Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00288 * 2 1 4 4 C 1.50704 * 119.99375 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47179 * 94.99989 * 4 2 1 6 6 H 1.08995 * 109.47085 * 304.99580 * 5 4 2 7 7 C 1.53001 * 109.46933 * 64.99620 * 5 4 2 8 8 C 1.50702 * 109.46882 * 184.99668 * 5 4 2 9 9 O 1.21278 * 120.00063 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99697 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00149 * 179.97438 * 10 8 5 12 12 H 1.09005 * 110.88438 * 31.12428 * 11 10 8 13 13 C 1.54903 * 111.04020 * 267.21702 * 11 10 8 14 14 N 1.47428 * 104.83037 * 278.91676 * 13 11 10 15 15 C 1.36939 * 125.64484 * 156.13589 * 14 13 11 16 16 H 1.07993 * 120.00037 * 353.71565 * 15 14 13 17 17 C 1.38818 * 119.99487 * 173.71487 * 15 14 13 18 18 N 1.31614 * 120.00293 * 6.87900 * 17 15 14 19 19 Si 1.86798 * 119.99584 * 186.87919 * 17 15 14 20 20 H 1.48507 * 109.47032 * 94.98523 * 19 17 15 21 21 H 1.48499 * 109.47306 * 214.98527 * 19 17 15 22 22 H 1.48502 * 109.47533 * 334.99048 * 19 17 15 23 23 C 1.47021 * 108.70438 * 335.87218 * 14 13 11 24 24 C 1.54322 * 107.27114 * 1.05667 * 23 14 13 25 25 H 1.09001 * 110.72113 * 263.82996 * 24 23 14 26 26 O 1.42898 * 110.72206 * 140.55401 * 24 23 14 27 27 H 1.07996 * 119.99374 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00327 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47121 * 299.99653 * 3 2 1 31 31 H 1.08997 * 109.47235 * 60.00172 * 3 2 1 32 32 H 1.08997 * 109.47177 * 334.99594 * 4 2 1 33 33 H 1.09006 * 109.46883 * 214.99982 * 4 2 1 34 34 H 1.09003 * 109.47209 * 179.97438 * 7 5 4 35 35 H 1.08991 * 109.47479 * 299.99869 * 7 5 4 36 36 H 1.08998 * 109.47030 * 60.00535 * 7 5 4 37 37 H 0.97002 * 120.00390 * 359.97438 * 10 8 5 38 38 H 1.09005 * 110.36983 * 160.08170 * 13 11 10 39 39 H 1.08991 * 110.36757 * 37.75674 * 13 11 10 40 40 H 0.96993 * 119.99943 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.88419 * 120.47635 * 23 14 13 42 42 H 1.09004 * 109.88276 * 241.64445 * 23 14 13 43 43 H 0.96708 * 114.00082 * 61.45268 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 1 1.5244 -1.7026 -2.0481 7 6 3.4045 -0.6517 -2.0048 8 6 3.0714 -3.0458 -1.4509 9 8 3.2249 -3.6540 -0.4129 10 7 3.4780 -3.5877 -2.6159 11 6 4.1047 -4.9118 -2.6287 12 1 3.7098 -5.5364 -1.8274 13 6 5.6467 -4.7981 -2.5356 14 7 6.0868 -4.4984 -3.9103 15 6 7.2550 -3.8729 -4.2558 16 1 7.8957 -3.4637 -3.4889 17 6 7.6155 -3.7650 -5.5920 18 7 6.7753 -4.1407 -6.5328 19 14 9.2933 -3.0865 -6.0547 20 1 10.2433 -4.2101 -6.2557 21 1 9.1810 -2.3026 -7.3109 22 1 9.7895 -2.2077 -4.9654 23 6 5.0667 -4.9878 -4.8492 24 6 3.9257 -5.5986 -4.0085 25 1 4.0469 -6.6783 -3.9206 26 8 2.6532 -5.2756 -4.5727 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1352 1.1058 -0.0005 30 1 1.8003 1.8766 -0.8900 31 1 1.8003 1.8766 0.8900 32 1 1.4385 -2.0857 0.4334 33 1 2.9742 -1.1993 0.5889 34 1 3.6641 -0.9214 -3.0285 35 1 2.9386 0.3336 -1.9953 36 1 4.3073 -0.6327 -1.3945 37 1 3.3556 -3.1011 -3.4461 38 1 6.0769 -5.7406 -2.1966 39 1 5.9274 -3.9883 -1.8623 40 1 7.0271 -4.0649 -7.4664 41 1 4.6848 -4.1598 -5.4464 42 1 5.4965 -5.7495 -5.4997 43 1 2.5219 -5.6166 -5.4681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220190408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -76.185309 kcal Electronic energy + Delta-G solvation = -23137.101498 eV Core-core repulsion = 19796.130645 eV Total energy + Delta-G solvation = -3340.970853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23885 -39.56299 -37.64282 -36.61960 -35.28082 -33.97604 -33.09369 -30.21208 -28.84466 -28.72156 -27.27054 -26.40103 -24.60451 -22.28692 -21.60278 -20.96261 -19.23294 -19.01325 -18.19694 -17.92408 -17.30533 -16.65880 -16.39355 -15.89706 -15.68664 -15.41577 -15.04290 -14.73241 -14.52007 -14.40859 -14.02470 -13.92715 -13.76027 -13.26742 -13.13481 -13.06464 -12.97561 -12.77358 -12.53021 -12.46389 -12.15601 -12.03224 -11.95430 -11.93173 -11.79424 -11.65256 -10.88849 -10.74572 -10.72610 -10.02036 -9.84692 -8.89876 -7.88634 -5.22489 1.34098 1.46309 1.47710 1.56083 1.67046 2.27297 2.47204 3.14572 3.33661 3.58225 3.67062 3.84280 3.89815 3.95986 3.98017 4.21549 4.24957 4.34569 4.43009 4.58040 4.63703 4.69689 4.78316 4.82565 4.83978 4.89432 4.93743 4.98378 5.12138 5.15904 5.21098 5.31538 5.41826 5.46825 5.57199 5.68754 5.78220 6.03135 6.15123 6.62156 6.86027 7.07626 7.28003 7.71988 8.36031 9.21555 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.004602 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.749690 B = 6082.520891 C = 6924.753398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.093 4.093 6 H 0.111 0.889 7 C -0.141 4.141 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.690 5.690 11 C 0.145 3.855 12 H 0.100 0.900 13 C 0.124 3.876 14 N -0.616 5.616 15 C -0.243 4.243 16 H 0.076 0.924 17 C -0.054 4.054 18 N -0.943 5.943 19 Si 0.973 3.027 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.272 1.272 23 C 0.162 3.838 24 C 0.086 3.914 25 H 0.087 0.913 26 O -0.561 6.561 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.408 0.592 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.248 0.752 41 H 0.026 0.974 42 H 0.020 0.980 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 6.200 7.618 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.129 4.129 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.114 4.114 6 H 0.129 0.871 7 C -0.198 4.198 8 C 0.301 3.699 9 O -0.468 6.468 10 N -0.339 5.339 11 C 0.038 3.962 12 H 0.117 0.883 13 C -0.002 4.002 14 N -0.343 5.343 15 C -0.372 4.372 16 H 0.094 0.906 17 C -0.248 4.248 18 N -0.592 5.592 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.197 1.197 23 C 0.037 3.963 24 C 0.026 3.974 25 H 0.105 0.895 26 O -0.368 6.368 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.243 0.757 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.004 6.108 8.728 16.050 hybrid contribution 1.255 -0.101 -1.470 1.936 sum -10.749 6.008 7.258 14.294 Atomic orbital electron populations 1.23812 0.95052 1.02523 1.01784 1.21747 0.95610 0.95299 1.00199 1.20980 1.00025 0.94031 1.02801 1.20429 1.00208 0.95067 0.94216 1.21248 1.00246 0.90499 0.99374 0.87117 1.21855 0.98215 0.99304 1.00452 1.21222 0.77468 0.88477 0.82770 1.90628 1.58513 1.64532 1.33104 1.45582 1.59741 1.18724 1.09825 1.22039 0.92404 0.84776 0.96931 0.88260 1.22076 0.92505 0.98326 0.87336 1.44506 1.20325 1.68594 1.00906 1.19346 0.96402 1.29383 0.92057 0.90631 1.25515 1.01474 1.02232 0.95563 1.70112 1.35452 1.54461 0.99150 0.85149 0.79864 0.77546 0.77294 1.21571 1.21910 1.19713 1.21645 0.87572 0.96275 0.90849 1.23233 0.83763 0.98178 0.92275 0.89495 1.86372 1.33232 1.81105 1.36139 0.86939 0.88634 0.92058 0.90432 0.90803 0.91735 0.91858 0.92727 0.88904 0.93201 0.75709 0.94297 0.94632 0.94225 0.95594 0.96165 0.75465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 13.93 67.78 0.94 -2.36 16 2 C -0.13 -2.43 4.94 -16.49 -0.08 -2.52 16 3 C -0.12 -1.90 8.39 71.23 0.60 -1.30 16 4 C -0.06 -1.47 4.14 29.85 0.12 -1.35 16 5 C -0.09 -2.34 2.71 -11.54 -0.03 -2.37 16 6 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 7 C -0.14 -3.36 8.26 71.98 0.59 -2.76 16 8 C 0.51 17.09 7.15 87.66 0.63 17.72 16 9 O -0.59 -23.14 15.56 -3.02 -0.05 -23.19 16 10 N -0.69 -23.67 4.70 -435.96 -2.05 -25.71 16 11 C 0.15 5.28 3.31 46.38 0.15 5.43 16 12 H 0.10 3.53 7.54 -2.38 -0.02 3.51 16 13 C 0.12 5.23 6.93 86.85 0.60 5.83 16 14 N -0.62 -30.46 3.39 -691.99 -2.35 -32.80 16 15 C -0.24 -13.31 10.26 84.03 0.86 -12.45 16 16 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 17 C -0.05 -2.96 5.48 84.86 0.47 -2.50 16 18 N -0.94 -53.72 10.36 21.65 0.22 -53.50 16 19 Si 0.97 44.63 29.56 68.60 2.03 46.65 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.16 7.36 5.14 86.73 0.45 7.81 16 24 C 0.09 2.99 4.12 31.78 0.13 3.12 16 25 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 26 O -0.56 -16.96 12.67 -148.98 -1.89 -18.85 16 27 H 0.11 1.52 8.05 -2.91 -0.02 1.50 16 28 H 0.10 1.63 7.99 -2.91 -0.02 1.61 16 29 H 0.06 1.02 7.27 -2.39 -0.02 1.00 16 30 H 0.08 1.04 7.99 -2.39 -0.02 1.02 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.68 7.80 -2.39 -0.02 1.66 16 33 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.41 7.56 -2.39 -0.02 1.39 16 35 H 0.09 1.76 5.79 -2.39 -0.01 1.75 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.41 13.86 7.80 -92.71 -0.72 13.13 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.03 1.31 7.47 -2.39 -0.02 1.29 16 42 H 0.02 1.03 7.36 -2.39 -0.02 1.01 16 43 H 0.40 8.99 9.11 -74.05 -0.67 8.31 16 Total: -1.00 -66.08 347.20 0.96 -65.12 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.39 Total: 30.00 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.43 Total: 12.29 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.17 Total: -112.02 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.93 Total: -42.04 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.08 0.96 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.070 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds