Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00132 * 2 1 4 4 C 1.50705 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.46934 * 95.00306 * 4 2 1 6 6 H 1.09001 * 109.47118 * 55.00329 * 5 4 2 7 7 C 1.52998 * 109.47230 * 294.99936 * 5 4 2 8 8 C 1.50704 * 109.47032 * 174.99986 * 5 4 2 9 9 O 1.21278 * 120.00106 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00002 * 179.97438 * 8 5 4 11 11 C 1.46498 * 120.00040 * 179.97438 * 10 8 5 12 12 H 1.09007 * 110.88089 * 31.12891 * 11 10 8 13 13 C 1.55127 * 111.22780 * 267.21381 * 11 10 8 14 14 N 1.47418 * 104.72049 * 279.17514 * 13 11 10 15 15 C 1.36939 * 125.64946 * 155.81793 * 14 13 11 16 16 H 1.08004 * 119.99325 * 9.51727 * 15 14 13 17 17 C 1.38809 * 120.00199 * 189.51086 * 15 14 13 18 18 N 1.31623 * 119.99774 * 208.93706 * 17 15 14 19 19 Si 1.86800 * 119.99975 * 28.94163 * 17 15 14 20 20 H 1.48494 * 109.47052 * 275.29749 * 19 17 15 21 21 H 1.48497 * 109.47095 * 155.29577 * 19 17 15 22 22 H 1.48506 * 109.46908 * 35.29899 * 19 17 15 23 23 C 1.47018 * 108.70509 * 335.55383 * 14 13 11 24 24 C 1.54323 * 107.27391 * 1.28535 * 23 14 13 25 25 H 1.08992 * 110.72354 * 263.65910 * 24 23 14 26 26 O 1.42897 * 110.72146 * 140.55188 * 24 23 14 27 27 H 1.07995 * 119.99957 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00233 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47067 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46943 * 299.99484 * 3 2 1 31 31 H 1.08999 * 109.47170 * 59.99365 * 3 2 1 32 32 H 1.09002 * 109.46790 * 335.00524 * 4 2 1 33 33 H 1.08998 * 109.47395 * 215.00648 * 4 2 1 34 34 H 1.09001 * 109.47391 * 300.00226 * 7 5 4 35 35 H 1.09006 * 109.47077 * 60.00382 * 7 5 4 36 36 H 1.08997 * 109.47454 * 180.02562 * 7 5 4 37 37 H 0.97001 * 119.99840 * 0.02562 * 10 8 5 38 38 H 1.09002 * 110.49644 * 160.33195 * 13 11 10 39 39 H 1.09000 * 110.34346 * 37.94214 * 13 11 10 40 40 H 0.96999 * 120.00059 * 4.82165 * 18 17 15 41 41 H 1.09002 * 109.88762 * 120.70676 * 23 14 13 42 42 H 1.09000 * 109.88266 * 241.87111 * 23 14 13 43 43 H 0.96698 * 113.99483 * 61.46274 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9001 7 6 1.1488 -1.9557 -2.2316 8 6 3.2854 -2.9235 -1.4267 9 8 3.5766 -3.4513 -0.3744 10 7 3.7281 -3.4455 -2.5877 11 6 4.5626 -4.6496 -2.5784 12 1 4.3080 -5.2923 -1.7356 13 6 6.0709 -4.2875 -2.5627 14 7 6.3969 -3.9796 -3.9670 15 6 7.4292 -3.1860 -4.3912 16 1 8.1766 -2.8504 -3.6875 17 6 7.5149 -2.8130 -5.7255 18 7 8.6901 -2.5727 -6.2674 19 14 5.9625 -2.6521 -6.7519 20 1 5.5842 -3.9836 -7.2894 21 1 6.2083 -1.7154 -7.8777 22 1 4.8608 -2.1291 -5.9044 23 6 5.4341 -4.6707 -4.8370 24 6 4.4435 -5.4191 -3.9205 25 1 4.7419 -6.4603 -3.7988 26 8 3.1136 -5.3331 -4.4363 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1059 0.0005 30 1 1.8003 1.8766 -0.8901 31 1 1.8001 1.8767 0.8899 32 1 1.4385 -2.0853 0.4352 33 1 2.9742 -1.1987 0.5901 34 1 0.5991 -2.7747 -1.7677 35 1 0.5283 -1.0595 -2.2385 36 1 1.4081 -2.2264 -3.2551 37 1 3.4949 -3.0235 -3.4294 38 1 6.6628 -5.1332 -2.2124 39 1 6.2447 -3.4151 -1.9328 40 1 9.5001 -2.7235 -5.7557 41 1 4.8979 -3.9441 -5.4474 42 1 5.9567 -5.3817 -5.4769 43 1 3.0044 -5.7318 -5.3104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220190407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -74.535539 kcal Electronic energy + Delta-G solvation = -23277.462343 eV Core-core repulsion = 19936.563030 eV Total energy + Delta-G solvation = -3340.899313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33594 -39.76645 -37.65650 -36.77654 -35.37795 -34.18107 -33.40136 -30.46203 -29.34303 -28.12506 -27.92418 -26.00661 -24.48278 -22.62683 -21.70805 -21.02789 -19.65094 -19.30122 -18.40347 -18.10699 -17.38351 -16.80977 -16.44606 -16.05990 -15.73098 -15.56475 -15.30568 -15.03277 -14.73175 -14.34941 -14.19733 -14.04621 -13.88199 -13.55130 -13.32654 -13.07835 -13.04674 -12.88117 -12.56691 -12.54962 -12.21497 -11.96702 -11.90586 -11.80501 -11.74272 -11.42618 -10.99441 -10.75087 -10.59262 -10.12081 -9.85241 -9.15116 -8.71532 -5.44452 1.32814 1.37811 1.51248 1.62304 1.71121 2.20642 2.53303 2.86672 3.12141 3.32228 3.61590 3.63252 3.70832 3.88523 3.94718 4.11134 4.15561 4.24332 4.37358 4.46200 4.47653 4.65652 4.69653 4.78428 4.80217 4.82066 4.85746 4.91253 4.92199 4.95187 5.09988 5.14841 5.20944 5.27294 5.47789 5.55208 5.77434 6.01508 6.05989 6.54261 6.77066 6.81666 7.22372 7.40905 8.06548 8.79306 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.005006 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.119785 B = 5592.330205 C = 6023.671804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.100 4.100 6 H 0.100 0.900 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.695 5.695 11 C 0.143 3.857 12 H 0.108 0.892 13 C 0.121 3.879 14 N -0.619 5.619 15 C -0.326 4.326 16 H 0.040 0.960 17 C -0.067 4.067 18 N -0.947 5.947 19 Si 1.101 2.899 20 H -0.264 1.264 21 H -0.309 1.309 22 H -0.271 1.271 23 C 0.079 3.921 24 C 0.106 3.894 25 H 0.107 0.893 26 O -0.557 6.557 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 0.165 7.176 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.098 4.098 5 C -0.121 4.121 6 H 0.118 0.882 7 C -0.193 4.193 8 C 0.303 3.697 9 O -0.465 6.465 10 N -0.344 5.344 11 C 0.036 3.964 12 H 0.126 0.874 13 C -0.005 4.005 14 N -0.348 5.348 15 C -0.454 4.454 16 H 0.058 0.942 17 C -0.262 4.262 18 N -0.589 5.589 19 Si 0.928 3.072 20 H -0.190 1.190 21 H -0.238 1.238 22 H -0.198 1.198 23 C -0.045 4.045 24 C 0.046 3.954 25 H 0.125 0.875 26 O -0.365 6.365 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.243 0.757 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.188 0.550 6.984 21.369 hybrid contribution 1.790 -0.369 0.689 1.953 sum -18.398 0.181 7.673 19.935 Atomic orbital electron populations 1.23816 0.94765 1.02661 1.01135 1.21708 0.95797 0.95004 1.00734 1.20890 0.99657 0.94482 1.02845 1.20419 1.00022 0.95229 0.94164 1.21242 0.97398 0.94440 0.99058 0.88151 1.21785 0.95023 1.03235 0.99304 1.21180 0.79543 0.86025 0.82936 1.90636 1.60337 1.63484 1.32022 1.45605 1.51001 1.28486 1.09311 1.22135 0.89579 0.86794 0.97851 0.87450 1.22201 0.93635 0.98384 0.86293 1.44633 1.33511 1.55221 1.01396 1.19854 1.01329 1.29174 0.95074 0.94174 1.27060 1.04767 0.98463 0.95943 1.70999 0.97900 1.52698 1.37348 0.83368 0.72610 0.77242 0.73961 1.19021 1.23825 1.19755 1.22589 0.91903 0.95317 0.94730 1.22944 0.82337 0.98768 0.91367 0.87508 1.86435 1.26258 1.83849 1.39925 0.87065 0.88068 0.92899 0.90649 0.90648 0.91318 0.92352 0.92225 0.89607 0.91740 0.75693 0.93541 0.95116 0.94110 0.94700 0.94262 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 12.54 67.78 0.85 -2.06 16 2 C -0.13 -2.47 4.79 -16.49 -0.08 -2.55 16 3 C -0.12 -2.06 10.05 71.24 0.72 -1.35 16 4 C -0.06 -1.42 4.13 29.85 0.12 -1.30 16 5 C -0.10 -2.44 2.71 -11.54 -0.03 -2.47 16 6 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 7 C -0.14 -2.63 8.72 71.98 0.63 -2.00 16 8 C 0.52 16.40 7.15 87.66 0.63 17.03 16 9 O -0.58 -22.25 15.56 -3.02 -0.05 -22.30 16 10 N -0.69 -22.15 4.71 -435.59 -2.05 -24.20 16 11 C 0.14 4.70 3.31 46.46 0.15 4.86 16 12 H 0.11 3.42 7.54 -2.38 -0.02 3.40 16 13 C 0.12 4.91 6.95 86.93 0.60 5.52 16 14 N -0.62 -29.10 3.28 -691.57 -2.27 -31.37 16 15 C -0.33 -18.75 10.41 84.03 0.87 -17.87 16 16 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 17 C -0.07 -3.92 5.41 84.86 0.46 -3.46 16 18 N -0.95 -59.87 13.70 21.65 0.30 -59.57 16 19 Si 1.10 50.95 24.74 68.60 1.70 52.65 16 20 H -0.26 -10.80 6.74 99.48 0.67 -10.13 16 21 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 22 H -0.27 -11.42 6.87 99.48 0.68 -10.73 16 23 C 0.08 3.04 4.75 86.73 0.41 3.45 16 24 C 0.11 3.04 4.12 31.78 0.13 3.17 16 25 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 26 O -0.56 -13.11 12.67 -148.98 -1.89 -14.99 16 27 H 0.11 1.39 8.05 -2.91 -0.02 1.37 16 28 H 0.10 1.50 7.99 -2.91 -0.02 1.47 16 29 H 0.05 1.00 8.00 -2.39 -0.02 0.98 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.66 7.99 -2.39 -0.02 1.64 16 33 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.39 6.52 -2.38 -0.02 1.37 16 36 H 0.06 1.23 7.56 -2.39 -0.02 1.22 16 37 H 0.41 12.57 7.81 -92.71 -0.72 11.85 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 41 H 0.04 1.38 3.62 -2.39 -0.01 1.37 16 42 H 0.04 1.55 8.01 -2.39 -0.02 1.53 16 43 H 0.40 5.89 9.11 -74.06 -0.67 5.22 16 Total: -1.00 -72.52 344.35 0.72 -71.80 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.49 Total: 27.02 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.47 Total: 0.96 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -4.03 Total: -115.14 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.93 Total: -37.29 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.70 Total: 52.65 kcal Total: -72.52 0.72 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.734 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds