Wall clock time and date at job start Tue Mar 31 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00183 * 2 1 4 4 C 1.53001 * 109.47086 * 125.00467 * 3 2 1 5 5 O 1.42898 * 109.46816 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99732 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47220 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.64500 * 179.97438 * 9 7 6 11 11 C 1.54914 * 104.82992 * 204.16642 * 10 9 7 12 12 H 1.09004 * 111.00278 * 81.10732 * 11 10 9 13 13 C 1.53000 * 111.00205 * 204.91932 * 11 10 9 14 14 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 15 15 H 1.09000 * 110.69068 * 277.04987 * 14 11 10 16 16 N 1.46495 * 110.85076 * 153.69955 * 14 11 10 17 17 C 1.36934 * 119.99717 * 160.08604 * 16 14 11 18 18 H 1.08002 * 120.00471 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47480 * 119.99732 * 21 19 17 24 24 H 1.48507 * 109.46999 * 239.99513 * 21 19 17 25 25 C 1.47018 * 125.64981 * 0.02817 * 9 7 6 26 26 H 1.08000 * 120.00237 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00170 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99743 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46832 * 5.00613 * 3 2 1 30 30 H 1.09002 * 109.47041 * 245.00646 * 3 2 1 31 31 H 1.09004 * 109.46989 * 60.00101 * 4 3 2 32 32 H 1.08998 * 109.46823 * 300.00537 * 4 3 2 33 33 H 1.08997 * 109.46928 * 59.99633 * 6 5 4 34 34 H 1.09007 * 109.46777 * 300.00360 * 6 5 4 35 35 H 1.08999 * 110.36956 * 323.01018 * 10 9 7 36 36 H 1.09001 * 110.36709 * 85.22211 * 10 9 7 37 37 H 1.08997 * 109.47294 * 58.54570 * 13 11 10 38 38 H 1.08997 * 109.47279 * 178.55250 * 13 11 10 39 39 H 1.09006 * 109.47100 * 298.55044 * 13 11 10 40 40 H 0.96997 * 120.00433 * 340.08762 * 16 14 11 41 41 H 0.97005 * 120.00291 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.88241 * 298.32048 * 25 9 7 43 43 H 1.09000 * 109.88049 * 59.33177 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1819 6 6 4.6888 2.6994 2.2509 7 6 5.3799 4.0351 2.1542 8 8 5.0955 4.8015 1.2584 9 7 6.3133 4.3782 3.0639 10 6 7.0641 5.6468 3.0879 11 6 8.3664 5.3221 3.8615 12 1 9.0974 4.8412 3.2114 13 6 8.9519 6.5819 4.5026 14 6 7.8508 4.3334 4.9439 15 1 7.4295 4.8749 5.7909 16 7 8.9218 3.4350 5.3820 17 6 8.8184 2.7794 6.5798 18 1 7.9474 2.9250 7.2017 19 6 9.8334 1.9285 6.9952 20 7 10.8950 1.7514 6.2376 21 14 9.6920 1.0337 8.6288 22 1 8.4114 1.4008 9.2850 23 1 9.7263 -0.4324 8.3948 24 1 10.8261 1.4216 9.5055 25 6 6.7521 3.5491 4.1959 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6212 1.4026 -0.9314 31 1 3.7401 0.5064 1.0919 32 1 2.4774 1.2354 2.1129 33 1 5.4282 1.9015 2.1827 34 1 4.1657 2.6295 3.2047 35 1 7.2961 5.9696 2.0730 36 1 6.4933 6.4156 3.6086 37 1 8.2183 7.0196 5.1796 38 1 9.8512 6.3213 5.0606 39 1 9.2033 7.3025 3.7243 40 1 9.7042 3.3045 4.8237 41 1 11.6042 1.1565 6.5277 42 1 5.9120 3.3594 4.8641 43 1 7.1548 2.6048 3.8296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216913482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:12 Heat of formation + Delta-G solvation = -53.276052 kcal Electronic energy + Delta-G solvation = -21937.450301 eV Core-core repulsion = 18597.472869 eV Total energy + Delta-G solvation = -3339.977433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90725 -38.26931 -37.20721 -35.17654 -34.11205 -32.59169 -30.79929 -30.06447 -28.05139 -27.51098 -25.43974 -23.99816 -23.16745 -21.59476 -20.14753 -20.00008 -19.11779 -17.21982 -17.09554 -16.64377 -16.51090 -15.63780 -15.35512 -15.32534 -14.62477 -14.14064 -13.74559 -13.67110 -13.51951 -13.17850 -13.02445 -12.81132 -12.51249 -12.34014 -12.09279 -11.67353 -11.57537 -11.42640 -11.32511 -11.19311 -11.04597 -10.79839 -10.64657 -10.28197 -10.00491 -9.82938 -9.80807 -9.67720 -9.58117 -9.06100 -8.37044 -7.15450 -5.90747 -3.21888 1.92723 2.77802 2.83047 3.34725 3.41007 3.43134 3.85216 4.46278 4.61019 4.70256 4.80961 4.95079 5.01072 5.09518 5.10422 5.14249 5.18549 5.22785 5.25017 5.51193 5.55363 5.58928 5.69752 5.72266 5.77354 5.80465 5.86688 5.96012 6.15320 6.21005 6.31230 6.31707 6.43431 6.44131 6.49643 6.57001 6.81519 6.97558 7.57997 7.73949 8.26275 8.35192 9.38762 9.92394 10.27285 11.31114 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003575 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.144333 B = 7829.235840 C = 9474.240128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.366 6.366 6 C 0.050 3.950 7 C 0.528 3.472 8 O -0.535 6.535 9 N -0.613 5.613 10 C 0.116 3.884 11 C -0.114 4.114 12 H 0.084 0.916 13 C -0.133 4.133 14 C 0.178 3.822 15 H 0.067 0.933 16 N -0.712 5.712 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.068 3.932 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.060 0.940 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.824 0.903 -8.138 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.285 6.285 6 C -0.029 4.029 7 C 0.316 3.684 8 O -0.412 6.412 9 N -0.348 5.348 10 C -0.006 4.006 11 C -0.134 4.134 12 H 0.102 0.898 13 C -0.191 4.191 14 C 0.066 3.934 15 H 0.085 0.915 16 N -0.352 5.352 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.057 4.057 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.091 1.344 -8.623 16.575 hybrid contribution 0.272 -1.074 1.008 1.498 sum -13.820 0.270 -7.615 15.781 Atomic orbital electron populations 1.23899 0.95888 1.02020 1.00848 1.22827 0.96028 0.98065 1.00127 1.20638 0.97920 0.95830 0.98610 1.22486 0.94042 0.86255 0.98473 1.87955 1.54425 1.37313 1.48768 1.22155 0.93001 0.96153 0.91632 1.19817 0.79361 0.88027 0.81214 1.90688 1.63759 1.52831 1.33918 1.48454 1.38631 1.19547 1.28202 1.22255 0.91715 0.85801 1.00865 1.22670 0.95693 0.97367 0.97627 0.89776 1.21602 1.01553 0.95843 1.00068 1.21283 0.88794 0.89811 0.93561 0.91495 1.42363 1.19522 1.51133 1.22137 1.19277 1.03312 1.19592 0.95768 0.90907 1.24772 0.96660 1.00326 0.98712 1.69666 1.09154 1.40935 1.37804 0.86128 0.77342 0.79384 0.83347 1.20446 1.21783 1.21762 1.23406 0.99266 0.96014 0.87063 0.88424 0.88324 0.87104 0.90535 0.89927 0.92892 0.93013 0.90058 0.90295 0.90879 0.91562 0.92748 0.91412 0.93121 0.77831 0.93351 0.92213 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 14.32 29.02 0.42 -0.97 16 2 C -0.15 -1.22 9.52 -36.02 -0.34 -1.56 16 3 C -0.09 -0.88 6.03 -27.88 -0.17 -1.05 16 4 C 0.06 0.68 5.92 37.16 0.22 0.90 16 5 O -0.37 -5.32 9.88 -55.14 -0.54 -5.87 16 6 C 0.05 0.69 5.61 36.00 0.20 0.89 16 7 C 0.53 8.92 7.93 -10.99 -0.09 8.84 16 8 O -0.54 -10.86 16.75 -14.35 -0.24 -11.10 16 9 N -0.61 -9.79 3.33 -170.52 -0.57 -10.35 16 10 C 0.12 1.73 6.38 -2.53 -0.02 1.71 16 11 C -0.11 -1.74 3.26 -88.33 -0.29 -2.03 16 12 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 13 C -0.13 -1.81 9.30 37.16 0.35 -1.47 16 14 C 0.18 3.18 3.08 -65.96 -0.20 2.97 16 15 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 16 N -0.71 -16.15 5.18 -51.52 -0.27 -16.41 16 17 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 21 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.07 1.12 6.23 -3.07 -0.02 1.10 16 26 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 27 H 0.10 0.60 8.06 -52.48 -0.42 0.17 16 28 H 0.11 0.78 8.06 -52.48 -0.42 0.36 16 29 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 37 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.39 9.49 7.72 -40.82 -0.32 9.17 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -30.67 361.08 -8.07 -38.74 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.41 Total: 6.66 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.19 Total: 2.55 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.11 Total: -52.53 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.78 Total: -16.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.67 -8.07 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216913482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.538 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds