Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46542 * 2 1 4 4 C 1.42909 * 113.99466 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47098 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99701 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00074 * 179.97438 * 6 5 4 9 9 C 1.46628 * 134.55046 * 359.59298 * 8 6 5 10 10 C 1.54644 * 85.48350 * 153.44762 * 9 8 6 11 11 H 1.09000 * 114.44258 * 140.46642 * 10 9 8 12 12 C 1.53015 * 110.83758 * 270.84774 * 10 9 8 13 13 C 1.53908 * 108.69523 * 145.03949 * 12 10 9 14 14 N 1.46612 * 107.38615 * 299.55835 * 13 12 10 15 15 C 1.36940 * 119.88864 * 238.54646 * 14 13 12 16 16 H 1.08003 * 119.99903 * 149.97207 * 15 14 13 17 17 C 1.38813 * 120.00113 * 329.96728 * 15 14 13 18 18 N 1.31612 * 120.00160 * 145.72156 * 17 15 14 19 19 Si 1.86800 * 119.99742 * 325.72026 * 17 15 14 20 20 H 1.48496 * 109.47287 * 269.99874 * 19 17 15 21 21 H 1.48503 * 109.47192 * 150.00104 * 19 17 15 22 22 H 1.48501 * 109.47398 * 30.00430 * 19 17 15 23 23 C 1.45679 * 120.22265 * 58.27533 * 14 13 12 24 24 C 1.46816 * 135.01230 * 180.02562 * 8 6 5 25 25 H 1.08996 * 111.56606 * 95.14759 * 24 8 6 26 26 H 1.08998 * 109.47215 * 60.00183 * 1 2 3 27 27 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47262 * 299.99638 * 1 2 3 29 29 H 1.09004 * 109.46649 * 240.00275 * 2 1 3 30 30 H 1.08998 * 109.47215 * 119.99817 * 2 1 3 31 31 H 1.08997 * 109.47349 * 59.99811 * 4 3 2 32 32 H 1.09000 * 109.46563 * 299.99839 * 4 3 2 33 33 H 1.08998 * 109.47010 * 59.99371 * 5 4 3 34 34 H 1.09000 * 109.46813 * 299.99579 * 5 4 3 35 35 H 1.08999 * 113.38130 * 39.41057 * 9 8 6 36 36 H 1.08996 * 114.61890 * 267.62174 * 9 8 6 37 37 H 1.08999 * 109.47503 * 263.88579 * 12 10 9 38 38 H 1.09000 * 109.47361 * 23.89851 * 12 10 9 39 39 H 1.08999 * 109.03976 * 180.69038 * 13 12 10 40 40 H 1.08999 * 111.06926 * 59.57030 * 13 12 10 41 41 H 0.96997 * 120.00090 * 354.75521 * 18 17 15 42 42 H 1.09005 * 108.71597 * 82.01642 * 23 14 13 43 43 H 1.08991 * 108.72090 * 200.04163 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3276 3.0575 0.0001 7 8 6.0150 2.0583 0.0001 8 7 5.9071 4.2743 0.0002 9 6 5.4061 5.6523 -0.0072 10 6 6.7393 6.0111 0.6894 11 1 7.1869 6.9461 0.3524 12 6 6.6055 5.9026 2.2098 13 6 7.9389 5.3956 2.7875 14 7 8.1982 4.0778 2.1996 15 6 8.3488 2.9857 3.0120 16 1 8.0617 2.0063 2.6589 17 6 8.8705 3.1376 4.2894 18 7 8.4410 2.3732 5.2709 19 14 10.1823 4.4270 4.6152 20 1 11.5259 3.8300 4.4063 21 1 10.0667 4.9080 6.0154 22 1 9.9973 5.5681 3.6830 23 6 8.2904 3.9251 0.7538 24 6 7.2907 4.7654 -0.0003 25 1 7.6375 4.9853 -1.0099 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.8333 0.9768 -0.8908 32 1 3.8339 0.9765 0.8892 33 1 3.4228 3.4215 0.8905 34 1 3.4222 3.4224 -0.8894 35 1 4.5278 5.7966 0.6219 36 1 5.2960 6.0901 -0.9993 37 1 6.3912 6.8865 2.6270 38 1 5.7927 5.2190 2.4552 39 1 7.8458 5.3044 3.8697 40 1 8.7554 6.0751 2.5433 41 1 7.7075 1.7567 5.1201 42 1 9.2943 4.2066 0.4356 43 1 8.1273 2.8774 0.5015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221432762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -20.823268 kcal Electronic energy + Delta-G solvation = -23251.942269 eV Core-core repulsion = 19913.372095 eV Total energy + Delta-G solvation = -3338.570174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71684 -38.47815 -37.54149 -35.46354 -32.55651 -31.94829 -31.05490 -30.51911 -28.77255 -27.03489 -24.13979 -23.37124 -22.91415 -22.66646 -21.06166 -19.84958 -17.92728 -17.41104 -16.79750 -16.50078 -16.00684 -15.65700 -15.53595 -14.75663 -14.45362 -14.36714 -13.74468 -13.62306 -13.27101 -13.15824 -12.91129 -12.61590 -12.44470 -12.14815 -11.94143 -11.83434 -11.71370 -11.29756 -11.14260 -11.11948 -11.09432 -10.84681 -10.49764 -10.15801 -9.84416 -9.64674 -9.54947 -9.20887 -9.11339 -8.39365 -8.18200 -6.87299 -6.26946 -3.16802 2.92757 2.98490 3.54450 3.61634 3.69146 3.75282 4.55448 4.69899 4.72109 4.89443 4.92551 5.00027 5.04374 5.11024 5.14604 5.25388 5.28723 5.42587 5.43860 5.48374 5.54999 5.58727 5.71841 5.73508 5.79071 5.86759 5.87757 5.94058 5.97843 6.04960 6.26886 6.36263 6.44208 6.67788 6.79970 6.87580 7.04062 7.11990 8.05936 8.26151 8.50685 8.57546 9.15809 9.75709 10.32022 11.13739 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.004780 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.626700 B = 5856.504904 C = 6746.362186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.395 6.395 4 C 0.079 3.921 5 C -0.131 4.131 6 C 0.541 3.459 7 O -0.533 6.533 8 N -0.628 5.628 9 C 0.094 3.906 10 C -0.108 4.108 11 H 0.088 0.912 12 C -0.119 4.119 13 C 0.143 3.857 14 N -0.591 5.591 15 C -0.352 4.352 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 1.020 2.980 20 H -0.299 1.299 21 H -0.295 1.295 22 H -0.270 1.270 23 C 0.141 3.859 24 C 0.130 3.870 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.020 0.980 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 5.862 -12.729 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.315 6.315 4 C 0.002 3.998 5 C -0.171 4.171 6 C 0.330 3.670 7 O -0.409 6.409 8 N -0.364 5.364 9 C -0.030 4.030 10 C -0.127 4.127 11 H 0.106 0.894 12 C -0.159 4.159 13 C 0.017 3.983 14 N -0.315 5.315 15 C -0.480 4.480 16 H 0.080 0.920 17 C -0.202 4.202 18 N -0.541 5.541 19 Si 0.849 3.151 20 H -0.227 1.227 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.014 3.986 24 C 0.027 3.973 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.979 5.819 -11.567 16.976 hybrid contribution -0.884 -0.816 -1.294 1.767 sum -11.862 5.003 -12.861 18.198 Atomic orbital electron populations 1.21742 0.93831 1.02145 1.03011 1.22440 0.95339 0.83753 1.00351 1.87781 1.21432 1.26639 1.95614 1.22111 0.80242 0.95554 1.01852 1.21371 0.92982 0.97777 1.04922 1.19843 0.89340 0.81761 0.76046 1.90721 1.65146 1.35389 1.49661 1.49543 1.09425 1.04223 1.73209 1.23373 0.98630 0.80957 1.00010 1.22950 0.95066 0.97410 0.97287 0.89352 1.22081 1.01380 1.00237 0.92170 1.21472 0.92359 0.87096 0.97359 1.43795 1.82782 1.05023 0.99891 1.20100 1.42336 0.88498 0.97084 0.91988 1.26133 1.00766 1.01850 0.91477 1.70864 1.27012 1.25141 1.31106 0.84586 0.78096 0.77108 0.75288 1.22724 1.22195 1.19645 1.20219 0.93609 0.99392 0.85349 1.22431 0.84212 0.92189 0.98499 0.90372 0.91988 0.91165 0.91836 0.93426 0.93182 0.92597 0.92111 0.88467 0.88809 0.90374 0.90192 0.92528 0.91650 0.91541 0.94643 0.92467 0.96193 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.64 6.66 37.16 0.25 0.88 16 3 O -0.39 -5.41 10.34 -35.23 -0.36 -5.78 16 4 C 0.08 1.16 5.23 37.16 0.19 1.35 16 5 C -0.13 -1.84 5.81 -27.88 -0.16 -2.01 16 6 C 0.54 9.76 7.99 -10.99 -0.09 9.67 16 7 O -0.53 -11.93 15.10 5.55 0.08 -11.85 16 8 N -0.63 -10.24 3.24 -180.37 -0.58 -10.82 16 9 C 0.09 1.12 7.91 -3.66 -0.03 1.09 16 10 C -0.11 -1.52 4.36 -90.08 -0.39 -1.91 16 11 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 12 C -0.12 -2.02 5.70 -26.25 -0.15 -2.17 16 13 C 0.14 3.06 4.32 -3.51 -0.02 3.05 16 14 N -0.59 -14.53 2.67 -174.56 -0.47 -15.00 16 15 C -0.35 -10.31 9.64 -15.06 -0.15 -10.45 16 16 H 0.06 2.04 8.02 -52.48 -0.42 1.62 16 17 C 0.00 0.03 4.83 -17.43 -0.08 -0.06 16 18 N -0.90 -28.48 13.70 55.49 0.76 -27.72 16 19 Si 1.02 25.59 26.93 -169.99 -4.58 21.02 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.27 -6.11 4.74 56.52 0.27 -5.84 16 23 C 0.14 3.04 6.17 -5.59 -0.03 3.00 16 24 C 0.13 2.17 4.29 -69.57 -0.30 1.87 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.06 1.00 8.10 -51.93 -0.42 0.57 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.85 7.97 -51.93 -0.41 0.44 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 39 H 0.07 1.56 5.62 -51.93 -0.29 1.27 16 40 H 0.04 0.73 6.75 -51.93 -0.35 0.38 16 41 H 0.27 8.41 8.73 -40.82 -0.36 8.06 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 1.85 6.33 -51.93 -0.33 1.52 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -34.58 339.12 -8.02 -42.60 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.40 Total: -0.96 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.57 Total: 3.40 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.29 Total: -53.54 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.28 Total: -17.62 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.58 Total: 21.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.58 -8.02 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221432762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.772 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds