Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 O 1.42900 * 109.47265 * 135.00277 * 3 2 1 5 5 C 1.42905 * 114.00074 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46610 * 329.99409 * 5 4 3 7 7 C 1.52997 * 109.47264 * 89.99687 * 5 4 3 8 8 C 1.50697 * 109.46996 * 210.00118 * 5 4 3 9 9 O 1.21285 * 120.00040 * 354.99689 * 8 5 4 10 10 N 1.34778 * 119.99902 * 174.99831 * 8 5 4 11 11 C 1.46919 * 120.62954 * 359.72181 * 10 8 5 12 12 C 1.52772 * 109.00537 * 233.58258 * 11 10 8 13 13 C 1.53045 * 109.37876 * 305.58918 * 12 11 10 14 14 C 1.53036 * 109.54021 * 61.24302 * 13 12 11 15 15 H 1.08996 * 109.50102 * 58.58406 * 14 13 12 16 16 N 1.46502 * 109.52104 * 178.66530 * 14 13 12 17 17 C 1.36929 * 120.00208 * 274.84658 * 16 14 13 18 18 H 1.08003 * 119.99618 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00273 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47018 * 90.00428 * 21 19 17 23 23 H 1.48501 * 109.46854 * 210.00414 * 21 19 17 24 24 H 1.48496 * 109.47080 * 330.00322 * 21 19 17 25 25 C 1.46933 * 120.62852 * 179.97438 * 10 8 5 26 26 H 1.08001 * 119.99823 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00142 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00296 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47606 * 14.99732 * 3 2 1 30 30 H 1.09003 * 109.47425 * 255.00375 * 3 2 1 31 31 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.46832 * 60.00108 * 7 5 4 33 33 H 1.09004 * 109.47261 * 300.00089 * 7 5 4 34 34 H 1.09003 * 109.58962 * 353.41120 * 11 10 8 35 35 H 1.09000 * 109.59110 * 113.84397 * 11 10 8 36 36 H 1.08997 * 109.56502 * 185.55125 * 12 11 10 37 37 H 1.09001 * 109.38670 * 65.51368 * 12 11 10 38 38 H 1.08996 * 109.45902 * 301.21301 * 13 12 11 39 39 H 1.09006 * 109.44377 * 181.25437 * 13 12 11 40 40 H 0.97003 * 119.99934 * 94.85538 * 16 14 13 41 41 H 0.96997 * 120.00327 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58580 * 246.15914 * 25 10 8 43 43 H 1.09002 * 109.58481 * 6.43834 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4354 1.0328 6 1 3.9127 2.9320 0.0625 7 6 3.3030 3.3709 2.0815 8 6 5.3201 2.0864 1.4257 9 8 5.6062 0.9416 1.7063 10 7 6.2653 3.0463 1.4652 11 6 5.9354 4.4362 1.1221 12 6 6.8988 4.9240 0.0414 13 6 8.3395 4.7179 0.5148 14 6 8.5920 3.2274 0.7523 15 1 8.4093 2.6759 -0.1700 16 7 9.9804 3.0273 1.1748 17 6 10.9710 2.9077 0.2370 18 1 10.7288 2.9613 -0.8142 19 6 12.2866 2.7186 0.6373 20 7 12.5819 2.6538 1.9182 21 14 13.6381 2.5563 -0.6421 22 1 14.1876 3.8999 -0.9549 23 1 14.7210 1.6899 -0.1110 24 1 13.0800 1.9498 -1.8774 25 6 7.6466 2.7215 1.8469 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3855 2.1162 0.2659 30 1 2.4755 1.4869 -0.9927 31 1 3.8990 4.2815 2.1430 32 1 3.2980 2.8742 3.0518 33 1 2.2814 3.6234 1.7973 34 1 4.9128 4.4875 0.7482 35 1 6.0351 5.0647 2.0071 36 1 6.7266 5.9832 -0.1500 37 1 6.7322 4.3570 -0.8745 38 1 8.4984 5.2658 1.4436 39 1 9.0277 5.0861 -0.2462 40 1 10.1980 2.9793 2.1189 41 1 13.5011 2.5213 2.1980 42 1 7.8883 3.2074 2.7921 43 1 7.7519 1.6419 1.9536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222068169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = -43.983745 kcal Electronic energy + Delta-G solvation = -22616.752966 eV Core-core repulsion = 19277.178479 eV Total energy + Delta-G solvation = -3339.574488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34072 -38.33085 -37.05649 -34.68869 -34.21416 -32.44519 -31.52491 -30.94393 -28.21588 -26.54636 -25.62988 -24.08891 -23.15996 -22.04997 -20.47725 -20.03798 -18.98669 -17.59591 -17.19267 -16.66760 -16.15344 -15.50769 -15.34293 -14.69350 -14.60053 -14.22932 -13.84980 -13.80660 -13.49429 -13.34841 -13.10594 -12.90689 -12.72178 -12.43701 -12.32596 -12.15297 -11.67472 -11.18607 -11.08423 -10.93702 -10.90386 -10.67098 -10.43737 -10.36316 -10.31650 -10.07522 -9.72778 -9.62966 -9.36312 -8.91892 -8.41795 -6.99562 -5.78036 -3.07736 1.83324 2.71597 2.83338 3.43124 3.48526 3.50330 3.71494 4.37545 4.57427 4.59880 4.71493 4.74626 4.85312 4.91152 5.05476 5.10328 5.16141 5.21656 5.34218 5.43000 5.48555 5.54430 5.57531 5.64125 5.73766 5.79813 5.86706 6.01179 6.14847 6.22292 6.26968 6.32701 6.37232 6.52605 6.65555 6.83289 6.93619 7.03189 7.54577 7.68810 8.31627 8.40084 9.51092 10.06253 10.41349 11.44471 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.003350 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.512958 B = 8357.023011 C = 8738.882568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.072 3.928 6 H 0.085 0.915 7 C -0.178 4.178 8 C 0.513 3.487 9 O -0.520 6.520 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.135 4.135 13 C -0.137 4.137 14 C 0.168 3.832 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.107 3.893 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.613 4.567 -2.987 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.008 3.992 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.103 0.897 7 C -0.235 4.235 8 C 0.299 3.701 9 O -0.394 6.394 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.174 4.174 13 C -0.178 4.178 14 C 0.057 3.943 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.015 4.015 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.297 3.723 -2.858 23.765 hybrid contribution 0.855 0.292 -0.579 1.073 sum -22.442 4.015 -3.437 23.056 Atomic orbital electron populations 1.23815 0.95468 1.02211 1.00548 1.22752 0.95583 0.98338 0.99742 1.21664 0.89009 0.96066 0.92423 1.88089 1.43833 1.35165 1.59950 1.21879 0.89887 0.87166 0.99966 0.89724 1.22413 1.01630 0.99471 0.99998 1.20262 0.86181 0.85338 0.78292 1.90727 1.81418 1.19657 1.47646 1.48039 1.09871 1.08103 1.67829 1.21876 0.98986 0.82351 0.98871 1.21890 0.96674 1.00727 0.98103 1.22285 0.93770 1.00308 1.01419 1.20480 0.85503 0.92877 0.95395 0.93215 1.42307 1.00297 1.86824 1.06762 1.19198 0.86978 1.41923 0.88910 0.91169 1.24751 0.97334 1.02698 0.96041 1.69656 1.18464 1.56598 1.13251 0.86184 0.81997 0.77445 0.80532 1.21723 1.21729 1.20740 1.22024 0.78584 1.02768 0.98133 0.88496 0.87764 0.86325 0.92644 0.92124 0.90143 0.90958 0.91386 0.90127 0.91086 0.91211 0.91877 0.92401 0.91518 0.78169 0.93440 0.91570 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 14.31 29.01 0.42 -0.91 16 2 C -0.15 -1.35 9.89 -36.03 -0.36 -1.71 16 3 C 0.08 0.80 6.16 36.00 0.22 1.03 16 4 O -0.35 -4.72 9.51 -55.09 -0.52 -5.24 16 5 C 0.07 0.84 2.30 -27.89 -0.06 0.78 16 6 H 0.09 0.78 7.06 -51.93 -0.37 0.41 16 7 C -0.18 -1.57 9.10 37.16 0.34 -1.23 16 8 C 0.51 8.19 7.12 -10.99 -0.08 8.11 16 9 O -0.52 -10.80 15.92 -14.31 -0.23 -11.02 16 10 N -0.60 -8.90 2.98 -173.00 -0.52 -9.41 16 11 C 0.10 1.10 4.94 -3.93 -0.02 1.08 16 12 C -0.14 -1.63 6.07 -26.83 -0.16 -1.79 16 13 C -0.14 -2.28 5.47 -26.69 -0.15 -2.43 16 14 C 0.17 3.34 2.92 -67.79 -0.20 3.15 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.00 5.12 -53.29 -0.27 -18.28 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.11 1.93 5.91 -3.69 -0.02 1.91 16 26 H 0.10 0.57 7.90 -52.49 -0.41 0.16 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.06 0.41 7.59 -51.93 -0.39 0.02 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.08 0.59 5.43 -51.93 -0.28 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.08 0.64 4.68 -51.93 -0.24 0.40 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -33.66 347.83 -7.90 -41.56 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.98 Total: 6.37 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.32 Total: 0.78 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.06 Total: -55.11 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.75 Total: -16.26 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.66 -7.90 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222068169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.428 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds