Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99683 * 2 1 4 4 O 1.42905 * 109.46874 * 135.00450 * 3 2 1 5 5 C 1.42901 * 113.99507 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46845 * 329.98969 * 5 4 3 7 7 C 1.52994 * 109.47362 * 90.00088 * 5 4 3 8 8 C 1.50700 * 109.46556 * 209.99747 * 5 4 3 9 9 O 1.21286 * 120.00316 * 351.94079 * 8 5 4 10 10 N 1.34781 * 120.00266 * 171.93972 * 8 5 4 11 11 C 1.46924 * 120.63427 * 174.86285 * 10 8 5 12 12 C 1.53190 * 108.77617 * 126.66522 * 11 10 8 13 13 C 1.53040 * 109.31225 * 54.63506 * 12 11 10 14 14 C 1.53037 * 109.53696 * 298.63335 * 13 12 11 15 15 H 1.09002 * 109.52159 * 301.40054 * 14 13 12 16 16 N 1.46496 * 109.49699 * 181.31883 * 14 13 12 17 17 C 1.36948 * 120.00016 * 85.16126 * 16 14 13 18 18 H 1.08002 * 119.99707 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99682 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99416 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00476 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46831 * 90.00289 * 21 19 17 23 23 H 1.48494 * 109.47613 * 210.00370 * 21 19 17 24 24 H 1.48501 * 109.47076 * 330.00819 * 21 19 17 25 25 C 1.46930 * 120.62443 * 355.13909 * 10 8 5 26 26 H 1.07997 * 119.99889 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99687 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99687 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47214 * 14.99945 * 3 2 1 30 30 H 1.08999 * 109.47001 * 254.99925 * 3 2 1 31 31 H 1.09002 * 109.46835 * 186.51663 * 7 5 4 32 32 H 1.09003 * 109.46977 * 306.50829 * 7 5 4 33 33 H 1.08993 * 109.47369 * 66.51379 * 7 5 4 34 34 H 1.09004 * 109.58513 * 246.45509 * 11 10 8 35 35 H 1.08998 * 109.58257 * 6.87413 * 11 10 8 36 36 H 1.08993 * 109.49659 * 294.67939 * 12 11 10 37 37 H 1.09007 * 109.52091 * 174.60341 * 12 11 10 38 38 H 1.09004 * 109.45586 * 178.61299 * 13 12 11 39 39 H 1.09002 * 109.44785 * 58.64917 * 13 12 11 40 40 H 0.96999 * 120.00595 * 265.16510 * 16 14 13 41 41 H 0.96999 * 119.99790 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.58979 * 353.12133 * 25 10 8 43 43 H 1.08997 * 109.58553 * 113.40589 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9077 2.4354 1.0328 6 1 3.9127 2.9320 0.0625 7 6 3.3030 3.3708 2.0816 8 6 5.3201 2.0863 1.4257 9 8 5.5942 0.9531 1.7599 10 7 6.2788 3.0334 1.4058 11 6 7.6333 2.7379 1.8922 12 6 8.6416 3.1124 0.8013 13 6 8.4252 4.5709 0.3913 14 6 7.0142 4.7388 -0.1769 15 1 6.8854 4.0774 -1.0337 16 7 6.8190 6.1283 -0.5982 17 6 7.2227 6.5293 -1.8438 18 1 7.6855 5.8213 -2.5154 19 6 7.0382 7.8460 -2.2427 20 7 7.4258 8.2313 -3.4401 21 14 6.2385 9.0707 -1.0808 22 1 7.2851 9.7278 -0.2574 23 1 5.5108 10.0980 -1.8685 24 1 5.2839 8.3598 -0.1928 25 6 5.9875 4.3828 0.9028 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.8273 4.3262 2.0617 32 1 2.2477 3.5309 1.8604 33 1 3.4031 2.9219 3.0697 34 1 7.8341 3.3209 2.7910 35 1 7.7167 1.6747 2.1175 36 1 8.4978 2.4659 -0.0643 37 1 9.6548 2.9883 1.1837 38 1 9.1576 4.8472 -0.3674 39 1 8.5448 5.2144 1.2628 40 1 6.4038 6.7643 0.0051 41 1 7.2965 9.1513 -3.7190 42 1 4.9851 4.4050 0.4753 43 1 6.0516 5.0996 1.7214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222068170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -43.698533 kcal Electronic energy + Delta-G solvation = -22886.532012 eV Core-core repulsion = 19546.969892 eV Total energy + Delta-G solvation = -3339.562120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38118 -38.32806 -37.19788 -34.51221 -34.29305 -32.84348 -31.68423 -30.71996 -28.83578 -26.46889 -25.67529 -23.76409 -23.60874 -21.73351 -20.41076 -20.14190 -19.05882 -17.81088 -17.56075 -16.62748 -16.14343 -15.49306 -15.32530 -14.84968 -14.68470 -14.30677 -13.94401 -13.76462 -13.62671 -13.34439 -13.02772 -12.87841 -12.69364 -12.46437 -12.41383 -12.19182 -11.66045 -11.45722 -11.19479 -11.08705 -11.07004 -10.75289 -10.58107 -10.41274 -10.27023 -10.18255 -9.69095 -9.59540 -9.42303 -9.02636 -8.53064 -7.40175 -5.86375 -3.24125 1.89400 2.62837 2.78909 3.28009 3.31591 3.38302 3.73445 4.38458 4.49430 4.69003 4.80327 4.82605 4.94377 5.04229 5.07665 5.18284 5.20439 5.24712 5.25700 5.41997 5.44155 5.48698 5.52398 5.57471 5.63487 5.66043 5.81054 5.93957 5.99303 6.13007 6.26389 6.29097 6.32289 6.39222 6.57892 6.70175 6.85412 6.94780 7.42490 7.88208 8.21085 8.31682 9.08692 9.80640 9.98814 11.31561 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.004617 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.152917 B = 6062.669601 C = 7201.650493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.083 3.917 4 O -0.354 6.354 5 C 0.069 3.931 6 H 0.090 0.910 7 C -0.172 4.172 8 C 0.520 3.480 9 O -0.528 6.528 10 N -0.603 5.603 11 C 0.114 3.886 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.171 3.829 15 H 0.060 0.940 16 N -0.746 5.746 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.094 3.906 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.361 0.639 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -11.238 10.663 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.007 3.993 4 O -0.273 6.273 5 C 0.008 3.992 6 H 0.108 0.892 7 C -0.230 4.230 8 C 0.307 3.693 9 O -0.404 6.404 10 N -0.338 5.338 11 C -0.008 4.008 12 C -0.171 4.171 13 C -0.177 4.177 14 C 0.061 3.939 15 H 0.078 0.922 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.030 4.030 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.194 0.806 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.542 -11.995 10.696 18.200 hybrid contribution -0.541 1.403 0.475 1.577 sum -9.083 -10.592 11.171 17.874 Atomic orbital electron populations 1.23824 0.95496 1.02236 1.00478 1.22733 0.95566 0.98224 0.99836 1.21692 0.89027 0.96061 0.92550 1.88043 1.43942 1.35180 1.60099 1.21917 0.89550 0.87199 1.00554 0.89222 1.22284 1.01899 0.99244 0.99533 1.20275 0.86268 0.84829 0.77918 1.90680 1.82207 1.19993 1.47520 1.47999 1.10803 1.11980 1.63049 1.21631 0.80508 1.02199 0.96504 1.21924 0.98262 0.98304 0.98650 1.22232 1.00299 0.94037 1.01176 1.20472 0.91672 0.87517 0.94250 0.92150 1.42680 1.74008 1.05606 1.16546 1.19028 1.33294 0.95237 0.90101 0.89122 1.24676 1.00843 0.96943 0.96397 1.69698 1.52270 1.17387 1.18447 0.86565 0.79440 0.81891 0.80652 1.21018 1.21686 1.20327 1.22282 1.00553 0.82404 0.97720 0.87807 0.88410 0.86446 0.92485 0.91873 0.90384 0.91126 0.91268 0.91601 0.89294 0.91686 0.91145 0.90992 0.92510 0.80602 0.92930 0.89698 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 14.31 29.01 0.42 -1.07 16 2 C -0.15 -1.45 9.89 -36.03 -0.36 -1.81 16 3 C 0.08 0.90 6.16 36.01 0.22 1.12 16 4 O -0.35 -4.98 9.52 -55.01 -0.52 -5.50 16 5 C 0.07 0.89 2.29 -27.89 -0.06 0.83 16 6 H 0.09 1.07 6.68 -51.93 -0.35 0.72 16 7 C -0.17 -1.82 9.21 37.15 0.34 -1.48 16 8 C 0.52 8.02 7.05 -10.98 -0.08 7.94 16 9 O -0.53 -9.93 15.94 -14.23 -0.23 -10.16 16 10 N -0.60 -8.47 2.97 -172.77 -0.51 -8.99 16 11 C 0.11 1.48 6.44 -3.71 -0.02 1.46 16 12 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 13 C -0.14 -2.18 5.47 -26.69 -0.15 -2.33 16 14 C 0.17 2.99 2.92 -67.81 -0.20 2.79 16 15 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 16 N -0.75 -16.05 4.93 -53.31 -0.26 -16.31 16 17 C -0.25 -6.54 10.41 -15.05 -0.16 -6.70 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 21 Si 0.88 20.86 27.74 -169.99 -4.71 16.14 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -5.99 6.52 56.52 0.37 -5.62 16 25 C 0.09 1.32 4.59 -3.71 -0.02 1.30 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.10 0.70 7.90 -52.49 -0.41 0.28 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.06 0.52 7.48 -51.93 -0.39 0.14 16 30 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.08 0.77 6.16 -51.93 -0.32 0.45 16 32 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.36 7.54 5.66 -40.82 -0.23 7.31 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.11 4.98 -51.93 -0.26 0.85 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -32.19 345.37 -7.54 -39.73 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.96 Total: 7.05 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.32 Total: 0.24 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.00 Total: -52.71 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.75 Total: -15.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.19 -7.54 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222068170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.972 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds