Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 120.00138 * 2 1 4 4 O 1.42900 * 109.47196 * 134.99706 * 3 2 1 5 5 C 1.42900 * 113.99775 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47451 * 30.00010 * 5 4 3 7 7 C 1.53002 * 109.46961 * 269.99834 * 5 4 3 8 8 C 1.50704 * 109.46976 * 150.00003 * 5 4 3 9 9 O 1.21278 * 119.99855 * 12.50549 * 8 5 4 10 10 N 1.34770 * 119.99907 * 192.50268 * 8 5 4 11 11 C 1.47426 * 125.64702 * 175.10754 * 10 8 5 12 12 C 1.54911 * 104.83174 * 204.09558 * 11 10 8 13 13 H 1.08997 * 111.00153 * 81.06793 * 12 11 10 14 14 C 1.53006 * 111.00498 * 204.92084 * 12 11 10 15 15 C 1.55157 * 101.58165 * 322.99310 * 12 11 10 16 16 H 1.08993 * 110.87139 * 277.06346 * 15 12 11 17 17 N 1.46503 * 110.71728 * 153.86742 * 15 12 11 18 18 C 1.36936 * 120.00198 * 160.02691 * 17 15 12 19 19 H 1.07998 * 119.99729 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00014 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99844 * 180.27382 * 20 18 17 23 23 H 1.48497 * 109.47255 * 269.72236 * 22 20 18 24 24 H 1.48503 * 109.47262 * 29.72281 * 22 20 18 25 25 H 1.48498 * 109.47229 * 149.72033 * 22 20 18 26 26 C 1.47024 * 125.64934 * 355.07340 * 10 8 5 27 27 H 1.08001 * 120.00400 * 180.02562 * 1 2 3 28 28 H 1.08006 * 120.00279 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.00279 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.46956 * 14.99282 * 3 2 1 31 31 H 1.08997 * 109.46417 * 254.99671 * 3 2 1 32 32 H 1.09001 * 109.47315 * 304.75157 * 7 5 4 33 33 H 1.08997 * 109.47311 * 64.75653 * 7 5 4 34 34 H 1.09006 * 109.46841 * 184.75316 * 7 5 4 35 35 H 1.08994 * 110.36814 * 322.93652 * 11 10 8 36 36 H 1.09003 * 110.36519 * 85.15483 * 11 10 8 37 37 H 1.09002 * 109.47205 * 172.19812 * 14 12 11 38 38 H 1.09002 * 109.46626 * 292.19421 * 14 12 11 39 39 H 1.08994 * 109.47214 * 52.19717 * 14 12 11 40 40 H 0.97000 * 120.00044 * 340.01665 * 17 15 12 41 41 H 0.97002 * 119.99687 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.88580 * 59.55673 * 26 10 8 43 43 H 1.08997 * 110.01377 * 298.46245 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4349 1.0320 6 1 3.2845 3.2948 0.7880 7 6 5.0705 2.3502 0.0405 8 6 4.4506 2.5883 2.4298 9 8 4.3897 1.6609 3.2089 10 7 5.0031 3.7560 2.8138 11 6 5.4774 4.0764 4.1724 12 6 5.4251 5.6223 4.2564 13 1 4.4138 5.9679 4.4707 14 6 6.4145 6.1487 5.2981 15 6 5.8591 6.0270 2.8228 16 1 6.9451 6.0239 2.7305 17 7 5.3144 7.3398 2.4676 18 6 5.8810 8.0646 1.4533 19 1 6.7297 7.6686 0.9155 20 6 5.3645 9.3082 1.1164 21 7 4.3299 9.7905 1.7715 22 14 6.1327 10.2935 -0.2723 23 1 7.2015 11.1681 0.2736 24 1 6.7161 9.3654 -1.2740 25 1 5.0913 11.1304 -0.9205 26 6 5.2334 4.9211 1.9471 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2658 31 1 2.4755 1.4866 -0.9926 32 1 5.6460 1.4444 0.2317 33 1 4.6794 2.3243 -0.9765 34 1 5.7143 3.2217 0.1601 35 1 4.8179 3.6334 4.9187 36 1 6.4987 3.7216 4.3112 37 1 6.4586 7.2363 5.2403 38 1 6.0863 5.8508 6.2939 39 1 7.4033 5.7341 5.1021 40 1 4.5522 7.6955 2.9508 41 1 3.9692 10.6598 1.5363 42 1 4.2868 5.2676 1.5325 43 1 5.9165 4.6564 1.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216923757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = -46.553949 kcal Electronic energy + Delta-G solvation = -22641.590468 eV Core-core repulsion = 19301.904528 eV Total energy + Delta-G solvation = -3339.685940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10337 -38.36513 -37.16458 -34.21830 -34.11135 -32.73928 -31.08923 -30.63581 -27.59141 -26.49683 -26.28421 -24.26908 -23.40742 -21.41577 -20.29606 -20.00154 -19.13304 -17.32036 -17.17228 -16.63666 -15.98205 -15.83070 -15.33680 -14.71217 -14.61765 -14.12508 -13.69930 -13.56364 -13.24105 -13.06503 -12.89042 -12.79157 -12.49027 -12.44629 -12.24607 -11.91208 -11.59043 -11.50195 -11.19475 -11.06473 -11.01527 -10.78544 -10.64966 -10.30025 -10.13576 -9.99839 -9.81961 -9.69213 -9.29337 -9.04398 -8.35255 -7.15378 -5.90697 -3.21856 1.93436 2.77412 2.92648 3.35029 3.40787 3.42349 3.88982 4.45175 4.56110 4.78024 4.85655 4.96439 4.98655 5.03244 5.09922 5.17254 5.20873 5.33744 5.46597 5.53527 5.60131 5.62291 5.65914 5.74881 5.80086 5.86158 5.96966 6.00741 6.18795 6.21964 6.34259 6.34889 6.42098 6.44591 6.51438 6.57863 6.81834 7.02271 7.57482 7.75281 8.26376 8.36355 9.38770 9.92332 10.27292 11.31088 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.004276 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.802272 B = 6546.708288 C = 7734.399558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.084 3.916 4 O -0.356 6.356 5 C 0.075 3.925 6 H 0.086 0.914 7 C -0.173 4.173 8 C 0.530 3.470 9 O -0.534 6.534 10 N -0.612 5.612 11 C 0.116 3.884 12 C -0.113 4.113 13 H 0.084 0.916 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.067 0.933 17 N -0.712 5.712 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.067 3.933 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -13.764 -1.507 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C 0.008 3.992 4 O -0.274 6.274 5 C 0.014 3.986 6 H 0.104 0.896 7 C -0.231 4.231 8 C 0.317 3.683 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.006 4.006 12 C -0.133 4.133 13 H 0.102 0.898 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.085 0.915 17 N -0.352 5.352 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.217 1.217 26 C -0.059 4.059 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.663 -14.390 -1.161 14.532 hybrid contribution -0.010 0.985 -0.969 1.381 sum -1.672 -13.405 -2.130 13.676 Atomic orbital electron populations 1.23834 0.95546 1.02283 1.00270 1.22711 0.95604 0.98126 1.00039 1.21668 0.88816 0.96116 0.92647 1.88041 1.44139 1.34938 1.60268 1.21828 0.94071 0.89267 0.93406 0.89571 1.22284 0.98149 1.03917 0.98712 1.19954 0.78118 0.81435 0.88828 1.90679 1.57052 1.38711 1.54568 1.48457 1.60401 1.13679 1.12193 1.22262 0.99347 0.95329 0.83711 1.22626 1.00823 0.92947 0.96924 0.89780 1.21610 0.98076 1.02228 0.97200 1.21245 0.96753 0.85603 0.89892 0.91499 1.42368 1.37471 1.14507 1.40823 1.19234 1.11015 0.98535 1.09270 0.90957 1.24763 0.98137 0.97789 0.99697 1.69658 1.25432 1.19391 1.43088 0.86202 0.78185 0.80110 0.81720 1.21589 1.20645 1.21727 1.23479 1.01610 0.86052 0.94727 0.87804 0.88357 0.86531 0.92529 0.92057 0.91198 0.91311 0.90178 0.90990 0.91574 0.91300 0.93126 0.92800 0.77845 0.93310 0.90842 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 14.31 29.02 0.42 -1.19 16 2 C -0.15 -1.52 9.89 -36.02 -0.36 -1.88 16 3 C 0.08 0.96 6.16 36.01 0.22 1.18 16 4 O -0.36 -5.32 9.54 -54.83 -0.52 -5.84 16 5 C 0.08 1.08 2.53 -27.88 -0.07 1.00 16 6 H 0.09 1.13 7.49 -51.93 -0.39 0.75 16 7 C -0.17 -2.08 9.44 37.16 0.35 -1.73 16 8 C 0.53 9.06 7.17 -10.99 -0.08 8.98 16 9 O -0.53 -10.94 16.84 -14.03 -0.24 -11.18 16 10 N -0.61 -9.80 3.33 -170.52 -0.57 -10.37 16 11 C 0.12 1.73 6.36 -2.53 -0.02 1.72 16 12 C -0.11 -1.74 3.25 -88.47 -0.29 -2.02 16 13 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 14 C -0.13 -1.82 9.31 37.16 0.35 -1.48 16 15 C 0.18 3.16 3.06 -66.10 -0.20 2.95 16 16 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 17 N -0.71 -16.07 5.18 -51.65 -0.27 -16.34 16 18 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 22 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.07 1.09 5.81 -3.06 -0.02 1.08 16 27 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.10 0.80 7.90 -52.48 -0.41 0.39 16 29 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.06 0.61 7.80 -51.93 -0.41 0.21 16 31 H 0.06 0.60 7.98 -51.93 -0.41 0.18 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.69 7.98 -51.93 -0.41 0.28 16 34 H 0.08 0.96 5.52 -51.93 -0.29 0.67 16 35 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.39 9.44 7.71 -40.82 -0.31 9.13 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.07 1.29 7.82 -51.93 -0.41 0.88 16 43 H 0.06 0.96 6.04 -51.93 -0.31 0.65 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -30.54 354.68 -7.59 -38.13 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.10 Total: 8.02 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 0.06 Total: 1.84 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.11 Total: -52.37 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.76 Total: -17.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.54 -7.59 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216923757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.420 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds