Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00288 * 2 1 4 4 C 1.50704 * 119.99375 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47179 * 94.99989 * 4 2 1 6 6 H 1.08995 * 109.47085 * 304.99580 * 5 4 2 7 7 C 1.53001 * 109.46933 * 64.99620 * 5 4 2 8 8 C 1.50702 * 109.46882 * 184.99668 * 5 4 2 9 9 O 1.21278 * 120.00063 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99697 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00149 * 179.97438 * 10 8 5 12 12 H 1.09005 * 110.88438 * 31.12428 * 11 10 8 13 13 C 1.54903 * 111.04020 * 267.21702 * 11 10 8 14 14 N 1.47428 * 104.83037 * 278.91676 * 13 11 10 15 15 C 1.36939 * 125.64484 * 156.13589 * 14 13 11 16 16 H 1.07993 * 120.00037 * 353.71565 * 15 14 13 17 17 C 1.38818 * 119.99487 * 173.71487 * 15 14 13 18 18 N 1.31614 * 120.00293 * 6.87900 * 17 15 14 19 19 Si 1.86798 * 119.99584 * 186.87919 * 17 15 14 20 20 H 1.48507 * 109.47032 * 94.98523 * 19 17 15 21 21 H 1.48499 * 109.47306 * 214.98527 * 19 17 15 22 22 H 1.48502 * 109.47533 * 334.99048 * 19 17 15 23 23 C 1.47021 * 108.70438 * 335.87218 * 14 13 11 24 24 C 1.54322 * 107.27114 * 1.05667 * 23 14 13 25 25 H 1.09001 * 110.72113 * 263.82996 * 24 23 14 26 26 O 1.42898 * 110.72206 * 140.55401 * 24 23 14 27 27 H 1.07996 * 119.99374 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00327 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47121 * 299.99653 * 3 2 1 31 31 H 1.08997 * 109.47235 * 60.00172 * 3 2 1 32 32 H 1.08997 * 109.47177 * 334.99594 * 4 2 1 33 33 H 1.09006 * 109.46883 * 214.99982 * 4 2 1 34 34 H 1.09003 * 109.47209 * 179.97438 * 7 5 4 35 35 H 1.08991 * 109.47479 * 299.99869 * 7 5 4 36 36 H 1.08998 * 109.47030 * 60.00535 * 7 5 4 37 37 H 0.97002 * 120.00390 * 359.97438 * 10 8 5 38 38 H 1.09005 * 110.36983 * 160.08170 * 13 11 10 39 39 H 1.08991 * 110.36757 * 37.75674 * 13 11 10 40 40 H 0.96993 * 119.99943 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.88419 * 120.47635 * 23 14 13 42 42 H 1.09004 * 109.88276 * 241.64445 * 23 14 13 43 43 H 0.96708 * 114.00082 * 61.45268 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 1 1.5244 -1.7026 -2.0481 7 6 3.4045 -0.6517 -2.0048 8 6 3.0714 -3.0458 -1.4509 9 8 3.2249 -3.6540 -0.4129 10 7 3.4780 -3.5877 -2.6159 11 6 4.1047 -4.9118 -2.6287 12 1 3.7098 -5.5364 -1.8274 13 6 5.6467 -4.7981 -2.5356 14 7 6.0868 -4.4984 -3.9103 15 6 7.2550 -3.8729 -4.2558 16 1 7.8957 -3.4637 -3.4889 17 6 7.6155 -3.7650 -5.5920 18 7 6.7753 -4.1407 -6.5328 19 14 9.2933 -3.0865 -6.0547 20 1 10.2433 -4.2101 -6.2557 21 1 9.1810 -2.3026 -7.3109 22 1 9.7895 -2.2077 -4.9654 23 6 5.0667 -4.9878 -4.8492 24 6 3.9257 -5.5986 -4.0085 25 1 4.0469 -6.6783 -3.9206 26 8 2.6532 -5.2756 -4.5727 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1352 1.1058 -0.0005 30 1 1.8003 1.8766 -0.8900 31 1 1.8003 1.8766 0.8900 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1993 0.5889 34 1 3.6641 -0.9214 -3.0285 35 1 2.9386 0.3336 -1.9953 36 1 4.3073 -0.6327 -1.3945 37 1 3.3556 -3.1011 -3.4461 38 1 6.0769 -5.7406 -2.1966 39 1 5.9274 -3.9883 -1.8623 40 1 7.0271 -4.0649 -7.4664 41 1 4.6848 -4.1598 -5.4464 42 1 5.4965 -5.7495 -5.4997 43 1 2.5219 -5.6166 -5.4681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220190408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -54.550213 kcal Electronic energy + Delta-G solvation = -23136.163330 eV Core-core repulsion = 19796.130645 eV Total energy + Delta-G solvation = -3340.032684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84507 -38.08384 -36.61753 -35.06923 -33.69285 -32.71708 -31.44502 -28.46932 -27.92222 -27.14608 -26.37158 -24.55585 -23.33296 -20.52509 -20.16029 -19.54812 -18.36696 -17.20034 -16.79747 -16.52459 -15.74744 -15.35449 -14.79490 -14.51019 -14.45503 -13.97825 -13.88468 -13.47117 -13.32178 -12.98373 -12.68498 -12.42851 -12.30907 -12.02817 -11.95808 -11.66334 -11.41686 -11.25987 -11.13548 -11.01704 -10.89327 -10.84610 -10.77252 -10.22263 -10.11627 -9.85033 -9.44766 -9.30528 -9.01007 -8.76115 -8.46853 -6.91371 -5.81401 -3.13644 2.12624 3.02794 3.35573 3.41774 3.42935 3.60313 4.40640 4.58230 4.75172 4.82685 4.96194 5.12939 5.19027 5.26093 5.41455 5.41760 5.45325 5.49494 5.58003 5.65884 5.73707 5.81999 5.83382 5.89012 5.90817 5.94478 6.12570 6.21203 6.27051 6.30884 6.47219 6.56119 6.59753 6.81267 7.04636 7.29464 7.42053 7.69007 8.00850 8.06682 8.14719 8.65773 9.12089 9.72458 10.37113 11.30889 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.004602 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.749690 B = 6082.520891 C = 6924.753398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.101 4.101 6 H 0.094 0.906 7 C -0.147 4.147 8 C 0.516 3.484 9 O -0.557 6.557 10 N -0.690 5.690 11 C 0.140 3.860 12 H 0.092 0.908 13 C 0.124 3.876 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.150 3.850 24 C 0.064 3.936 25 H 0.066 0.934 26 O -0.563 6.563 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.031 0.969 39 H 0.049 0.951 40 H 0.252 0.748 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 5.318 7.329 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.117 4.117 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.123 4.123 6 H 0.112 0.888 7 C -0.205 4.205 8 C 0.302 3.698 9 O -0.436 6.436 10 N -0.339 5.339 11 C 0.034 3.966 12 H 0.110 0.890 13 C -0.003 4.003 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.024 3.976 24 C 0.004 3.996 25 H 0.084 0.916 26 O -0.368 6.368 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.975 5.226 8.435 14.796 hybrid contribution 0.975 0.189 -1.408 1.723 sum -10.000 5.416 7.027 13.368 Atomic orbital electron populations 1.23644 0.95301 1.01688 1.03386 1.21790 0.95338 0.95787 0.98765 1.20971 1.00570 0.94657 1.01733 1.20515 1.00683 0.94048 0.95173 1.21235 0.99918 0.92781 0.98331 0.88788 1.21892 0.98682 0.98331 1.01550 1.20535 0.78152 0.87471 0.83602 1.90647 1.57291 1.63439 1.32179 1.45540 1.59892 1.19017 1.09460 1.22168 0.94229 0.83875 0.96372 0.89006 1.22000 0.90506 0.98636 0.89170 1.44308 1.20457 1.68792 0.99187 1.19071 0.95357 1.29252 0.91842 0.90332 1.24795 0.98406 1.01420 0.95582 1.69933 1.34214 1.53522 0.99293 0.86111 0.83775 0.78239 0.77737 1.21594 1.21763 1.20612 1.21866 0.86729 0.98052 0.90927 1.23556 0.84714 0.97613 0.93763 0.91600 1.86403 1.34921 1.80817 1.34649 0.88700 0.88512 0.91509 0.91541 0.91838 0.90595 0.90585 0.91706 0.91307 0.92033 0.75847 0.95116 0.93316 0.93729 0.92880 0.93237 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 13.93 29.01 0.40 -1.57 16 2 C -0.12 -1.22 4.94 -101.07 -0.50 -1.72 16 3 C -0.12 -1.09 8.39 36.00 0.30 -0.79 16 4 C -0.07 -0.83 4.14 -27.88 -0.12 -0.94 16 5 C -0.10 -1.33 2.71 -91.77 -0.25 -1.58 16 6 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 7 C -0.15 -1.83 8.26 37.16 0.31 -1.52 16 8 C 0.52 8.73 7.15 -10.99 -0.08 8.65 16 9 O -0.56 -11.01 15.56 5.56 0.09 -10.93 16 10 N -0.69 -12.03 4.70 -51.73 -0.24 -12.28 16 11 C 0.14 2.60 3.31 -65.78 -0.22 2.38 16 12 H 0.09 1.69 7.54 -51.93 -0.39 1.30 16 13 C 0.12 2.61 6.93 -2.53 -0.02 2.59 16 14 N -0.60 -14.68 3.39 -170.07 -0.58 -15.25 16 15 C -0.23 -6.15 10.26 -15.06 -0.15 -6.31 16 16 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 18 N -0.92 -25.89 10.36 55.49 0.58 -25.31 16 19 Si 0.91 21.62 29.56 -169.99 -5.02 16.59 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.15 3.37 5.14 -3.07 -0.02 3.35 16 24 C 0.06 1.14 4.12 -24.89 -0.10 1.04 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 O -0.56 -9.04 12.67 -35.23 -0.45 -9.49 16 27 H 0.09 0.79 8.05 -52.49 -0.42 0.37 16 28 H 0.10 0.93 7.99 -52.49 -0.42 0.51 16 29 H 0.07 0.61 7.27 -51.93 -0.38 0.23 16 30 H 0.07 0.54 7.99 -51.93 -0.41 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.01 7.80 -51.93 -0.41 0.60 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.86 7.56 -51.93 -0.39 0.47 16 35 H 0.07 0.72 5.79 -51.93 -0.30 0.42 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 7.02 7.80 -40.82 -0.32 6.70 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.05 1.32 7.47 -51.93 -0.39 0.93 16 42 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 43 H 0.38 4.67 9.11 45.56 0.42 5.08 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -30.86 347.20 -7.23 -38.09 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.30 Total: 10.01 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.53 Total: 3.34 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.25 Total: -52.84 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.36 Total: -20.42 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.86 -7.23 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.462 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds