Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00180 * 2 1 4 4 H 1.09004 * 109.46668 * 30.00006 * 3 2 1 5 5 C 1.52995 * 109.47075 * 270.00399 * 3 2 1 6 6 C 1.52993 * 109.47446 * 149.99738 * 3 2 1 7 7 C 1.50702 * 109.47309 * 295.00278 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.52788 * 87.32367 * 150.71243 * 10 9 7 12 12 H 1.09001 * 114.70638 * 142.41093 * 11 10 9 13 13 C 1.53061 * 111.38640 * 274.42608 * 11 10 9 14 14 C 1.53964 * 108.39823 * 144.15089 * 13 11 10 15 15 N 1.46536 * 107.57899 * 299.98694 * 14 13 11 16 16 C 1.36938 * 119.73427 * 237.77189 * 15 14 13 17 17 H 1.07994 * 120.00301 * 25.16694 * 16 15 14 18 18 C 1.38818 * 119.99816 * 205.17074 * 16 15 14 19 19 N 1.31613 * 120.00275 * 15.81469 * 18 16 15 20 20 Si 1.86799 * 119.99758 * 196.09272 * 18 16 15 21 21 H 1.48502 * 109.47209 * 269.72348 * 20 18 16 22 22 H 1.48499 * 109.47290 * 29.72240 * 20 18 16 23 23 H 1.48496 * 109.46979 * 149.72232 * 20 18 16 24 24 C 1.45697 * 120.53179 * 57.48733 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.08997 * 109.46917 * 299.99832 * 1 2 3 28 28 H 1.08995 * 109.46997 * 59.99905 * 1 2 3 29 29 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47052 * 299.99372 * 5 3 2 31 31 H 1.08996 * 109.47696 * 59.99619 * 5 3 2 32 32 H 1.09000 * 109.47409 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47486 * 175.00162 * 6 3 2 34 34 H 1.09007 * 109.46952 * 55.00056 * 6 3 2 35 35 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 36 36 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 37 37 H 1.08997 * 109.51844 * 262.81926 * 13 11 10 38 38 H 1.08993 * 109.51835 * 22.92974 * 13 11 10 39 39 H 1.08995 * 108.93631 * 181.12678 * 14 13 11 40 40 H 1.09005 * 111.13975 * 60.09590 * 14 13 11 41 41 H 0.96996 * 120.00502 * 180.02562 * 19 18 16 42 42 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 43 43 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2633 0.7213 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7344 2.5904 9 7 4.1953 0.8302 3.0085 10 6 5.6570 0.9795 2.9065 11 6 5.6420 1.4220 4.3688 12 1 6.4876 1.0702 4.9599 13 6 5.3607 2.9212 4.4955 14 6 4.5047 3.1503 5.7546 15 7 3.2591 2.3970 5.5861 16 6 2.0573 3.0511 5.6400 17 1 2.0034 4.1026 5.3999 18 6 0.9080 2.3624 6.0035 19 7 1.0023 1.1878 6.5897 20 14 -0.7724 3.0994 5.6536 21 1 -1.2038 3.9208 6.8131 22 1 -0.6952 3.9551 4.4424 23 1 -1.7539 2.0084 5.4272 24 6 3.2894 0.9587 5.3554 25 6 4.4040 0.5350 4.4279 26 1 4.6689 -0.5110 4.5825 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.8830 1.0775 -1.9563 31 1 1.2569 1.8015 -1.9563 32 1 2.6606 2.7673 -1.4425 33 1 3.8427 2.2370 0.6444 34 1 3.9932 0.5051 0.2617 35 1 6.1791 0.0395 2.7284 36 1 5.9670 1.7712 2.2244 37 1 6.3016 3.4602 4.6058 38 1 4.8430 3.2713 3.6026 39 1 4.2822 4.2136 5.8424 40 1 5.0231 2.8075 6.6501 41 1 0.1993 0.7065 6.8433 42 1 3.4170 0.4523 6.3122 43 1 2.3377 0.6527 4.9210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221430969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -13.011548 kcal Electronic energy + Delta-G solvation = -24147.050782 eV Core-core repulsion = 20808.819350 eV Total energy + Delta-G solvation = -3338.231433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51131 -38.53157 -36.92853 -35.14053 -32.64926 -32.02957 -30.09578 -29.39796 -27.38435 -26.77585 -26.20554 -23.77964 -22.92021 -21.36517 -20.91316 -19.58812 -17.69825 -16.92766 -16.62836 -15.84020 -15.65431 -15.51182 -14.86793 -14.41517 -14.17954 -13.83032 -13.54022 -13.19359 -13.10114 -12.81948 -12.68731 -12.51171 -12.23638 -11.90768 -11.81565 -11.69171 -11.35464 -11.24482 -11.02350 -10.62606 -10.60955 -10.56360 -10.43564 -10.16919 -9.82721 -9.73922 -9.48354 -9.38851 -8.78815 -8.24561 -7.98263 -6.53869 -5.61637 -3.02615 3.37193 3.40895 3.48270 3.55704 3.57811 3.99715 4.63929 4.76616 4.78468 4.92509 5.22088 5.30412 5.34858 5.48445 5.49275 5.53497 5.58292 5.62491 5.63867 5.67298 5.70280 5.79434 5.81306 5.95203 5.99782 6.01026 6.15302 6.20399 6.24245 6.39186 6.43771 6.58066 6.64982 6.82637 7.04344 7.43129 7.56033 7.81968 7.98829 8.47947 8.61971 8.94461 9.40068 10.05046 10.52749 11.46700 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.008226 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.030305 B = 3402.826853 C = 4913.103400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.172 4.172 6 C -0.131 4.131 7 C 0.540 3.460 8 O -0.509 6.509 9 N -0.637 5.637 10 C 0.096 3.904 11 C -0.115 4.115 12 H 0.088 0.912 13 C -0.112 4.112 14 C 0.147 3.853 15 N -0.585 5.585 16 C -0.252 4.252 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.290 1.290 24 C 0.169 3.831 25 C 0.119 3.881 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.023 0.977 41 H 0.251 0.749 42 H 0.028 0.972 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -0.231 -12.627 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.089 0.911 5 C -0.230 4.230 6 C -0.171 4.171 7 C 0.329 3.671 8 O -0.383 6.383 9 N -0.374 5.374 10 C -0.028 4.028 11 C -0.134 4.134 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.020 3.980 15 N -0.307 5.307 16 C -0.382 4.382 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.218 1.218 22 H -0.208 1.208 23 H -0.216 1.216 24 C 0.042 3.958 25 C 0.015 3.985 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.356 -0.609 -12.507 15.054 hybrid contribution -0.947 0.390 -0.339 1.079 sum 7.409 -0.218 -12.846 14.831 Atomic orbital electron populations 1.22682 0.81166 1.02235 0.99783 1.87853 1.19720 1.27070 1.94941 1.21785 0.93967 0.85932 0.94253 0.91149 1.22286 1.02290 1.01444 0.96947 1.21740 0.98415 1.03570 0.93342 1.19784 0.83483 0.77545 0.86293 1.90764 1.22113 1.48646 1.76765 1.49581 1.05617 1.70824 1.11424 1.23062 0.81840 0.99979 0.97924 1.22561 0.98030 0.97427 0.95374 0.89373 1.21973 0.99306 0.92591 1.01298 1.20903 0.88069 0.95954 0.93033 1.43454 1.00922 1.03597 1.82729 1.19050 0.84916 0.94344 1.39873 0.92156 1.24901 0.98166 0.97317 0.98309 1.70011 1.27370 1.14968 1.42298 0.86333 0.84785 0.77992 0.77806 1.21768 1.20771 1.21640 1.20142 0.96876 0.84507 0.94241 1.22634 0.96309 0.97353 0.82230 0.91217 0.93218 0.94961 0.90224 0.91937 0.92365 0.91622 0.88497 0.89027 0.90660 0.91349 0.92951 0.91996 0.92865 0.95868 0.93862 0.95429 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.82 101.05 1.09 1.66 16 2 O -0.38 -6.41 9.58 -49.63 -0.48 -6.88 16 3 C 0.10 1.50 2.27 -26.74 -0.06 1.44 16 4 H 0.07 1.20 7.60 -51.93 -0.39 0.80 16 5 C -0.17 -1.91 9.53 37.15 0.35 -1.56 16 6 C -0.13 -1.94 5.27 -27.89 -0.15 -2.08 16 7 C 0.54 10.86 7.89 -10.98 -0.09 10.78 16 8 O -0.51 -12.82 14.66 -8.84 -0.13 -12.95 16 9 N -0.64 -11.76 3.27 -191.22 -0.63 -12.38 16 10 C 0.10 1.28 7.76 -12.20 -0.09 1.19 16 11 C -0.11 -1.77 4.47 -91.01 -0.41 -2.17 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.87 5.72 -26.20 -0.15 -2.02 16 14 C 0.15 3.06 6.49 -3.52 -0.02 3.04 16 15 N -0.58 -15.10 3.00 -174.42 -0.52 -15.63 16 16 C -0.25 -7.29 9.52 -15.06 -0.14 -7.44 16 17 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 18 C 0.01 0.35 4.91 -17.43 -0.09 0.26 16 19 N -0.90 -27.78 11.04 55.49 0.61 -27.17 16 20 Si 0.90 23.59 29.58 -169.99 -5.03 18.57 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 24 C 0.17 4.27 4.60 -5.45 -0.03 4.24 16 25 C 0.12 2.33 4.09 -77.70 -0.32 2.01 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.03 0.39 7.87 -51.93 -0.41 -0.01 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.12 7.64 -51.93 -0.40 0.73 16 39 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.03 0.76 7.99 -51.93 -0.42 0.34 16 43 H 0.10 3.02 5.01 -51.93 -0.26 2.76 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -34.99 341.31 -8.42 -43.41 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.30 Total: -1.46 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.09 Total: 9.34 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.54 Total: -55.18 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.61 Total: -19.83 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.03 Total: 18.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.99 -8.42 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221430969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.402 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds