Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 119.99961 * 2 1 4 4 C 1.52998 * 109.47388 * 119.99929 * 3 2 1 5 5 O 1.42900 * 109.47217 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47315 * 239.99959 * 3 2 1 7 7 C 1.50702 * 109.47265 * 60.11204 * 6 3 2 8 8 O 1.21283 * 119.99514 * 354.37466 * 7 6 3 9 9 N 1.34770 * 120.00295 * 174.65781 * 7 6 3 10 10 C 1.47025 * 125.65040 * 179.43850 * 9 7 6 11 11 C 1.54333 * 107.26824 * 178.84702 * 10 9 7 12 12 H 1.09001 * 110.66598 * 96.52294 * 11 10 9 13 13 C 1.52989 * 110.85250 * 219.67474 * 11 10 9 14 14 C 1.55162 * 103.02101 * 338.14224 * 11 10 9 15 15 H 1.09001 * 110.99962 * 277.23564 * 14 11 10 16 16 N 1.46495 * 111.00413 * 153.37819 * 14 11 10 17 17 C 1.36934 * 119.99685 * 161.35262 * 16 14 11 18 18 H 1.08004 * 120.00551 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00009 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00222 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46999 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47155 * 119.99462 * 21 19 17 24 24 H 1.48504 * 109.46783 * 239.99268 * 21 19 17 25 25 C 1.47422 * 125.64803 * 359.74286 * 9 7 6 26 26 H 1.08001 * 119.99922 * 179.97438 * 1 2 3 27 27 H 1.07992 * 120.00258 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00515 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47702 * 184.93388 * 4 3 2 30 30 H 1.09001 * 109.47305 * 304.93402 * 4 3 2 31 31 H 1.08998 * 109.47054 * 64.93454 * 4 3 2 32 32 H 0.96701 * 114.00194 * 299.99953 * 5 3 2 33 33 H 1.08995 * 109.47232 * 300.11035 * 6 3 2 34 34 H 1.09005 * 109.47259 * 180.10931 * 6 3 2 35 35 H 1.08997 * 109.88025 * 298.39425 * 10 9 7 36 36 H 1.09004 * 109.88128 * 59.55550 * 10 9 7 37 37 H 1.08995 * 109.47583 * 173.69523 * 13 11 10 38 38 H 1.09003 * 109.47072 * 293.69042 * 13 11 10 39 39 H 1.09007 * 109.47447 * 53.68910 * 13 11 10 40 40 H 0.96992 * 120.00135 * 341.35099 * 16 14 11 41 41 H 0.97002 * 120.00748 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.36921 * 322.93512 * 25 9 7 43 43 H 1.09005 * 110.36796 * 85.14641 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3862 1.2492 5 8 1.1348 2.3912 -0.0006 6 6 2.9431 1.3862 -1.2492 7 6 2.0765 1.3091 -2.4798 8 8 0.8871 1.0979 -2.3715 9 7 2.6240 1.4692 -3.7008 10 6 1.9006 1.4070 -4.9792 11 6 2.9268 1.6769 -6.0999 12 1 3.2929 0.7401 -6.5200 13 6 2.3197 2.5577 -7.1936 14 6 4.0645 2.4279 -5.3587 15 1 3.8344 3.4890 -5.2630 16 7 5.3501 2.2299 -6.0325 17 6 6.3907 3.0855 -5.7867 18 1 6.2634 3.9065 -5.0966 19 6 7.6088 2.8984 -6.4255 20 7 7.7639 1.8983 -7.2670 21 14 9.0281 4.0659 -6.0908 22 1 8.5994 5.0988 -5.1139 23 1 10.1753 3.3041 -5.5351 24 1 9.4376 4.7231 -7.3580 25 6 4.0488 1.7295 -3.9760 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 3.4205 2.3650 1.2946 30 1 2.3276 1.2408 2.1370 31 1 3.7077 0.6106 1.2061 32 1 0.5438 2.4030 -0.7659 33 1 3.6501 0.5566 -1.2503 34 1 3.4896 2.3293 -1.2483 35 1 1.4596 0.4186 -5.1078 36 1 1.1211 2.1687 -5.0015 37 1 3.0920 2.8263 -7.9143 38 1 1.5242 2.0113 -7.7003 39 1 1.9102 3.4631 -6.7455 40 1 5.4643 1.4929 -6.6525 41 1 8.6152 1.7672 -7.7131 42 1 4.4685 2.3866 -3.2144 43 1 4.6047 0.7927 -4.0160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214521043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = -56.552802 kcal Electronic energy + Delta-G solvation = -22991.878885 eV Core-core repulsion = 19651.759362 eV Total energy + Delta-G solvation = -3340.119523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30877 -38.59341 -36.94754 -34.13280 -33.01483 -32.62186 -31.18538 -30.76152 -28.52533 -27.56057 -25.83249 -24.03359 -22.50424 -21.55796 -20.01258 -19.68887 -19.05229 -17.24897 -17.14673 -16.57176 -16.16663 -15.78369 -15.12521 -14.59847 -14.32466 -13.89701 -13.61611 -13.18140 -13.05947 -13.02810 -12.97048 -12.57447 -12.47145 -12.18358 -12.03397 -11.81254 -11.70633 -11.68617 -11.16685 -11.06937 -11.01177 -10.79907 -10.65947 -10.27811 -10.11132 -9.98006 -9.92408 -9.78777 -9.12433 -9.01306 -8.39771 -7.14927 -5.91004 -3.22102 2.40704 2.74623 3.16172 3.35173 3.41901 3.43523 4.23273 4.43959 4.57326 4.73792 4.75736 4.95018 5.07247 5.16500 5.26581 5.34533 5.41411 5.48489 5.54479 5.59682 5.67552 5.72017 5.75820 5.77311 5.88102 5.96119 6.00889 6.05518 6.16229 6.19434 6.30824 6.40303 6.46923 6.56188 6.65023 6.81172 6.86148 7.58199 7.64405 7.78713 8.25567 8.29580 9.38660 9.91800 10.26777 11.30907 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.004244 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.600813 B = 6595.427456 C = 7622.238461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.186 4.186 3 C 0.178 3.822 4 C -0.134 4.134 5 O -0.562 6.562 6 C -0.163 4.163 7 C 0.527 3.473 8 O -0.553 6.553 9 N -0.611 5.611 10 C 0.117 3.883 11 C -0.114 4.114 12 H 0.084 0.916 13 C -0.134 4.134 14 C 0.178 3.822 15 H 0.065 0.935 16 N -0.711 5.711 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.071 3.929 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.385 0.615 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 -2.595 10.362 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.204 4.204 3 C 0.136 3.864 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.203 4.203 7 C 0.316 3.684 8 O -0.433 6.433 9 N -0.343 5.343 10 C -0.006 4.006 11 C -0.133 4.133 12 H 0.102 0.898 13 C -0.192 4.192 14 C 0.065 3.935 15 H 0.083 0.917 16 N -0.351 5.351 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.055 4.055 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.562 -2.427 11.055 16.180 hybrid contribution 0.822 0.012 -0.712 1.087 sum -10.741 -2.415 10.343 15.105 Atomic orbital electron populations 1.23571 0.95945 1.01480 0.97983 1.23233 0.96810 0.97808 1.02577 1.19814 0.88070 0.85184 0.93292 1.21705 0.98696 1.02782 0.95974 1.86417 1.50996 1.48880 1.50926 1.22411 0.99624 1.05435 0.92865 1.20259 0.88254 0.76214 0.83632 1.90622 1.15927 1.50527 1.86219 1.48579 1.10961 1.69569 1.05230 1.21965 0.94954 1.01177 0.82512 1.22480 0.95718 1.00297 0.94855 0.89809 1.21665 1.00520 0.98756 0.98251 1.21353 0.86470 0.96719 0.88947 0.91693 1.42300 1.07200 1.34724 1.50837 1.19276 0.90322 1.06869 1.21513 0.90920 1.24760 0.98012 0.98417 0.99170 1.69663 1.24930 1.31349 1.31657 0.86130 0.82535 0.80094 0.77471 1.20427 1.21749 1.21745 1.23551 0.79431 1.01006 1.01543 0.89080 0.88166 0.87483 0.91508 0.91639 0.90988 0.76314 0.87964 0.88046 0.92056 0.91638 0.91321 0.93180 0.92877 0.77841 0.93347 0.91193 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 12.60 29.02 0.37 -1.49 16 2 C -0.19 -2.25 7.47 -36.03 -0.27 -2.51 16 3 C 0.18 2.15 1.08 -91.77 -0.10 2.05 16 4 C -0.13 -1.34 8.83 37.16 0.33 -1.01 16 5 O -0.56 -7.71 11.92 -51.78 -0.62 -8.33 16 6 C -0.16 -2.01 4.08 -27.88 -0.11 -2.12 16 7 C 0.53 7.78 7.33 -10.99 -0.08 7.70 16 8 O -0.55 -8.95 12.28 -11.00 -0.14 -9.09 16 9 N -0.61 -9.20 3.33 -170.51 -0.57 -9.76 16 10 C 0.12 1.69 6.48 -3.06 -0.02 1.67 16 11 C -0.11 -1.72 3.16 -88.78 -0.28 -2.00 16 12 H 0.08 1.31 7.99 -51.93 -0.42 0.90 16 13 C -0.13 -1.85 9.16 37.15 0.34 -1.51 16 14 C 0.18 3.19 3.14 -65.78 -0.21 2.99 16 15 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 16 N -0.71 -16.15 5.28 -51.35 -0.27 -16.42 16 17 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 21 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.07 1.15 6.38 -2.53 -0.02 1.13 16 26 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.10 1.26 6.41 -52.49 -0.34 0.92 16 28 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.38 5.31 5.78 45.56 0.26 5.58 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.21 7.60 -51.93 -0.39 0.82 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.39 9.43 7.71 -40.82 -0.31 9.12 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.07 1.10 7.32 -51.93 -0.38 0.72 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -28.69 346.01 -7.56 -36.26 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.59 Total: 13.61 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.30 Total: -1.94 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.11 Total: -51.93 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.75 Total: -17.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.69 -7.56 -36.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214521043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.296 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds