Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00132 * 2 1 4 4 C 1.50705 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.46934 * 95.00306 * 4 2 1 6 6 H 1.09001 * 109.47118 * 55.00329 * 5 4 2 7 7 C 1.52998 * 109.47230 * 294.99936 * 5 4 2 8 8 C 1.50704 * 109.47032 * 174.99986 * 5 4 2 9 9 O 1.21278 * 120.00106 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00002 * 179.97438 * 8 5 4 11 11 C 1.46498 * 120.00040 * 179.97438 * 10 8 5 12 12 H 1.09007 * 110.88089 * 31.12891 * 11 10 8 13 13 C 1.55127 * 111.22780 * 267.21381 * 11 10 8 14 14 N 1.47418 * 104.72049 * 279.17514 * 13 11 10 15 15 C 1.36939 * 125.64946 * 155.81793 * 14 13 11 16 16 H 1.08004 * 119.99325 * 9.51727 * 15 14 13 17 17 C 1.38809 * 120.00199 * 189.51086 * 15 14 13 18 18 N 1.31623 * 119.99774 * 208.93706 * 17 15 14 19 19 Si 1.86800 * 119.99975 * 28.94163 * 17 15 14 20 20 H 1.48494 * 109.47052 * 275.29749 * 19 17 15 21 21 H 1.48497 * 109.47095 * 155.29577 * 19 17 15 22 22 H 1.48506 * 109.46908 * 35.29899 * 19 17 15 23 23 C 1.47018 * 108.70509 * 335.55383 * 14 13 11 24 24 C 1.54323 * 107.27391 * 1.28535 * 23 14 13 25 25 H 1.08992 * 110.72354 * 263.65910 * 24 23 14 26 26 O 1.42897 * 110.72146 * 140.55188 * 24 23 14 27 27 H 1.07995 * 119.99957 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00233 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47067 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46943 * 299.99484 * 3 2 1 31 31 H 1.08999 * 109.47170 * 59.99365 * 3 2 1 32 32 H 1.09002 * 109.46790 * 335.00524 * 4 2 1 33 33 H 1.08998 * 109.47395 * 215.00648 * 4 2 1 34 34 H 1.09001 * 109.47391 * 300.00226 * 7 5 4 35 35 H 1.09006 * 109.47077 * 60.00382 * 7 5 4 36 36 H 1.08997 * 109.47454 * 180.02562 * 7 5 4 37 37 H 0.97001 * 119.99840 * 0.02562 * 10 8 5 38 38 H 1.09002 * 110.49644 * 160.33195 * 13 11 10 39 39 H 1.09000 * 110.34346 * 37.94214 * 13 11 10 40 40 H 0.96999 * 120.00059 * 4.82165 * 18 17 15 41 41 H 1.09002 * 109.88762 * 120.70676 * 23 14 13 42 42 H 1.09000 * 109.88266 * 241.87111 * 23 14 13 43 43 H 0.96698 * 113.99483 * 61.46274 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9001 7 6 1.1488 -1.9557 -2.2316 8 6 3.2854 -2.9235 -1.4267 9 8 3.5766 -3.4513 -0.3744 10 7 3.7281 -3.4455 -2.5877 11 6 4.5626 -4.6496 -2.5784 12 1 4.3080 -5.2923 -1.7356 13 6 6.0709 -4.2875 -2.5627 14 7 6.3969 -3.9796 -3.9670 15 6 7.4292 -3.1860 -4.3912 16 1 8.1766 -2.8504 -3.6875 17 6 7.5149 -2.8130 -5.7255 18 7 8.6901 -2.5727 -6.2674 19 14 5.9625 -2.6521 -6.7519 20 1 5.5842 -3.9836 -7.2894 21 1 6.2083 -1.7154 -7.8777 22 1 4.8608 -2.1291 -5.9044 23 6 5.4341 -4.6707 -4.8370 24 6 4.4435 -5.4191 -3.9205 25 1 4.7419 -6.4603 -3.7988 26 8 3.1136 -5.3331 -4.4363 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1059 0.0005 30 1 1.8003 1.8766 -0.8901 31 1 1.8001 1.8767 0.8899 32 1 1.4385 -2.0853 0.4352 33 1 2.9742 -1.1987 0.5901 34 1 0.5991 -2.7747 -1.7677 35 1 0.5283 -1.0595 -2.2385 36 1 1.4081 -2.2264 -3.2551 37 1 3.4949 -3.0235 -3.4294 38 1 6.6628 -5.1332 -2.2124 39 1 6.2447 -3.4151 -1.9328 40 1 9.5001 -2.7235 -5.7557 41 1 4.8979 -3.9441 -5.4474 42 1 5.9567 -5.3817 -5.4769 43 1 3.0044 -5.7318 -5.3104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220190407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -49.389303 kcal Electronic energy + Delta-G solvation = -23276.371921 eV Core-core repulsion = 19936.563030 eV Total energy + Delta-G solvation = -3339.808891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01035 -38.39766 -36.69173 -35.37070 -33.84096 -32.83111 -31.81425 -28.82261 -27.78865 -27.39845 -27.02059 -24.27604 -23.20683 -20.94013 -20.33418 -19.65890 -18.46344 -17.65436 -17.15012 -16.85588 -15.95998 -15.42899 -15.15606 -14.66710 -14.54691 -14.21840 -14.03747 -13.58191 -13.40219 -13.22979 -13.03301 -12.69665 -12.49360 -12.31302 -12.10264 -11.88586 -11.78429 -11.35434 -11.27300 -11.21719 -11.03861 -10.91980 -10.80504 -10.48434 -10.05234 -9.60299 -9.44794 -9.26778 -9.08888 -8.74381 -8.49522 -7.16126 -6.43557 -3.25100 2.08648 2.91381 3.32171 3.43170 3.45374 3.61803 4.23809 4.54838 4.67565 4.77416 4.83931 4.87449 5.02783 5.04783 5.11953 5.19774 5.31123 5.39996 5.43025 5.47114 5.52425 5.70155 5.76468 5.78057 5.81033 5.83527 5.88826 5.95884 6.12901 6.16061 6.23240 6.34309 6.46926 6.48431 6.52518 6.77601 6.88111 7.59729 7.72452 7.85784 8.26913 8.52116 8.94503 9.49436 10.15298 11.05514 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.005006 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.119785 B = 5592.330205 C = 6023.671804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.105 4.105 6 H 0.098 0.902 7 C -0.144 4.144 8 C 0.519 3.481 9 O -0.553 6.553 10 N -0.694 5.694 11 C 0.138 3.862 12 H 0.099 0.901 13 C 0.123 3.877 14 N -0.602 5.602 15 C -0.332 4.332 16 H 0.079 0.921 17 C -0.013 4.013 18 N -0.911 5.911 19 Si 1.056 2.944 20 H -0.296 1.296 21 H -0.298 1.298 22 H -0.294 1.294 23 C 0.087 3.913 24 C 0.083 3.917 25 H 0.079 0.921 26 O -0.559 6.559 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.405 0.595 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.265 0.735 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 0.674 7.681 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.117 4.117 3 C -0.180 4.180 4 C -0.104 4.104 5 C -0.126 4.126 6 H 0.116 0.884 7 C -0.201 4.201 8 C 0.306 3.694 9 O -0.431 6.431 10 N -0.344 5.344 11 C 0.032 3.968 12 H 0.117 0.883 13 C -0.004 4.004 14 N -0.331 5.331 15 C -0.459 4.459 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.550 5.550 19 Si 0.889 3.111 20 H -0.224 1.224 21 H -0.226 1.226 22 H -0.222 1.222 23 C -0.038 4.038 24 C 0.023 3.977 25 H 0.096 0.904 26 O -0.363 6.363 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -16.613 1.092 7.479 18.252 hybrid contribution 0.636 -0.517 0.420 0.921 sum -15.978 0.575 7.898 17.833 Atomic orbital electron populations 1.23644 0.95250 1.01656 1.03293 1.21786 0.95404 0.95709 0.98809 1.20888 1.00478 0.94690 1.01906 1.20511 1.00734 0.94127 0.94989 1.21208 0.97018 0.96320 0.98077 0.88434 1.21820 0.96101 1.02428 0.99769 1.20521 0.79826 0.85458 0.83628 1.90655 1.59146 1.62333 1.30989 1.45553 1.51293 1.28537 1.09027 1.22256 0.91990 0.86195 0.96366 0.88336 1.22132 0.90780 0.99179 0.88307 1.44659 1.33651 1.55481 0.99314 1.20024 1.01037 1.29156 0.95643 0.90313 1.25756 1.02904 0.98565 0.94223 1.70882 0.97554 1.49688 1.36919 0.83938 0.75788 0.75921 0.75441 1.22409 1.22633 1.22163 1.22376 0.91812 0.95403 0.94252 1.23200 0.82422 0.98369 0.93732 0.90366 1.86462 1.28241 1.83424 1.38217 0.88702 0.88481 0.91730 0.91525 0.91656 0.90758 0.90350 0.92267 0.91251 0.91931 0.75978 0.94338 0.92708 0.92472 0.94633 0.93860 0.77466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 12.54 29.01 0.36 -1.49 16 2 C -0.12 -1.20 4.79 -101.06 -0.48 -1.68 16 3 C -0.12 -1.13 10.05 36.01 0.36 -0.77 16 4 C -0.07 -0.80 4.13 -27.88 -0.12 -0.91 16 5 C -0.10 -1.35 2.71 -91.77 -0.25 -1.60 16 6 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.14 -1.59 8.72 37.16 0.32 -1.26 16 8 C 0.52 8.52 7.15 -10.98 -0.08 8.44 16 9 O -0.55 -10.59 15.56 5.56 0.09 -10.51 16 10 N -0.69 -11.70 4.71 -51.61 -0.24 -11.94 16 11 C 0.14 2.41 3.31 -65.66 -0.22 2.20 16 12 H 0.10 1.68 7.54 -51.92 -0.39 1.29 16 13 C 0.12 2.51 6.95 -2.41 -0.02 2.49 16 14 N -0.60 -14.28 3.28 -169.94 -0.56 -14.84 16 15 C -0.33 -9.30 10.41 -15.06 -0.16 -9.46 16 16 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 17 C -0.01 -0.38 5.41 -17.43 -0.09 -0.47 16 18 N -0.91 -27.94 13.70 55.49 0.76 -27.18 16 19 Si 1.06 25.70 24.74 -169.99 -4.21 21.50 16 20 H -0.30 -6.70 6.74 56.52 0.38 -6.32 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.29 -6.74 6.87 56.52 0.39 -6.35 16 23 C 0.09 1.78 4.75 -3.07 -0.01 1.77 16 24 C 0.08 1.33 4.12 -24.89 -0.10 1.23 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 O -0.56 -7.89 12.67 -35.23 -0.45 -8.33 16 27 H 0.09 0.76 8.05 -52.49 -0.42 0.34 16 28 H 0.10 0.86 7.99 -52.49 -0.42 0.44 16 29 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 33 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 6.52 -51.93 -0.34 0.34 16 36 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 37 H 0.41 6.77 7.81 -40.82 -0.32 6.45 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16 41 H 0.04 0.77 3.62 -51.93 -0.19 0.58 16 42 H 0.04 0.92 8.01 -51.93 -0.42 0.50 16 43 H 0.38 3.80 9.11 45.56 0.42 4.21 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -32.66 344.35 -6.18 -38.84 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.28 Total: 8.80 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.48 Total: -1.52 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.04 Total: -53.97 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.36 Total: -18.84 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -4.21 Total: 21.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.66 -6.18 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.552 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds