Wall clock time and date at job start Tue Mar 31 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47436 * 2 1 4 4 C 1.53002 * 109.46983 * 119.99974 * 2 1 3 5 5 C 1.50701 * 109.46957 * 294.99589 * 4 2 1 6 6 O 1.21279 * 119.99904 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00280 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00526 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.63339 * 36.68986 * 8 7 5 10 10 C 1.54314 * 110.71970 * 273.54968 * 8 7 5 11 11 N 1.47025 * 107.26969 * 219.44025 * 10 8 7 12 12 C 1.36939 * 125.64638 * 178.97819 * 11 10 8 13 13 H 1.07999 * 120.00593 * 349.94258 * 12 11 10 14 14 C 1.38818 * 119.99834 * 169.94433 * 12 11 10 15 15 N 1.31615 * 119.99637 * 350.41895 * 14 12 11 16 16 Si 1.86793 * 119.99918 * 170.41963 * 14 12 11 17 17 H 1.48499 * 109.47175 * 94.14164 * 16 14 12 18 18 H 1.48503 * 109.46997 * 214.14006 * 16 14 12 19 19 H 1.48496 * 109.47345 * 334.13963 * 16 14 12 20 20 C 1.47423 * 108.70233 * 358.94147 * 11 10 8 21 21 C 1.54905 * 104.83294 * 24.12604 * 20 11 10 22 22 H 1.08991 * 111.00515 * 204.91364 * 21 20 11 23 23 O 1.42903 * 110.99977 * 81.06280 * 21 20 11 24 24 C 1.53005 * 109.47088 * 239.99458 * 2 1 3 25 25 C 1.52995 * 117.49994 * 128.74902 * 24 2 1 26 26 C 1.52999 * 117.49596 * 60.08833 * 24 2 1 27 27 H 1.08999 * 109.47339 * 300.00337 * 1 2 3 28 28 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47243 * 60.00635 * 1 2 3 30 30 H 1.08997 * 109.47544 * 54.99888 * 4 2 1 31 31 H 1.09002 * 109.47129 * 174.99899 * 4 2 1 32 32 H 0.97005 * 119.99516 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.88607 * 338.85774 * 10 8 7 34 34 H 1.09010 * 109.88605 * 100.02542 * 10 8 7 35 35 H 0.97006 * 119.99824 * 180.02562 * 15 14 12 36 36 H 1.08994 * 110.36367 * 142.96972 * 20 11 10 37 37 H 1.09005 * 110.36135 * 265.17888 * 20 11 10 38 38 H 0.96703 * 113.99680 * 67.81051 * 23 21 20 39 39 H 1.09001 * 115.54863 * 274.41805 * 24 2 1 40 40 H 1.09000 * 117.49592 * 359.97438 * 25 24 2 41 41 H 1.08993 * 117.50148 * 145.01876 * 25 24 2 42 42 H 1.09005 * 117.49845 * 214.97790 * 26 24 2 43 43 H 1.08997 * 117.50193 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0110 1.0870 2.3632 7 7 1.9853 -0.3912 3.7001 8 6 1.5983 0.3658 4.8933 9 1 0.6102 0.8074 4.7642 10 6 2.6451 1.4535 5.2131 11 7 2.8020 1.4921 6.6744 12 6 3.6551 2.3117 7.3641 13 1 4.3989 2.8869 6.8328 14 6 3.5639 2.4032 8.7463 15 7 2.5462 1.8557 9.3762 16 14 4.8854 3.3033 9.7119 17 1 4.4679 4.7120 9.9276 18 1 5.0787 2.6378 11.0253 19 1 6.1601 3.2758 8.9507 20 6 1.8882 0.5028 7.2742 21 6 1.6395 -0.5377 6.1539 22 1 0.6880 -1.0488 6.2997 23 8 2.7156 -1.4749 6.0774 24 6 2.0400 -0.7214 -1.2492 25 6 3.0763 0.0037 -2.1101 26 6 1.6374 -0.1485 -2.6096 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 3.1263 -0.7995 1.2056 32 1 2.4898 -1.2148 3.7907 33 1 3.5965 1.2017 4.7446 34 1 2.2964 2.4212 4.8521 35 1 2.4822 1.9200 10.3420 36 1 2.3565 0.0277 8.1362 37 1 0.9523 0.9792 7.5664 38 1 2.7815 -2.0615 6.8434 39 1 2.1253 -1.8048 -1.1646 40 1 3.3944 0.9948 -1.7867 41 1 3.8431 -0.6026 -2.5921 42 1 1.4582 -0.8550 -3.4201 43 1 1.0089 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221107789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:18 Heat of formation + Delta-G solvation = -43.908175 kcal Electronic energy + Delta-G solvation = -22625.521739 eV Core-core repulsion = 19285.950528 eV Total energy + Delta-G solvation = -3339.571211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.89116 -38.36445 -37.51952 -34.76317 -33.93434 -33.16938 -31.66089 -28.87272 -27.85069 -26.66859 -24.52049 -23.59999 -22.44473 -20.80050 -20.41617 -19.78574 -19.64167 -17.41838 -16.73344 -16.64259 -15.95531 -15.23832 -15.12192 -14.87260 -14.63040 -14.13272 -13.66502 -13.54802 -13.14523 -12.95669 -12.82326 -12.56059 -12.23400 -11.84117 -11.75357 -11.39918 -11.34504 -11.20234 -10.98017 -10.84061 -10.80807 -10.58691 -10.45650 -10.39968 -10.12071 -10.05075 -9.83341 -9.50693 -9.24923 -8.67134 -8.59043 -6.80594 -5.77158 -3.08331 2.89525 3.38447 3.40640 3.45275 3.48152 3.64035 4.43707 4.51192 4.60648 4.66481 4.75562 4.87005 5.11068 5.20308 5.30670 5.35806 5.36561 5.44181 5.46559 5.51456 5.59058 5.72266 5.72766 5.78116 5.84746 5.92699 5.94156 6.03502 6.11140 6.26760 6.32106 6.40026 6.62474 6.74765 6.98296 7.28159 7.41391 7.71662 7.87647 8.07652 8.24074 8.54450 9.16801 9.78717 10.45033 11.36481 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.003360 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.218644 B = 8330.518929 C = 8704.527128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.508 3.492 6 O -0.543 6.543 7 N -0.710 5.710 8 C 0.144 3.856 9 H 0.099 0.901 10 C 0.132 3.868 11 N -0.596 5.596 12 C -0.223 4.223 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.923 5.923 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.149 3.851 21 C 0.066 3.934 22 H 0.060 0.940 23 O -0.561 6.561 24 C -0.148 4.148 25 C -0.182 4.182 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.406 0.594 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.253 0.747 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.378 0.622 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -10.075 -17.340 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.173 4.173 5 C 0.295 3.705 6 O -0.420 6.420 7 N -0.362 5.362 8 C 0.038 3.962 9 H 0.117 0.883 10 C 0.005 3.995 11 N -0.322 5.322 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.571 5.571 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.023 3.977 21 C 0.006 3.994 22 H 0.078 0.922 23 O -0.367 6.367 24 C -0.166 4.166 25 C -0.219 4.219 26 C -0.216 4.216 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.242 0.758 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.226 0.774 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.840 -8.965 -17.771 20.105 hybrid contribution 0.842 -0.185 1.201 1.478 sum -1.998 -9.149 -16.570 19.033 Atomic orbital electron populations 1.21922 0.94449 1.01342 1.02967 1.20453 0.96385 0.99033 0.90445 0.90302 1.21695 1.02951 1.00042 0.92660 1.20672 0.79335 0.85792 0.84741 1.90663 1.40241 1.24576 1.86563 1.45893 1.57256 1.27803 1.05216 1.22085 0.99380 0.92312 0.82392 0.88295 1.21600 0.95512 0.95418 0.86979 1.44272 1.46256 1.42513 0.99188 1.19040 1.08320 1.18540 0.89208 0.90606 1.24798 0.98168 1.00903 0.96643 1.69920 1.29460 1.49839 1.07854 0.86094 0.81173 0.79022 0.79444 1.21601 1.21629 1.20602 1.22058 0.94383 0.88286 0.92982 1.23590 0.88572 0.90366 0.96899 0.92237 1.86255 1.53181 1.50430 1.46826 1.22367 1.03514 0.99046 0.91648 1.23047 0.92396 1.02228 1.04262 1.22928 0.98176 1.03368 0.97167 0.90446 0.93443 0.93064 0.89132 0.88927 0.75811 0.95372 0.95419 0.93721 0.90517 0.94563 0.77450 0.87902 0.88715 0.89030 0.89072 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.77 37.16 0.33 -1.34 16 2 C -0.04 -0.48 2.19 -90.62 -0.20 -0.68 16 3 H 0.08 1.00 7.71 -51.93 -0.40 0.59 16 4 C -0.13 -1.42 5.16 -27.88 -0.14 -1.57 16 5 C 0.51 7.57 7.54 -10.99 -0.08 7.49 16 6 O -0.54 -9.98 13.69 5.56 0.08 -9.90 16 7 N -0.71 -10.83 5.09 -52.04 -0.26 -11.09 16 8 C 0.14 2.66 3.12 -66.10 -0.21 2.45 16 9 H 0.10 1.89 7.69 -51.93 -0.40 1.49 16 10 C 0.13 2.97 6.99 -3.07 -0.02 2.95 16 11 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 12 C -0.22 -6.33 10.24 -15.06 -0.15 -6.49 16 13 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 14 C -0.01 -0.26 5.40 -17.43 -0.09 -0.35 16 15 N -0.92 -26.81 10.68 55.49 0.59 -26.22 16 16 Si 0.91 22.22 29.56 -169.99 -5.03 17.19 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.15 3.47 5.16 -2.53 -0.01 3.46 16 21 C 0.07 1.18 4.28 -24.59 -0.11 1.07 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 O -0.56 -9.16 12.23 -35.23 -0.43 -9.59 16 24 C -0.15 -1.30 5.15 -90.62 -0.47 -1.76 16 25 C -0.18 -1.53 10.18 -26.70 -0.27 -1.80 16 26 C -0.18 -1.47 9.74 -26.69 -0.26 -1.73 16 27 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.41 5.51 7.57 -40.82 -0.31 5.21 16 33 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.08 1.95 6.93 -51.93 -0.36 1.59 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.38 4.84 9.12 45.56 0.42 5.26 16 39 H 0.10 0.81 8.11 -51.93 -0.42 0.38 16 40 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.80 7.61 -51.93 -0.40 0.40 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -32.38 345.18 -8.44 -40.81 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.32 Total: 7.95 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.69 Total: 1.71 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.25 Total: -53.38 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.35 Total: -19.49 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.38 -8.44 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221107789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds