Wall clock time and date at job start Tue Mar 31 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00427 * 2 1 4 4 O 1.42898 * 109.47527 * 134.99892 * 3 2 1 5 5 C 1.42900 * 114.00513 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46855 * 30.00188 * 5 4 3 7 7 C 1.52998 * 109.46810 * 270.00043 * 5 4 3 8 8 C 1.50701 * 109.46891 * 150.00297 * 5 4 3 9 9 O 1.21276 * 120.00548 * 10.09453 * 8 5 4 10 10 N 1.34784 * 119.99486 * 190.09724 * 8 5 4 11 11 C 1.46927 * 120.62990 * 5.07425 * 10 8 5 12 12 C 1.52755 * 109.00914 * 233.58548 * 11 10 8 13 13 C 1.53050 * 109.38540 * 305.59136 * 12 11 10 14 14 C 1.53039 * 109.53418 * 61.23962 * 13 12 11 15 15 H 1.08993 * 109.50068 * 58.58977 * 14 13 12 16 16 N 1.46496 * 109.52238 * 178.66828 * 14 13 12 17 17 C 1.36935 * 120.00227 * 274.85380 * 16 14 13 18 18 H 1.07996 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00334 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00062 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99821 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47175 * 90.00581 * 21 19 17 23 23 H 1.48507 * 109.46952 * 210.00276 * 21 19 17 24 24 H 1.48503 * 109.47200 * 330.00046 * 21 19 17 25 25 C 1.46923 * 120.62869 * 185.35825 * 10 8 5 26 26 H 1.08004 * 119.99916 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00426 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99916 * 180.02562 * 2 1 3 29 29 H 1.09009 * 109.47272 * 15.00226 * 3 2 1 30 30 H 1.09000 * 109.47487 * 255.00185 * 3 2 1 31 31 H 1.09003 * 109.47033 * 175.00588 * 7 5 4 32 32 H 1.08997 * 109.47184 * 55.01439 * 7 5 4 33 33 H 1.08998 * 109.47727 * 295.00434 * 7 5 4 34 34 H 1.08997 * 109.58689 * 353.42439 * 11 10 8 35 35 H 1.08999 * 109.57865 * 113.84851 * 11 10 8 36 36 H 1.08996 * 109.56551 * 185.55957 * 12 11 10 37 37 H 1.09001 * 109.38640 * 65.51735 * 12 11 10 38 38 H 1.09000 * 109.45549 * 301.22281 * 13 12 11 39 39 H 1.08999 * 109.44948 * 181.25229 * 13 12 11 40 40 H 0.97006 * 119.99888 * 94.85468 * 16 14 13 41 41 H 0.97001 * 119.99804 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.58763 * 246.15243 * 25 10 8 43 43 H 1.09005 * 109.58462 * 6.44054 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9079 2.4351 1.0329 6 1 3.2835 3.2948 0.7894 7 6 5.0701 2.3517 0.0413 8 6 4.4500 2.5877 2.4307 9 8 4.3504 1.6748 3.2228 10 7 5.0456 3.7389 2.8005 11 6 5.0757 4.8921 1.8905 12 6 6.5211 5.3579 1.7254 13 6 7.1283 5.6285 3.1040 14 6 7.1259 4.3379 3.9265 15 1 7.6947 3.5707 3.4014 16 7 7.7360 4.5897 5.2343 17 6 9.0958 4.5209 5.3802 18 1 9.7185 4.2814 4.5310 19 6 9.6740 4.7589 6.6195 20 7 10.9811 4.6933 6.7595 21 14 8.5970 5.1739 8.0883 22 1 8.2090 3.9223 8.7870 23 1 9.3496 6.0494 9.0224 24 1 7.3762 5.8800 7.6232 25 6 5.6823 3.8623 4.1188 26 1 -0.5400 0.9354 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3856 2.1161 0.2660 30 1 2.4756 1.4867 -0.9926 31 1 5.6136 3.2965 0.0383 32 1 4.6819 2.1528 -0.9576 33 1 5.7428 1.5466 0.3368 34 1 4.6735 4.6022 0.9199 35 1 4.4789 5.7028 2.3084 36 1 6.5445 6.2718 1.1320 37 1 7.0961 4.5815 1.2207 38 1 6.5385 6.3876 3.6178 39 1 8.1525 5.9822 2.9864 40 1 7.1767 4.8052 5.9971 41 1 11.3850 4.8600 7.6255 42 1 5.1361 4.5874 4.7220 43 1 5.6780 2.8937 4.6188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222068171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:22 Heat of formation + Delta-G solvation = -41.498779 kcal Electronic energy + Delta-G solvation = -22710.597191 eV Core-core repulsion = 19371.130459 eV Total energy + Delta-G solvation = -3339.466732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41009 -38.39934 -37.16346 -34.79852 -34.27625 -32.38757 -31.66008 -31.12570 -28.75409 -26.58965 -25.64877 -24.11168 -23.02599 -22.00218 -20.53951 -20.15558 -18.96352 -17.68201 -17.62139 -16.80363 -16.08334 -15.79926 -15.26208 -14.77495 -14.62886 -14.30269 -14.10152 -13.78374 -13.65208 -13.28951 -13.11682 -12.76696 -12.73497 -12.53226 -12.39339 -12.32018 -11.71968 -11.40208 -11.22229 -11.11353 -11.01584 -10.71743 -10.52807 -10.45736 -10.26511 -10.10478 -9.79946 -9.61191 -9.37773 -8.95134 -8.50843 -7.31151 -5.78733 -3.15468 1.80725 2.62701 2.76570 3.37472 3.41056 3.45750 3.66773 4.33504 4.53193 4.58039 4.64323 4.77472 4.81714 4.82374 4.99261 5.04194 5.16014 5.17717 5.31608 5.32699 5.41311 5.45773 5.48342 5.53716 5.64063 5.67980 5.85574 5.91095 6.01637 6.09060 6.23271 6.27543 6.30087 6.40939 6.53832 6.74876 6.87249 6.92000 7.45681 7.95862 8.23970 8.39620 9.17129 9.89579 10.08291 11.39301 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.003515 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.998230 B = 7963.110084 C = 8391.036431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.073 3.927 6 H 0.083 0.917 7 C -0.174 4.174 8 C 0.515 3.485 9 O -0.519 6.519 10 N -0.604 5.604 11 C 0.102 3.898 12 C -0.135 4.135 13 C -0.137 4.137 14 C 0.173 3.827 15 H 0.059 0.941 16 N -0.745 5.745 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.105 3.895 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.220 -1.062 -17.722 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.012 3.988 6 H 0.100 0.900 7 C -0.232 4.232 8 C 0.301 3.699 9 O -0.393 6.393 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.174 4.174 13 C -0.178 4.178 14 C 0.062 3.938 15 H 0.077 0.923 16 N -0.387 5.387 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.018 4.018 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.980 -1.775 -17.188 25.668 hybrid contribution -0.638 0.701 0.914 1.317 sum -19.618 -1.074 -16.274 25.512 Atomic orbital electron populations 1.23829 0.95519 1.02279 1.00228 1.22718 0.95618 0.98203 1.00045 1.21662 0.88732 0.96166 0.92572 1.88096 1.44081 1.34729 1.60188 1.21900 0.94006 0.89187 0.93736 0.89954 1.22327 0.98121 1.04145 0.98608 1.20276 0.78639 0.82205 0.88796 1.90723 1.56033 1.39515 1.53066 1.48004 1.56071 1.12321 1.17537 1.21821 0.98412 0.88477 0.93386 1.21882 0.94942 1.01320 0.99206 1.22244 1.01494 1.00140 0.93894 1.20452 0.90714 0.94775 0.87818 0.92258 1.42670 1.04999 1.85464 1.05615 1.19023 0.81097 1.40681 0.96552 0.89161 1.24669 0.95419 1.01626 0.97276 1.69700 1.08455 1.55907 1.23933 0.86556 0.79980 0.78251 0.83761 1.20952 1.21738 1.20305 1.22013 0.93782 1.03167 0.82836 0.88465 0.87725 0.86389 0.92717 0.92111 0.90266 0.91243 0.90808 0.90146 0.91214 0.91040 0.91528 0.92533 0.90989 0.80570 0.93005 0.91795 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.30 9.89 -36.03 -0.36 -1.65 16 3 C 0.08 0.76 6.16 36.00 0.22 0.98 16 4 O -0.35 -4.57 9.52 -54.94 -0.52 -5.09 16 5 C 0.07 0.82 2.28 -27.88 -0.06 0.76 16 6 H 0.08 0.68 6.80 -51.93 -0.35 0.33 16 7 C -0.17 -1.61 9.19 37.16 0.34 -1.27 16 8 C 0.51 7.92 7.03 -10.98 -0.08 7.84 16 9 O -0.52 -10.44 15.97 -14.14 -0.23 -10.66 16 10 N -0.60 -8.48 2.98 -173.03 -0.52 -9.00 16 11 C 0.10 1.04 5.57 -3.94 -0.02 1.02 16 12 C -0.13 -1.53 5.95 -26.83 -0.16 -1.69 16 13 C -0.14 -2.18 5.47 -26.69 -0.15 -2.32 16 14 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 N -0.75 -17.40 4.93 -53.31 -0.26 -17.67 16 17 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 21 Si 0.88 22.11 27.73 -169.99 -4.71 17.40 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 25 C 0.10 1.77 5.89 -3.71 -0.02 1.74 16 26 H 0.10 0.60 7.90 -52.48 -0.41 0.18 16 27 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 28 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.05 0.42 7.80 -51.92 -0.41 0.02 16 30 H 0.06 0.42 7.78 -51.93 -0.40 0.02 16 31 H 0.08 0.63 5.68 -51.93 -0.30 0.34 16 32 H 0.07 0.50 7.78 -51.93 -0.40 0.09 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.60 4.52 -51.93 -0.23 0.36 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.80 7.04 -51.93 -0.37 1.44 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -34.52 344.58 -7.50 -42.02 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.90 Total: 5.56 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.32 Total: 0.70 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.00 Total: -55.11 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.75 Total: -15.76 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.52 -7.50 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222068171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.517 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds