01838 1.01783 1.22664 0.96403 0.99818 0.94604 0.89808 1.22259 0.82391 0.98155 0.97856 1.48453 1.12058 1.66272 1.08065 1.19808 0.84452 0.77831 0.86320 1.90690 1.82816 1.53128 1.14500 1.22155 0.89163 1.01391 0.90278 1.87968 1.21674 1.87778 1.30629 1.22066 0.82991 0.98598 0.94939 1.22110 0.94915 0.99430 1.00495 1.23075 1.03741 0.91922 1.02734 1.22981 0.92038 1.03470 1.02634 1.23419 1.03700 1.01264 0.77416 1.21245 0.91440 0.93881 0.86903 0.91217 1.42369 1.86287 1.06262 1.00120 1.19246 1.43031 0.92592 0.83194 0.90951 1.24773 1.02228 0.95434 0.98008 1.69664 1.55839 1.02865 1.29204 0.86191 0.77649 0.77984 0.84330 1.21620 1.21708 1.20638 0.92789 0.91391 0.93176 0.90915 0.91589 0.90069 0.90313 0.92566 0.92974 0.86665 0.88647 0.88604 0.88391 0.88605 0.92175 0.90787 0.77837 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.30 37.16 0.35 -1.48 16 2 C -0.11 -1.77 3.27 -88.47 -0.29 -2.06 16 3 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 4 C 0.12 1.73 6.37 -2.53 -0.02 1.71 16 5 N -0.61 -9.79 3.33 -170.51 -0.57 -10.36 16 6 C 0.53 8.94 7.93 -10.98 -0.09 8.86 16 7 O -0.53 -10.90 16.76 -14.35 -0.24 -11.14 16 8 C 0.05 0.69 5.61 36.01 0.20 0.89 16 9 O -0.36 -5.34 9.88 -55.14 -0.54 -5.88 16 10 C 0.09 0.99 6.22 37.16 0.23 1.22 16 11 C -0.15 -1.51 6.06 -90.62 -0.55 -2.06 16 12 C -0.18 -1.48 10.18 -26.73 -0.27 -1.76 16 13 C -0.17 -1.34 10.25 -26.73 -0.27 -1.62 16 14 C 0.07 1.11 6.24 -3.06 -0.02 1.09 16 15 C 0.18 3.18 3.08 -66.10 -0.20 2.97 16 16 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 17 N -0.71 -16.12 5.15 -51.65 -0.27 -16.39 16 18 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 22 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 35 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 42 H 0.39 9.49 7.76 -40.82 -0.32 9.17 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -30.71 358.41 -9.11 -39.82 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.42 Total: 7.23 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.18 Total: 0.96 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.11 Total: -52.51 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.79 Total: -17.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.71 -9.11 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214204699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.854 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds