Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00411 * 2 1 4 4 H 1.09004 * 109.46578 * 329.99642 * 3 2 1 5 5 C 1.52995 * 109.47333 * 89.99505 * 3 2 1 6 6 C 1.52993 * 109.47001 * 209.99849 * 3 2 1 7 7 C 1.50702 * 109.47309 * 64.99847 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.54078 * 87.60926 * 151.38172 * 10 9 7 12 12 H 1.09002 * 115.04528 * 141.62729 * 11 10 9 13 13 C 1.53066 * 111.39242 * 273.97325 * 11 10 9 14 14 C 1.52707 * 109.28308 * 142.28636 * 13 11 10 15 15 N 1.46536 * 108.49040 * 301.79793 * 14 13 11 16 16 C 1.36938 * 119.73427 * 236.40244 * 15 14 13 17 17 H 1.08005 * 120.00095 * 25.18381 * 16 15 14 18 18 C 1.38818 * 119.99870 * 205.18653 * 16 15 14 19 19 N 1.31617 * 119.99988 * 15.77908 * 18 16 15 20 20 Si 1.86796 * 119.99924 * 196.05268 * 18 16 15 21 21 H 1.48498 * 109.47398 * 179.72445 * 20 18 16 22 22 H 1.48503 * 109.47518 * 299.72628 * 20 18 16 23 23 H 1.48507 * 109.47031 * 59.72396 * 20 18 16 24 24 C 1.45697 * 120.53179 * 56.11788 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47167 * 300.00660 * 1 2 3 29 29 H 1.09000 * 109.46775 * 60.00513 * 1 2 3 30 30 H 1.08994 * 109.47193 * 180.02562 * 5 3 2 31 31 H 1.09007 * 109.47126 * 300.00624 * 5 3 2 32 32 H 1.09001 * 109.47095 * 59.99747 * 5 3 2 33 33 H 1.08997 * 109.47486 * 304.99731 * 6 3 2 34 34 H 1.09007 * 109.46952 * 184.99625 * 6 3 2 35 35 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 36 36 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 37 37 H 1.09000 * 109.51261 * 262.32261 * 13 11 10 38 38 H 1.08999 * 109.51616 * 22.43242 * 13 11 10 39 39 H 1.08995 * 109.62537 * 182.01269 * 14 13 11 40 40 H 1.09005 * 109.55654 * 61.53493 * 14 13 11 41 41 H 0.97003 * 119.99981 * 180.02562 * 19 18 16 42 42 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 43 43 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2631 -0.7212 7 6 3.1417 0.9234 -2.1733 8 8 2.0188 0.7333 -2.5902 9 7 4.1953 0.8308 -3.0086 10 6 5.6570 0.9803 -2.9066 11 6 5.7761 -0.0235 -4.0694 12 1 6.5640 0.1963 -4.7899 13 6 5.7657 -1.4680 -3.5632 14 6 4.9815 -2.3396 -4.5416 15 7 3.6238 -1.8010 -4.6585 16 6 2.5486 -2.6055 -4.3903 17 1 2.6596 -3.4531 -3.7302 18 6 1.3158 -2.3315 -4.9668 19 7 1.2370 -1.5116 -5.9933 20 14 -0.2321 -3.1206 -4.2807 21 1 -1.4089 -2.6640 -5.0629 22 1 -0.1181 -4.5982 -4.3750 23 1 -0.3999 -2.7269 -2.8587 24 6 3.4088 -0.4147 -5.0519 25 6 4.4041 0.5350 -4.4279 26 1 4.4989 1.4482 -5.0154 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.6607 2.7673 1.4424 31 1 1.2568 1.8015 1.9563 32 1 2.8828 1.0774 1.9564 33 1 3.9931 0.5050 -0.2617 34 1 3.8428 2.2369 -0.6443 35 1 6.0106 1.9804 -3.1572 36 1 6.0679 0.6094 -1.9676 37 1 6.7894 -1.8346 -3.4872 38 1 5.2913 -1.5069 -2.5826 39 1 4.9402 -3.3628 -4.1684 40 1 5.4688 -2.3228 -5.5166 41 1 0.3756 -1.3198 -6.3959 42 1 3.4861 -0.3416 -6.1367 43 1 2.4046 -0.1161 -4.7511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221430970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -13.145051 kcal Electronic energy + Delta-G solvation = -24289.461611 eV Core-core repulsion = 20951.224389 eV Total energy + Delta-G solvation = -3338.237222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43853 -38.48693 -36.89887 -35.11232 -32.62163 -32.04853 -30.06063 -29.40706 -27.37967 -26.75286 -26.12595 -23.75033 -22.88332 -21.34732 -20.92088 -19.55101 -17.66603 -16.86203 -16.65016 -15.82332 -15.61078 -15.48749 -14.77952 -14.42942 -14.09191 -13.76310 -13.54384 -13.21282 -13.12288 -12.71771 -12.70061 -12.49293 -12.22751 -11.87349 -11.83890 -11.67438 -11.33720 -11.18248 -11.00364 -10.56476 -10.56044 -10.52137 -10.40266 -10.11976 -9.79859 -9.69124 -9.46373 -9.30658 -8.78827 -8.20227 -7.98240 -6.50243 -5.57395 -2.97930 3.37542 3.39873 3.53249 3.58276 3.64225 4.07424 4.68454 4.75694 4.77479 4.92853 5.23382 5.27228 5.35651 5.50171 5.52634 5.55812 5.57440 5.62560 5.66746 5.70304 5.73792 5.80845 5.83531 5.96534 6.00668 6.12153 6.17739 6.20411 6.28083 6.42641 6.46950 6.60302 6.67392 6.86262 7.07672 7.53339 7.58049 7.85091 8.02376 8.48227 8.66153 8.94295 9.44420 10.09182 10.56529 11.51144 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.009108 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.189252 B = 3073.472438 C = 4723.619020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.370 6.370 3 C 0.100 3.900 4 H 0.066 0.934 5 C -0.173 4.173 6 C -0.132 4.132 7 C 0.541 3.459 8 O -0.509 6.509 9 N -0.637 5.637 10 C 0.095 3.905 11 C -0.115 4.115 12 H 0.089 0.911 13 C -0.114 4.114 14 C 0.149 3.851 15 N -0.583 5.583 16 C -0.249 4.249 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.905 5.905 20 Si 0.900 3.100 21 H -0.293 1.293 22 H -0.287 1.287 23 H -0.282 1.282 24 C 0.169 3.831 25 C 0.118 3.882 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.251 0.749 42 H 0.028 0.972 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 8.433 10.767 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.288 6.288 3 C 0.041 3.959 4 H 0.084 0.916 5 C -0.230 4.230 6 C -0.172 4.172 7 C 0.330 3.670 8 O -0.382 6.382 9 N -0.374 5.374 10 C -0.028 4.028 11 C -0.134 4.134 12 H 0.108 0.892 13 C -0.154 4.154 14 C 0.022 3.978 15 N -0.305 5.305 16 C -0.378 4.378 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.550 5.550 20 Si 0.730 3.270 21 H -0.219 1.219 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.043 3.957 25 C 0.014 3.986 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.564 8.234 10.598 15.406 hybrid contribution -0.903 0.064 0.422 0.999 sum 6.661 8.298 11.021 15.319 Atomic orbital electron populations 1.22665 0.81207 1.02521 0.99223 1.87945 1.19626 1.26421 1.94808 1.21748 0.93788 0.86231 0.94105 0.91638 1.22295 1.02328 1.01282 0.97112 1.21749 0.98617 1.03314 0.93492 1.19779 0.83336 0.77310 0.86624 1.90765 1.22154 1.48119 1.77196 1.49484 1.05959 1.70356 1.11602 1.23271 0.81321 0.98818 0.99420 1.22766 0.97640 0.95760 0.97224 0.89249 1.21752 0.99277 0.93609 1.00752 1.20626 0.86690 0.95348 0.95146 1.43417 1.00197 1.06476 1.80413 1.19020 0.88273 1.09097 1.21409 0.92195 1.24874 0.98426 0.99403 0.95937 1.70014 1.23654 1.39412 1.21891 0.86404 0.83252 0.78334 0.78985 1.21881 1.21326 1.20851 1.20142 0.98045 0.82281 0.95280 1.22594 0.95210 0.98108 0.82665 0.91364 0.90082 0.95156 0.93494 0.91813 0.92372 0.91815 0.88774 0.88743 0.90764 0.91251 0.92772 0.92068 0.92688 0.96419 0.93921 0.95459 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.82 101.05 1.09 1.76 16 2 O -0.37 -6.90 9.58 -49.66 -0.48 -7.37 16 3 C 0.10 1.51 2.27 -26.74 -0.06 1.45 16 4 H 0.07 1.03 7.60 -51.93 -0.39 0.63 16 5 C -0.17 -1.90 9.53 37.15 0.35 -1.55 16 6 C -0.13 -1.95 5.27 -27.89 -0.15 -2.10 16 7 C 0.54 10.88 7.89 -10.98 -0.09 10.79 16 8 O -0.51 -12.82 14.66 -8.87 -0.13 -12.95 16 9 N -0.64 -11.76 3.33 -187.71 -0.63 -12.39 16 10 C 0.10 1.28 7.77 -11.53 -0.09 1.19 16 11 C -0.11 -1.79 4.57 -90.32 -0.41 -2.20 16 12 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.96 5.68 -26.85 -0.15 -2.12 16 14 C 0.15 3.17 6.43 -4.17 -0.03 3.15 16 15 N -0.58 -15.34 3.03 -175.19 -0.53 -15.87 16 16 C -0.25 -7.33 9.52 -15.06 -0.14 -7.48 16 17 H 0.06 1.76 7.84 -52.48 -0.41 1.35 16 18 C 0.01 0.36 4.91 -17.43 -0.09 0.27 16 19 N -0.90 -28.11 11.04 55.49 0.61 -27.49 16 20 Si 0.90 23.96 29.58 -169.99 -5.03 18.93 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 24 C 0.17 4.31 4.59 -5.45 -0.03 4.29 16 25 C 0.12 2.32 4.03 -77.70 -0.31 2.01 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.03 0.39 7.87 -51.93 -0.41 -0.01 16 29 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 39 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.03 0.75 7.99 -51.93 -0.42 0.34 16 43 H 0.10 3.03 5.01 -51.93 -0.26 2.76 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -35.68 341.43 -8.44 -44.12 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.31 Total: -1.59 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.10 Total: 9.46 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.54 Total: -55.75 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.61 Total: -20.32 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.03 Total: 18.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.68 -8.44 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221430970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.971 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds