Wall clock time and date at job start Tue Mar 31 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 114.00100 * 2 1 4 4 C 1.53005 * 109.46953 * 184.97426 * 3 2 1 5 5 C 1.50694 * 115.54959 * 320.29564 * 4 3 2 6 6 O 1.21272 * 120.00266 * 99.69962 * 5 4 3 7 7 N 1.34788 * 119.99856 * 279.69644 * 5 4 3 8 8 C 1.47418 * 125.64828 * 174.99027 * 7 5 4 9 9 C 1.54912 * 104.83266 * 204.09244 * 8 7 5 10 10 H 1.09001 * 111.00243 * 81.10017 * 9 8 7 11 11 C 1.53001 * 111.00441 * 204.91432 * 9 8 7 12 12 C 1.55155 * 101.57675 * 322.98868 * 9 8 7 13 13 H 1.09000 * 110.72263 * 277.13454 * 12 9 8 14 14 N 1.46503 * 110.71605 * 154.04163 * 12 9 8 15 15 C 1.36938 * 119.99689 * 154.99743 * 14 12 9 16 16 H 1.08000 * 120.00405 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99905 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00102 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47272 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47185 * 119.99769 * 19 17 15 22 22 H 1.48509 * 109.46948 * 239.99536 * 19 17 15 23 23 C 1.47017 * 125.64798 * 354.67873 * 7 5 4 24 24 C 1.53000 * 117.49234 * 174.62524 * 4 3 2 25 25 C 1.52999 * 60.03050 * 252.49709 * 24 4 3 26 26 H 1.09000 * 109.47139 * 59.99910 * 1 2 3 27 27 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46932 * 299.99858 * 1 2 3 29 29 H 1.08994 * 109.46994 * 64.97450 * 3 2 1 30 30 H 1.09000 * 109.46764 * 304.96837 * 3 2 1 31 31 H 1.09006 * 110.36444 * 322.92852 * 8 7 5 32 32 H 1.09001 * 110.37190 * 85.13713 * 8 7 5 33 33 H 1.08996 * 109.46959 * 58.54456 * 11 9 8 34 34 H 1.08999 * 109.46838 * 178.54304 * 11 9 8 35 35 H 1.09006 * 109.46849 * 298.54385 * 11 9 8 36 36 H 0.97003 * 120.00418 * 335.00273 * 14 12 9 37 37 H 0.97000 * 120.00303 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88289 * 298.39759 * 23 7 5 39 39 H 1.09007 * 109.88076 * 59.55832 * 23 7 5 40 40 H 1.08994 * 117.50589 * 359.97438 * 24 4 3 41 41 H 1.09007 * 117.49232 * 144.99536 * 24 4 3 42 42 H 1.08995 * 117.49555 * 107.50507 * 25 24 4 43 43 H 1.09004 * 117.50110 * 252.52489 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1868 -0.1251 5 6 4.1613 0.0636 0.6568 6 8 4.4585 -0.9714 0.0990 7 7 4.3952 0.2093 1.9762 8 6 4.9066 -0.8380 2.8789 9 6 4.4231 -0.4168 4.2891 10 1 3.3859 -0.7108 4.4504 11 6 5.3300 -0.9975 5.3759 12 6 4.5597 1.1270 4.2169 13 1 5.5847 1.4336 4.4255 14 7 3.6283 1.7736 5.1446 15 6 3.9013 3.0257 5.6271 16 1 4.8034 3.5364 5.3242 17 6 3.0190 3.6383 6.5065 18 7 1.9198 3.0158 6.8762 19 14 3.3911 5.3466 7.1642 20 1 4.6784 5.8250 6.5994 21 1 2.3018 6.2764 6.7714 22 1 3.4889 5.2964 8.6452 23 6 4.1887 1.4408 2.7522 24 6 4.3306 2.4829 -0.2704 25 6 4.1598 1.5513 -1.4720 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7609 1.8142 0.9311 30 1 1.6199 1.8769 -0.8422 31 1 4.4896 -1.8083 2.6090 32 1 5.9956 -0.8709 2.8435 33 1 6.3525 -0.6548 5.2173 34 1 4.9832 -0.6652 6.3544 35 1 5.3005 -2.0862 5.3304 36 1 2.8182 1.3148 5.4171 37 1 1.3031 3.4439 7.4904 38 1 4.8300 2.2336 2.3669 39 1 3.1436 1.7452 2.6934 40 1 3.7740 3.4199 -0.2774 41 1 5.3133 2.5230 0.1996 42 1 3.4908 1.8756 -2.2691 43 1 5.0300 0.9783 -1.7924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215139988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:27 Heat of formation + Delta-G solvation = -40.163795 kcal Electronic energy + Delta-G solvation = -23345.059030 eV Core-core repulsion = 20005.650188 eV Total energy + Delta-G solvation = -3339.408842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18257 -38.26463 -37.29401 -36.11696 -34.03841 -32.34893 -30.71165 -28.40333 -27.49837 -26.56226 -25.51640 -24.09004 -22.76988 -22.48085 -20.97477 -19.91636 -18.52895 -17.16890 -16.99750 -16.16480 -15.94562 -15.77918 -15.44945 -14.97452 -14.44596 -14.23176 -13.70160 -13.54078 -13.24970 -13.03022 -12.76280 -12.53094 -12.48011 -12.14915 -11.90984 -11.67626 -11.44004 -11.39423 -11.15263 -11.03238 -10.79246 -10.62762 -10.59169 -10.33417 -10.23071 -9.97140 -9.78257 -9.58493 -9.45845 -9.01321 -8.22513 -7.10837 -5.87569 -3.18045 2.89460 3.18872 3.36287 3.42632 3.44616 3.49583 3.84184 4.48218 4.60449 4.70965 4.84184 4.94158 5.11466 5.18901 5.19762 5.27082 5.32649 5.41169 5.52958 5.56502 5.57573 5.64981 5.66283 5.71948 5.79106 5.83584 5.88046 5.95840 6.00915 6.03368 6.22953 6.28114 6.42846 6.52787 6.60878 6.68306 6.89221 7.13035 7.61174 7.90702 8.29758 8.50667 9.41961 9.96426 10.31528 11.34451 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.005222 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.699803 B = 5361.090787 C = 5956.224490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.107 3.893 4 C -0.150 4.150 5 C 0.575 3.425 6 O -0.545 6.545 7 N -0.609 5.609 8 C 0.115 3.885 9 C -0.114 4.114 10 H 0.082 0.918 11 C -0.132 4.132 12 C 0.176 3.824 13 H 0.067 0.933 14 N -0.711 5.711 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.076 3.924 24 C -0.153 4.153 25 C -0.144 4.144 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -3.377 -12.400 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.030 3.970 4 C -0.153 4.153 5 C 0.363 3.637 6 O -0.422 6.422 7 N -0.342 5.342 8 C -0.008 4.008 9 C -0.134 4.134 10 H 0.101 0.899 11 C -0.190 4.190 12 C 0.064 3.936 13 H 0.085 0.915 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.050 4.050 24 C -0.190 4.190 25 C -0.182 4.182 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.286 -3.918 -12.686 13.473 hybrid contribution -0.525 1.182 0.502 1.387 sum 1.760 -2.736 -12.185 12.611 Atomic orbital electron populations 1.22741 0.80925 1.02810 0.99966 1.87977 1.19622 1.27050 1.95369 1.21884 0.88884 0.85294 1.00951 1.21253 0.94310 0.97748 1.01978 1.18796 0.77417 0.87065 0.80440 1.90637 1.52932 1.29509 1.69140 1.48413 1.64387 1.14301 1.07082 1.22231 0.98281 0.91586 0.88669 1.22646 1.00499 0.97335 0.92935 0.89925 1.21593 0.98874 0.99511 0.98987 1.21256 0.94948 0.89897 0.87486 0.91467 1.42358 1.24104 1.17628 1.50925 1.19297 1.04701 0.92428 1.21247 0.90935 1.24755 0.96963 0.98683 1.00109 1.69671 1.12267 1.37941 1.37816 0.86141 0.77413 0.84155 0.78590 1.20463 1.21838 1.21796 1.23295 1.01655 0.85445 0.94582 1.23117 1.01320 0.93107 1.01463 1.23082 1.02921 1.01633 0.90541 0.94241 0.89635 0.93741 0.91872 0.92458 0.91132 0.91844 0.92847 0.91456 0.93244 0.77906 0.93420 0.92324 0.91163 0.87552 0.87814 0.87936 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.98 10.08 -35.23 -0.36 -6.34 16 3 C 0.11 1.46 6.01 37.16 0.22 1.69 16 4 C -0.15 -2.16 1.69 -155.62 -0.26 -2.42 16 5 C 0.58 10.20 6.40 -10.98 -0.07 10.13 16 6 O -0.54 -11.32 17.30 5.56 0.10 -11.22 16 7 N -0.61 -10.33 3.33 -170.52 -0.57 -10.90 16 8 C 0.12 1.83 6.35 -2.53 -0.02 1.81 16 9 C -0.11 -1.85 3.27 -88.47 -0.29 -2.14 16 10 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 11 C -0.13 -1.90 9.30 37.16 0.35 -1.55 16 12 C 0.18 3.28 3.07 -66.09 -0.20 3.07 16 13 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 14 N -0.71 -16.45 5.16 -51.65 -0.27 -16.72 16 15 C -0.25 -6.34 9.96 -15.06 -0.15 -6.49 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 19 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.08 1.31 5.91 -3.06 -0.02 1.30 16 24 C -0.15 -1.77 8.92 -26.73 -0.24 -2.01 16 25 C -0.14 -1.70 9.81 -26.70 -0.26 -1.96 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 30 H 0.06 0.64 7.94 -51.93 -0.41 0.22 16 31 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 32 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 33 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.39 9.68 7.76 -40.82 -0.32 9.36 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 0.95 7.13 -51.93 -0.37 0.58 16 39 H 0.07 1.32 7.43 -51.92 -0.39 0.94 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.21 7.72 -51.93 -0.40 0.81 16 42 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -31.31 353.95 -7.27 -38.58 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.29 Total: 8.39 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 0.08 Total: 2.59 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.11 Total: -53.62 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.26 Total: -17.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.31 -7.27 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215139988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.584 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds