Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46622 * 2 1 4 4 C 1.42905 * 113.99367 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46659 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99959 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99890 * 179.97438 * 5 4 3 8 8 C 1.47149 * 121.21404 * 359.97438 * 7 5 4 9 9 C 1.52839 * 108.02111 * 122.67149 * 8 7 5 10 10 C 1.53200 * 110.52144 * 57.31604 * 9 8 7 11 11 H 1.08995 * 113.04759 * 71.04838 * 10 9 8 12 12 C 1.56030 * 106.38000 * 195.46285 * 10 9 8 13 13 C 1.54500 * 102.61229 * 78.39697 * 12 10 9 14 14 N 1.46656 * 107.02855 * 22.26315 * 13 12 10 15 15 C 1.36932 * 125.63894 * 182.06863 * 14 13 12 16 16 H 1.08004 * 120.00519 * 180.58877 * 15 14 13 17 17 C 1.38818 * 120.00243 * 0.59250 * 15 14 13 18 18 N 1.31622 * 119.99676 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00465 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46775 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47343 * 119.99965 * 19 17 15 22 22 H 1.48498 * 109.47603 * 240.00205 * 19 17 15 23 23 C 1.46470 * 108.29795 * 2.57500 * 14 13 12 24 24 H 1.08995 * 108.42388 * 88.74853 * 23 14 13 25 25 C 1.46759 * 121.21529 * 179.97438 * 7 5 4 26 26 H 1.09004 * 109.47603 * 299.99826 * 1 2 3 27 27 H 1.08997 * 109.47461 * 60.00335 * 1 2 3 28 28 H 1.09001 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47310 * 240.00190 * 2 1 3 30 30 H 1.08997 * 109.47461 * 119.99664 * 2 1 3 31 31 H 1.08997 * 109.47187 * 60.00325 * 4 3 2 32 32 H 1.09004 * 109.47047 * 299.99691 * 4 3 2 33 33 H 1.09002 * 109.76041 * 242.31715 * 8 7 5 34 34 H 1.08997 * 109.76162 * 3.02306 * 8 7 5 35 35 H 1.08998 * 109.25403 * 177.64953 * 9 8 7 36 36 H 1.09001 * 109.25277 * 297.08093 * 9 8 7 37 37 H 1.09006 * 110.77924 * 196.67920 * 12 10 9 38 38 H 1.08996 * 110.78270 * 319.92780 * 12 10 9 39 39 H 1.09000 * 109.90453 * 142.23485 * 13 12 10 40 40 H 1.08996 * 109.90190 * 263.29167 * 13 12 10 41 41 H 0.97000 * 120.00322 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.22938 * 352.86983 * 25 7 5 43 43 H 1.09000 * 109.22809 * 112.27082 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 -0.0012 6 8 2.9608 3.7729 -0.0006 7 7 5.1208 3.2665 -0.0013 8 6 6.1842 2.2493 -0.0002 9 6 7.0684 2.4885 -1.2237 10 6 7.6387 3.9102 -1.2046 11 1 8.3962 4.0559 -0.4345 12 6 8.1753 4.1885 -2.6431 13 6 6.8837 4.5061 -3.4293 14 7 5.8785 4.9317 -2.4500 15 6 4.5808 5.2654 -2.7323 16 1 3.9182 5.5768 -1.9383 17 6 4.1167 5.2035 -4.0392 18 7 4.9242 4.8245 -5.0070 19 14 2.3463 5.6580 -4.4242 20 1 1.6516 6.0479 -3.1709 21 1 2.3236 6.7968 -5.3770 22 1 1.6563 4.4913 -5.0308 23 6 6.5048 4.9493 -1.1261 24 1 6.9485 5.9322 -0.9679 25 6 5.5292 4.6761 -0.0024 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8332 0.9768 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 6.7798 2.3398 0.9082 34 1 5.7425 1.2543 -0.0535 35 1 7.8887 1.7707 -1.2202 36 1 6.4755 2.3513 -2.1280 37 1 8.8499 5.0447 -2.6453 38 1 8.6711 3.3064 -3.0483 39 1 7.0741 5.3014 -4.1500 40 1 6.5352 3.6124 -3.9468 41 1 4.5999 4.7808 -5.9201 42 1 4.6482 5.3050 -0.1308 43 1 6.0036 4.9132 0.9499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222218875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -47.357897 kcal Electronic energy + Delta-G solvation = -24090.351716 eV Core-core repulsion = 20750.630913 eV Total energy + Delta-G solvation = -3339.720802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97365 -38.39834 -37.18783 -34.95979 -32.78649 -31.62683 -31.09064 -29.51745 -28.38735 -27.10952 -24.57875 -23.55989 -22.79138 -22.50654 -19.98120 -19.76097 -18.22371 -17.04868 -16.61070 -16.27792 -16.20243 -15.28843 -14.83450 -14.64550 -14.28269 -13.92735 -13.79073 -13.52514 -13.06858 -12.77022 -12.50043 -12.44590 -12.40512 -11.94959 -11.60812 -11.44916 -11.30960 -11.26182 -11.12907 -10.88876 -10.74008 -10.66255 -10.02922 -9.83019 -9.79673 -9.62156 -9.61172 -9.47284 -9.13677 -8.47890 -8.08933 -6.72885 -5.59666 -2.92033 3.03310 3.21383 3.51535 3.58088 3.66577 4.04636 4.63650 4.83467 4.99882 5.02259 5.10678 5.18123 5.25167 5.31583 5.33214 5.42237 5.52564 5.54787 5.61596 5.70838 5.74253 5.80441 5.88495 5.99311 6.04110 6.10766 6.15424 6.27964 6.32453 6.46171 6.49809 6.64291 6.76041 6.95507 7.04595 7.23657 7.66332 7.70002 7.91043 7.97323 8.35902 8.74300 9.35441 9.95277 10.57968 11.52009 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.007811 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.736708 B = 3583.871622 C = 5030.593611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.049 3.951 5 C 0.522 3.478 6 O -0.514 6.514 7 N -0.595 5.595 8 C 0.111 3.889 9 C -0.123 4.123 10 C -0.101 4.101 11 H 0.075 0.925 12 C -0.145 4.145 13 C 0.179 3.821 14 N -0.589 5.589 15 C -0.212 4.212 16 H 0.082 0.918 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.153 3.847 24 H 0.028 0.972 25 C 0.116 3.884 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.248 0.752 42 H 0.095 0.905 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -10.755 11.252 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.031 4.031 5 C 0.308 3.692 6 O -0.389 6.389 7 N -0.331 5.331 8 C -0.013 4.013 9 C -0.161 4.161 10 C -0.121 4.121 11 H 0.093 0.907 12 C -0.183 4.183 13 C 0.055 3.945 14 N -0.314 5.314 15 C -0.340 4.340 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.736 3.264 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.045 3.955 24 H 0.045 0.955 25 C -0.007 4.007 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.927 -10.107 11.058 15.264 hybrid contribution -0.553 -0.134 -0.493 0.753 sum 2.374 -10.241 10.565 14.904 Atomic orbital electron populations 1.21721 0.93615 1.01926 1.03522 1.22506 0.95890 0.83832 0.99886 1.88048 1.18899 1.25815 1.95330 1.22211 0.83454 0.95661 1.01734 1.19892 0.82336 0.90043 0.76909 1.90708 1.48684 1.51558 1.47919 1.47721 1.04470 1.07406 1.73457 1.21657 0.89700 0.91177 0.98727 1.21848 0.98720 0.96513 0.99032 1.22384 0.97278 0.95031 0.97429 0.90656 1.23184 0.99563 0.99884 0.95657 1.21077 0.84203 0.99065 0.90194 1.44134 1.08394 1.78778 1.00108 1.19120 0.85253 1.36755 0.92871 0.89988 1.24706 0.97864 1.02080 0.95795 1.69982 1.33696 1.54409 0.99490 0.86107 0.84900 0.77453 0.77988 1.20097 1.22094 1.21992 1.20730 0.91490 0.95581 0.87713 0.95511 1.21375 1.00465 0.81646 0.97183 0.91817 0.91563 0.91212 0.93274 0.93546 0.90471 0.91081 0.91647 0.90848 0.92013 0.90036 0.92817 0.92357 0.94350 0.93589 0.94160 0.88662 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.68 6.66 37.16 0.25 0.93 16 3 O -0.36 -6.26 9.88 -55.14 -0.54 -6.80 16 4 C 0.05 0.76 4.78 36.01 0.17 0.93 16 5 C 0.52 10.32 7.79 -10.98 -0.09 10.23 16 6 O -0.51 -12.66 15.96 -14.35 -0.23 -12.88 16 7 N -0.60 -10.49 2.97 -174.07 -0.52 -11.01 16 8 C 0.11 1.46 6.35 -3.77 -0.02 1.44 16 9 C -0.12 -1.83 5.05 -26.71 -0.13 -1.97 16 10 C -0.10 -1.64 3.68 -88.37 -0.33 -1.97 16 11 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.14 -2.59 6.32 -24.32 -0.15 -2.74 16 13 C 0.18 4.29 4.59 -3.17 -0.01 4.27 16 14 N -0.59 -14.68 3.14 -165.02 -0.52 -15.20 16 15 C -0.21 -6.03 9.69 -15.06 -0.15 -6.18 16 16 H 0.08 2.43 6.53 -52.48 -0.34 2.08 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.93 -27.89 10.31 55.49 0.57 -27.32 16 19 Si 0.90 24.08 29.55 -169.99 -5.02 19.06 16 20 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 22 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 23 C 0.15 3.05 3.00 -68.28 -0.21 2.84 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 C 0.12 2.19 5.67 -4.76 -0.03 2.16 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.11 7.79 -51.93 -0.40 0.70 16 32 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.80 6.02 -51.93 -0.31 0.49 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.54 6.84 -51.93 -0.36 1.19 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 39 H 0.04 1.03 7.59 -51.93 -0.39 0.64 16 40 H 0.05 1.23 6.96 -51.93 -0.36 0.86 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.10 2.13 5.57 -51.93 -0.29 1.84 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -34.94 333.53 -8.71 -43.65 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -7.07 Total: -2.84 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.41 Total: 8.32 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.46 Total: -53.53 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.77 Total: -19.69 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.94 -8.71 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222218875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds