Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 C 1.52999 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47390 * 305.00045 * 4 3 2 6 6 C 1.52999 * 109.46934 * 65.00049 * 4 3 2 7 7 C 1.50705 * 109.47447 * 184.99823 * 4 3 2 8 8 O 1.21283 * 119.99826 * 327.96046 * 7 4 3 9 9 N 1.34773 * 119.99975 * 147.95042 * 7 4 3 10 10 C 1.47800 * 135.01427 * 5.75133 * 9 7 4 11 11 C 1.54652 * 85.79569 * 153.78116 * 10 9 7 12 12 H 1.08997 * 114.44052 * 140.42495 * 11 10 9 13 13 C 1.53007 * 110.83552 * 270.23157 * 11 10 9 14 14 C 1.53103 * 109.44617 * 143.88875 * 13 11 10 15 15 N 1.46623 * 108.00507 * 301.02138 * 14 13 11 16 16 C 1.36939 * 119.88973 * 237.30398 * 15 14 13 17 17 H 1.08001 * 119.99858 * 26.48729 * 16 15 14 18 18 C 1.38810 * 120.00050 * 206.76299 * 16 15 14 19 19 N 1.31618 * 119.99855 * 11.40128 * 18 16 15 20 20 Si 1.86800 * 120.00038 * 191.40578 * 18 16 15 21 21 H 1.48496 * 109.46854 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46931 * 119.99861 * 20 18 16 23 23 H 1.48501 * 109.47090 * 239.99549 * 20 18 16 24 24 C 1.45672 * 120.21953 * 57.58770 * 15 14 13 25 25 C 1.46817 * 135.01148 * 185.71664 * 9 7 4 26 26 H 1.09003 * 111.56334 * 94.50759 * 25 9 7 27 27 H 1.09002 * 109.46960 * 60.00271 * 1 2 3 28 28 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47191 * 299.99801 * 1 2 3 30 30 H 1.08999 * 109.47107 * 59.99836 * 3 2 1 31 31 H 1.09000 * 109.47377 * 300.00092 * 3 2 1 32 32 H 1.09004 * 109.46911 * 63.75310 * 6 4 3 33 33 H 1.08999 * 109.47551 * 183.74981 * 6 4 3 34 34 H 1.08996 * 109.47317 * 303.74973 * 6 4 3 35 35 H 1.09007 * 113.82272 * 39.56341 * 10 9 7 36 36 H 1.08998 * 113.93522 * 268.01320 * 10 9 7 37 37 H 1.09001 * 109.47941 * 23.89026 * 13 11 10 38 38 H 1.09005 * 109.47478 * 263.87401 * 13 11 10 39 39 H 1.09000 * 109.75617 * 181.40042 * 14 13 11 40 40 H 1.08997 * 109.79818 * 60.67467 * 14 13 11 41 41 H 0.97002 * 120.00217 * 180.02562 * 19 18 16 42 42 H 1.08997 * 108.71991 * 81.47787 * 24 15 14 43 43 H 1.08993 * 108.71775 * 199.50534 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9962 0.5365 -1.3064 7 6 4.1479 2.5561 0.1244 8 8 3.5850 3.5172 -0.3554 9 7 5.3212 2.7145 0.7685 10 6 6.3172 1.8007 1.3663 11 6 7.3424 2.9277 1.1008 12 1 8.0758 3.0665 1.8950 13 6 7.9694 2.7773 -0.2868 14 6 8.2065 4.1635 -0.8920 15 7 6.9140 4.8512 -0.9698 16 6 6.4563 5.3094 -2.1764 17 1 6.7759 4.8329 -3.0914 18 6 5.5861 6.3898 -2.2238 19 7 5.3758 7.1132 -1.1445 20 14 4.7134 6.8169 -3.8192 21 1 5.1185 5.8570 -4.8773 22 1 3.2444 6.7395 -3.6159 23 1 5.0839 8.1942 -4.2327 24 6 6.1179 5.0542 0.2331 25 6 6.1399 3.8663 1.1666 26 1 5.9266 4.1748 2.1901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.7395 1.1853 -2.1439 33 1 5.0759 0.3896 -1.2783 34 1 3.5015 -0.4270 -1.4283 35 1 6.4937 0.8981 0.7811 36 1 6.1513 1.5967 2.4241 37 1 7.2966 2.2101 -0.9301 38 1 8.9200 2.2508 -0.2009 39 1 8.6303 4.0617 -1.8911 40 1 8.8883 4.7310 -0.2587 41 1 4.7674 7.8680 -1.1775 42 1 6.5004 5.9267 0.7627 43 1 5.0863 5.2502 -0.0591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221439920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -20.044897 kcal Electronic energy + Delta-G solvation = -23979.903136 eV Core-core repulsion = 20641.366714 eV Total energy + Delta-G solvation = -3338.536422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42108 -38.48446 -37.27320 -35.14248 -33.34111 -32.07928 -30.10612 -28.88400 -27.35773 -26.88164 -25.68917 -23.84106 -23.44410 -21.92552 -20.95721 -19.27628 -17.75222 -17.25241 -16.21946 -16.02348 -15.75747 -15.51752 -15.33041 -14.72570 -14.16671 -13.97003 -13.62401 -13.26755 -13.17127 -13.04991 -12.69661 -12.36755 -12.26899 -12.02274 -11.73892 -11.56363 -11.41020 -11.16959 -11.06518 -10.77748 -10.66544 -10.60778 -10.42674 -10.13764 -9.83275 -9.78913 -9.69386 -9.56208 -8.82093 -8.26574 -8.05053 -6.54094 -5.62028 -3.05911 3.10294 3.26270 3.48586 3.55659 3.57052 3.88540 4.62480 4.74894 4.77600 4.94235 5.05409 5.23883 5.27563 5.29183 5.41471 5.46587 5.52751 5.54466 5.59771 5.64042 5.69207 5.75596 5.80493 5.92149 5.96174 6.00931 6.16887 6.25138 6.35258 6.36700 6.43068 6.56721 6.63188 6.81903 7.03338 7.09101 7.55293 7.82432 7.98483 8.35389 8.61951 8.80234 9.39572 10.03074 10.51581 11.46020 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.006854 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.734734 B = 4084.005133 C = 5352.773548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.101 4.101 5 H 0.088 0.912 6 C -0.133 4.133 7 C 0.539 3.461 8 O -0.515 6.515 9 N -0.629 5.629 10 C 0.094 3.906 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.117 4.117 14 C 0.147 3.853 15 N -0.585 5.585 16 C -0.249 4.249 17 H 0.062 0.938 18 C 0.011 3.989 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.292 1.292 24 C 0.167 3.833 25 C 0.123 3.877 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 -14.650 6.620 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.123 4.123 5 H 0.107 0.893 6 C -0.191 4.191 7 C 0.327 3.673 8 O -0.390 6.390 9 N -0.366 5.366 10 C -0.029 4.029 11 C -0.129 4.129 12 H 0.104 0.896 13 C -0.156 4.156 14 C 0.020 3.980 15 N -0.307 5.307 16 C -0.379 4.379 17 H 0.080 0.920 18 C -0.188 4.188 19 N -0.550 5.550 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.219 1.219 24 C 0.041 3.959 25 C 0.019 3.981 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.077 -14.152 6.248 15.609 hybrid contribution -0.790 0.373 -0.553 1.034 sum -2.867 -13.779 5.696 15.183 Atomic orbital electron populations 1.22709 0.81031 1.02409 1.00179 1.87787 1.19648 1.28223 1.95543 1.22270 0.91940 0.83960 1.01579 1.21102 0.94539 0.95372 1.01246 0.89326 1.21622 1.01136 1.00883 0.95471 1.19770 0.79292 0.89992 0.78231 1.90795 1.60688 1.41640 1.45857 1.49807 1.19994 1.10669 1.56099 1.23561 0.86580 0.95055 0.97713 1.22854 0.95740 0.95364 0.98928 0.89645 1.21860 0.98879 1.00436 0.94452 1.20747 0.88739 0.90378 0.98099 1.43472 1.15480 1.66673 1.05095 1.19124 1.25134 1.08828 0.84798 0.92008 1.24968 1.01095 0.95805 0.96901 1.69994 1.38605 1.18964 1.27471 0.86229 0.79784 0.77510 0.83252 1.20496 1.21585 1.21903 1.20205 1.00139 0.89542 0.86061 1.22762 0.85721 0.90854 0.98752 0.91100 0.93953 0.89761 0.94165 0.93111 0.91742 0.91815 0.92353 0.91232 0.90693 0.90570 0.92088 0.92782 0.92620 0.96259 0.93896 0.95211 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.32 10.18 -35.23 -0.36 -5.68 16 3 C 0.08 1.19 4.86 37.16 0.18 1.37 16 4 C -0.10 -1.55 2.81 -91.77 -0.26 -1.81 16 5 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 6 C -0.13 -1.94 9.11 37.16 0.34 -1.60 16 7 C 0.54 10.66 7.04 -10.98 -0.08 10.58 16 8 O -0.52 -12.84 15.37 5.55 0.09 -12.75 16 9 N -0.63 -11.42 3.35 -173.81 -0.58 -12.00 16 10 C 0.09 1.25 7.78 -3.01 -0.02 1.23 16 11 C -0.11 -1.68 4.39 -89.97 -0.40 -2.07 16 12 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -1.95 5.66 -26.67 -0.15 -2.10 16 14 C 0.15 3.06 6.47 -3.92 -0.03 3.03 16 15 N -0.58 -15.07 3.02 -174.88 -0.53 -15.59 16 16 C -0.25 -7.19 9.54 -15.06 -0.14 -7.33 16 17 H 0.06 1.77 7.84 -52.49 -0.41 1.36 16 18 C 0.01 0.32 5.02 -17.43 -0.09 0.23 16 19 N -0.91 -27.72 10.85 55.49 0.60 -27.12 16 20 Si 0.90 23.50 29.57 -169.99 -5.03 18.47 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 C 0.17 4.18 4.59 -5.45 -0.02 4.16 16 25 C 0.12 2.37 4.24 -69.43 -0.29 2.07 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 35 H 0.07 0.89 7.97 -51.92 -0.41 0.48 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.03 0.81 7.95 -51.93 -0.41 0.40 16 43 H 0.11 3.12 4.85 -51.93 -0.25 2.87 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -34.28 341.86 -7.82 -42.10 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.31 Total: -1.79 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.15 Total: 9.21 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.51 Total: -54.71 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.27 Total: -18.44 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.03 Total: 18.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.28 -7.82 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221439920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.055 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds