Wall clock time and date at job start Tue Mar 31 2020 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99955 * 2 1 4 4 O 1.42893 * 109.47258 * 135.00173 * 3 2 1 5 5 C 1.42894 * 114.00224 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47209 * 329.99619 * 5 4 3 7 7 C 1.53003 * 109.47459 * 89.99904 * 5 4 3 8 8 C 1.50704 * 109.47233 * 210.00080 * 5 4 3 9 9 O 1.21275 * 120.00158 * 346.76214 * 8 5 4 10 10 N 1.34778 * 119.99643 * 166.76359 * 8 5 4 11 11 C 1.47428 * 125.64297 * 184.84518 * 10 8 5 12 12 C 1.54910 * 104.82764 * 204.09160 * 11 10 8 13 13 H 1.08998 * 111.00625 * 81.06933 * 12 11 10 14 14 C 1.53003 * 111.00070 * 204.91461 * 12 11 10 15 15 C 1.55154 * 101.58400 * 322.98924 * 12 11 10 16 16 H 1.09000 * 110.72217 * 276.96116 * 15 12 11 17 17 N 1.46501 * 110.71941 * 153.86648 * 15 12 11 18 18 C 1.36936 * 120.00112 * 154.99971 * 17 15 12 19 19 H 1.08000 * 119.99973 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00379 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00266 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46995 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46884 * 120.00026 * 22 20 18 25 25 H 1.48494 * 109.47286 * 240.00296 * 22 20 18 26 26 C 1.47020 * 125.65170 * 4.53834 * 10 8 5 27 27 H 1.07996 * 120.00312 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.00079 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99814 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46619 * 15.00136 * 3 2 1 31 31 H 1.08998 * 109.46946 * 255.00083 * 3 2 1 32 32 H 1.09000 * 109.47115 * 177.58173 * 7 5 4 33 33 H 1.08996 * 109.46860 * 297.57991 * 7 5 4 34 34 H 1.08996 * 109.46774 * 57.57410 * 7 5 4 35 35 H 1.08997 * 110.36823 * 322.92468 * 11 10 8 36 36 H 1.09003 * 110.36734 * 85.14332 * 11 10 8 37 37 H 1.09000 * 109.47350 * 58.55144 * 14 12 11 38 38 H 1.09001 * 109.46997 * 178.54921 * 14 12 11 39 39 H 1.08997 * 109.47407 * 298.54478 * 14 12 11 40 40 H 0.97001 * 120.00186 * 334.99795 * 17 15 12 41 41 H 0.96999 * 120.00249 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.88127 * 298.39072 * 26 10 8 43 43 H 1.08995 * 109.88450 * 59.56097 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9076 2.4353 1.0328 6 1 3.9127 2.9320 0.0625 7 6 3.3029 3.3709 2.0816 8 6 5.3201 2.0862 1.4257 9 8 5.5756 0.9790 1.8493 10 7 6.2992 3.0047 1.3064 11 6 7.7329 2.7695 1.5565 12 6 8.3109 4.1665 1.8943 13 1 8.1181 4.4279 2.9347 14 6 9.8076 4.2305 1.5834 15 6 7.5037 5.0783 0.9329 16 1 7.9524 5.0845 -0.0604 17 7 7.4105 6.4397 1.4660 18 6 7.2182 7.4961 0.6161 19 1 7.1347 7.3256 -0.4470 20 6 7.1293 8.7860 1.1212 21 7 7.2305 8.9938 2.4169 22 14 6.8676 10.2272 -0.0382 23 1 6.7879 9.7303 -1.4354 24 1 5.6027 10.9213 0.3128 25 1 8.0037 11.1753 0.0863 26 6 6.1152 4.4054 0.8993 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3854 2.1160 0.2660 31 1 2.4754 1.4868 -0.9926 32 1 3.9228 4.2627 2.1735 33 1 2.2968 3.6576 1.7757 34 1 3.2583 2.8587 3.0427 35 1 7.8647 2.0907 2.3990 36 1 8.2120 2.3643 0.6652 37 1 9.9695 4.0079 0.5287 38 1 10.1824 5.2296 1.8055 39 1 10.3372 3.4997 2.1945 40 1 7.4851 6.5929 2.4209 41 1 7.1688 9.8952 2.7699 42 1 5.7052 4.4473 -0.1098 43 1 5.4444 4.9088 1.5955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216923756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:57 Heat of formation + Delta-G solvation = -46.838640 kcal Electronic energy + Delta-G solvation = -22614.073237 eV Core-core repulsion = 19274.374951 eV Total energy + Delta-G solvation = -3339.698285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10630 -38.37477 -37.16995 -34.23060 -34.11912 -32.72917 -31.09319 -30.63251 -27.60192 -26.48675 -26.29964 -24.22956 -23.41997 -21.43464 -20.32600 -20.01000 -19.11745 -17.38557 -17.18883 -16.60171 -15.97288 -15.72966 -15.38913 -14.89207 -14.54917 -13.95810 -13.76552 -13.61000 -13.20321 -13.13990 -12.98490 -12.72461 -12.63411 -12.22298 -12.10926 -12.04019 -11.58184 -11.47503 -11.19335 -11.05032 -11.03401 -10.76758 -10.62620 -10.28398 -10.25807 -10.02488 -9.81496 -9.58646 -9.36258 -9.05293 -8.35246 -7.15534 -5.90817 -3.21961 1.89704 2.77291 2.91865 3.34648 3.40886 3.43058 3.87222 4.45389 4.55180 4.75654 4.86300 4.91706 5.00472 5.02628 5.10555 5.17656 5.21903 5.27990 5.51843 5.52548 5.59072 5.61885 5.68585 5.75500 5.81619 5.87238 5.97063 6.08076 6.16463 6.24024 6.31941 6.32613 6.39638 6.47500 6.51822 6.58445 6.81631 7.01226 7.57872 7.74864 8.26133 8.35838 9.38618 9.92077 10.27037 11.30970 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.004117 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.808016 B = 6799.789862 C = 8089.526777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.084 3.916 4 O -0.356 6.356 5 C 0.077 3.923 6 H 0.084 0.916 7 C -0.174 4.174 8 C 0.529 3.471 9 O -0.534 6.534 10 N -0.612 5.612 11 C 0.115 3.885 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.132 4.132 15 C 0.178 3.822 16 H 0.069 0.931 17 N -0.711 5.711 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.928 5.928 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.066 3.934 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.059 0.941 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -12.807 -4.335 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.008 3.992 4 O -0.274 6.274 5 C 0.016 3.984 6 H 0.102 0.898 7 C -0.231 4.231 8 C 0.317 3.683 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.008 4.008 12 C -0.135 4.135 13 H 0.102 0.898 14 C -0.190 4.190 15 C 0.065 3.935 16 H 0.087 0.913 17 N -0.350 5.350 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.575 5.575 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.060 4.060 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.627 -13.461 -4.128 15.561 hybrid contribution -0.357 1.221 -0.492 1.364 sum -6.984 -12.240 -4.619 14.830 Atomic orbital electron populations 1.23824 0.95500 1.02237 1.00455 1.22738 0.95583 0.98235 0.99850 1.21661 0.89133 0.96059 0.92378 1.88046 1.43883 1.35410 1.60045 1.21833 0.89396 0.86890 1.00296 0.89822 1.22283 1.01797 0.99649 0.99408 1.19962 0.85723 0.84108 0.78549 1.90677 1.83139 1.21825 1.45382 1.48454 1.07201 1.11758 1.67320 1.22266 0.79909 0.97740 1.00866 1.22659 0.95913 0.93765 1.01122 0.89805 1.21594 0.94077 1.02357 1.00977 1.21247 0.90320 0.85555 0.96370 0.91289 1.42373 1.85931 0.99399 1.07325 1.19285 1.42531 0.85925 0.90255 0.90912 1.24767 1.02264 0.97519 0.95869 1.69667 1.56388 1.20789 1.10671 0.86133 0.77425 0.82814 0.79862 1.20460 1.21786 1.21766 1.23499 1.03376 0.79659 0.99470 0.88399 0.87815 0.86483 0.92484 0.92188 0.89864 0.91368 0.91176 0.90870 0.91613 0.92807 0.91397 0.93182 0.77843 0.93351 0.92280 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 14.31 29.02 0.42 -1.08 16 2 C -0.15 -1.47 9.89 -36.02 -0.36 -1.82 16 3 C 0.08 0.92 6.16 36.01 0.22 1.14 16 4 O -0.36 -5.25 9.54 -54.78 -0.52 -5.77 16 5 C 0.08 1.09 2.53 -27.88 -0.07 1.02 16 6 H 0.08 1.02 7.51 -51.93 -0.39 0.63 16 7 C -0.17 -2.24 9.44 37.16 0.35 -1.89 16 8 C 0.53 9.01 7.16 -10.98 -0.08 8.93 16 9 O -0.53 -10.90 16.78 -13.99 -0.23 -11.13 16 10 N -0.61 -9.75 3.33 -170.51 -0.57 -10.32 16 11 C 0.11 1.71 6.40 -2.53 -0.02 1.69 16 12 C -0.11 -1.76 3.27 -88.47 -0.29 -2.05 16 13 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 14 C -0.13 -1.82 9.29 37.16 0.35 -1.47 16 15 C 0.18 3.15 3.08 -66.09 -0.20 2.95 16 16 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 17 N -0.71 -16.01 5.15 -51.65 -0.27 -16.28 16 18 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.36 13.06 55.49 0.72 -25.63 16 22 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.07 1.07 5.88 -3.06 -0.02 1.05 16 27 H 0.10 0.71 7.90 -52.49 -0.41 0.29 16 28 H 0.10 0.70 8.06 -52.48 -0.42 0.27 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.06 0.54 7.64 -51.93 -0.40 0.15 16 31 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.08 1.12 5.59 -51.93 -0.29 0.83 16 33 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.11 7.99 -51.93 -0.42 0.69 16 36 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.39 9.43 7.76 -40.82 -0.32 9.12 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 43 H 0.08 1.34 5.86 -51.93 -0.30 1.04 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -30.46 354.66 -7.59 -38.05 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.10 Total: 7.98 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 0.05 Total: 1.71 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.11 Total: -52.23 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.76 Total: -16.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.46 -7.59 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216923756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.790 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds