Wall clock time and date at job start Tue Mar 31 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99744 * 2 1 4 4 O 1.42901 * 109.46981 * 134.99858 * 3 2 1 5 5 C 1.42902 * 114.00048 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47260 * 29.99472 * 5 4 3 7 7 C 1.53006 * 109.46399 * 269.99655 * 5 4 3 8 8 C 1.50691 * 109.47426 * 150.00086 * 5 4 3 9 9 O 1.21280 * 120.00088 * 4.99250 * 8 5 4 10 10 N 1.34780 * 120.00213 * 184.99868 * 8 5 4 11 11 C 1.46926 * 120.62730 * 359.97438 * 10 8 5 12 12 C 1.53191 * 108.89109 * 126.46248 * 11 10 8 13 13 C 1.53044 * 109.31440 * 54.56430 * 12 11 10 14 14 C 1.53040 * 109.53662 * 298.63203 * 13 12 11 15 15 H 1.08994 * 109.49843 * 301.38341 * 14 13 12 16 16 N 1.46492 * 109.49822 * 181.31643 * 14 13 12 17 17 C 1.36936 * 120.00090 * 84.99734 * 16 14 13 18 18 H 1.08002 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00163 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00151 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47383 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47153 * 120.00540 * 21 19 17 24 24 H 1.48499 * 109.47108 * 239.99989 * 21 19 17 25 25 C 1.46957 * 120.65462 * 179.81159 * 10 8 5 26 26 H 1.07995 * 119.99949 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99950 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99950 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47059 * 15.00020 * 3 2 1 30 30 H 1.08995 * 109.47190 * 254.99619 * 3 2 1 31 31 H 1.08995 * 109.47178 * 60.00428 * 7 5 4 32 32 H 1.09001 * 109.46817 * 179.97438 * 7 5 4 33 33 H 1.08999 * 109.47265 * 299.99814 * 7 5 4 34 34 H 1.09002 * 109.58861 * 6.60251 * 11 10 8 35 35 H 1.08996 * 109.58519 * 246.32142 * 11 10 8 36 36 H 1.09003 * 109.49294 * 174.51508 * 12 11 10 37 37 H 1.08997 * 109.50161 * 294.61021 * 12 11 10 38 38 H 1.08994 * 109.45986 * 58.65006 * 13 12 11 39 39 H 1.09001 * 109.45959 * 178.62334 * 13 12 11 40 40 H 0.97003 * 120.00393 * 264.99866 * 16 14 13 41 41 H 0.96993 * 120.00461 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46843 * 113.75468 * 25 10 8 43 43 H 1.08997 * 109.71602 * 353.46961 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9076 2.4354 1.0329 6 1 3.2832 3.2950 0.7894 7 6 5.0699 2.3519 0.0414 8 6 4.4497 2.5881 2.4306 9 8 4.2690 1.7126 3.2502 10 7 5.1353 3.6978 2.7701 11 6 5.3627 4.7668 1.7881 12 6 4.8761 6.0941 2.3784 13 6 5.5562 6.3268 3.7295 14 6 5.1764 5.2012 4.6943 15 1 4.0931 5.1722 4.8112 16 7 5.8025 5.4414 5.9967 17 6 5.1889 6.2546 6.9118 18 1 4.2432 6.7185 6.6735 19 6 5.7819 6.4818 8.1461 20 7 6.9343 5.9161 8.4367 21 14 4.9445 7.5905 9.3947 22 1 3.6693 8.0989 8.8286 23 1 4.6635 6.8188 10.6320 24 1 5.8349 8.7346 9.7164 25 6 5.6667 3.8635 4.1301 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3854 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 4.6779 2.2415 -0.9696 32 1 5.6654 3.2629 0.1022 33 1 5.6943 1.4923 0.2850 34 1 4.8090 4.5481 0.8750 35 1 6.4268 4.8355 1.5626 36 1 5.1282 6.9084 1.6991 37 1 3.7956 6.0565 2.5167 38 1 6.6376 6.3397 3.5942 39 1 5.2302 7.2824 4.1403 40 1 6.6518 5.0245 6.2109 41 1 7.3485 6.0745 9.2994 42 1 6.7562 3.8578 4.0976 43 1 5.3159 3.0490 4.7638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222068163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:15 Heat of formation + Delta-G solvation = -43.911632 kcal Electronic energy + Delta-G solvation = -22633.666292 eV Core-core repulsion = 19294.094931 eV Total energy + Delta-G solvation = -3339.571361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33265 -38.32189 -37.04836 -34.68770 -34.20570 -32.43902 -31.50817 -30.93278 -28.20879 -26.56945 -25.61560 -24.08413 -23.15085 -22.05293 -20.47515 -20.03262 -19.00042 -17.54921 -17.19121 -16.69556 -16.00167 -15.90294 -14.99598 -14.85511 -14.50632 -14.19196 -14.06937 -13.61575 -13.45933 -13.26389 -13.13272 -12.94828 -12.71134 -12.41584 -12.38610 -12.18175 -11.67020 -11.19096 -11.08282 -10.93955 -10.91957 -10.66862 -10.42793 -10.35681 -10.22422 -10.04802 -9.77158 -9.68919 -9.30660 -8.92340 -8.41513 -6.99418 -5.78198 -3.07896 1.85511 2.71891 2.83140 3.42989 3.48671 3.50886 3.72295 4.38057 4.57485 4.60384 4.67734 4.82009 4.85664 4.90153 5.01633 5.08225 5.21374 5.22014 5.34441 5.42406 5.48380 5.54742 5.57763 5.64275 5.73662 5.79795 5.86752 6.01096 6.15007 6.22418 6.27727 6.34877 6.37349 6.52669 6.65590 6.83403 6.93832 7.03230 7.54840 7.69320 8.31956 8.39950 9.51006 10.06182 10.41216 11.44362 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.003456 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.073494 B = 8098.813894 C = 8550.115345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.072 3.928 6 H 0.085 0.915 7 C -0.178 4.178 8 C 0.513 3.487 9 O -0.520 6.520 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.168 3.832 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.107 3.893 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.066 0.934 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -5.182 -22.528 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.103 0.897 7 C -0.236 4.236 8 C 0.299 3.701 9 O -0.394 6.394 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.057 3.943 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.015 4.015 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.936 -5.733 -21.840 23.621 hybrid contribution -0.134 0.850 0.591 1.044 sum -7.070 -4.883 -21.250 22.921 Atomic orbital electron populations 1.23837 0.95535 1.02313 1.00060 1.22704 0.95624 0.98136 1.00196 1.21660 0.88786 0.96238 0.92435 1.88089 1.44102 1.34613 1.60240 1.21878 0.93923 0.89336 0.93769 0.89737 1.22422 0.98230 1.04164 0.98743 1.20257 0.78631 0.82059 0.89131 1.90727 1.56870 1.40333 1.51485 1.48043 1.54924 1.17943 1.12947 1.21963 1.01316 0.87630 0.91215 1.21958 1.01008 0.95859 0.98518 1.22284 1.00015 1.01677 0.93808 1.20479 0.96798 0.90502 0.86480 0.93224 1.42315 1.25177 1.57315 1.11401 1.19247 1.03013 1.20490 0.94198 0.91107 1.24754 0.97296 1.00878 0.97928 1.69670 1.17707 1.47668 1.22903 0.86115 0.78459 0.79980 0.81610 1.20555 1.21812 1.21866 1.22019 0.98161 1.00186 0.81130 0.87734 0.88410 0.86457 0.92624 0.92206 0.91354 0.90133 0.90947 0.90121 0.91076 0.91237 0.91859 0.92399 0.91515 0.78170 0.93493 0.91588 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 14.31 29.01 0.42 -0.99 16 2 C -0.15 -1.37 9.89 -36.02 -0.36 -1.73 16 3 C 0.09 0.81 6.16 36.01 0.22 1.03 16 4 O -0.35 -4.72 9.51 -55.09 -0.52 -5.25 16 5 C 0.07 0.84 2.30 -27.88 -0.06 0.78 16 6 H 0.08 0.78 7.08 -51.93 -0.37 0.41 16 7 C -0.18 -1.55 9.10 37.16 0.34 -1.22 16 8 C 0.51 8.22 7.12 -10.99 -0.08 8.14 16 9 O -0.52 -10.84 15.93 -14.30 -0.23 -11.07 16 10 N -0.60 -8.92 2.98 -172.72 -0.51 -9.43 16 11 C 0.10 1.10 4.97 -3.71 -0.02 1.08 16 12 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 13 C -0.14 -2.28 5.46 -26.69 -0.15 -2.43 16 14 C 0.17 3.35 2.92 -67.79 -0.20 3.15 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.02 5.12 -53.30 -0.27 -18.29 16 17 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.11 1.93 5.90 -3.67 -0.02 1.91 16 26 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.10 0.67 7.90 -52.49 -0.41 0.26 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.06 0.48 7.80 -51.93 -0.41 0.07 16 30 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 31 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.08 0.59 5.41 -51.93 -0.28 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.64 4.66 -51.93 -0.24 0.40 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.92 7.02 -51.93 -0.36 1.56 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -33.79 347.86 -7.89 -41.68 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.98 Total: 6.38 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.32 Total: 0.73 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.06 Total: -55.15 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.75 Total: -16.32 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.79 -7.89 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222068163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.229 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds