Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46880 * 2 1 4 4 C 1.34772 * 120.00220 * 269.99630 * 3 2 1 5 5 O 1.21284 * 120.00478 * 185.01166 * 4 3 2 6 6 C 1.50709 * 119.99915 * 5.01401 * 4 3 2 7 7 O 1.42898 * 109.47119 * 179.97438 * 6 4 3 8 8 C 1.42897 * 113.99845 * 180.02562 * 7 6 4 9 9 C 1.53935 * 113.73771 * 246.72951 * 8 7 6 10 10 N 1.47958 * 86.18214 * 221.91940 * 9 8 7 11 11 C 1.46901 * 110.99683 * 137.58228 * 10 9 8 12 12 C 1.50700 * 109.47199 * 70.63931 * 11 10 9 13 13 H 1.07992 * 119.99896 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99863 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00468 * 179.97438 * 14 12 11 16 16 Si 1.86810 * 119.99900 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47108 * 90.00150 * 16 14 12 18 18 H 1.48501 * 109.46505 * 209.99999 * 16 14 12 19 19 H 1.48497 * 109.47232 * 329.99590 * 16 14 12 20 20 C 1.47961 * 90.76269 * 24.69066 * 10 9 8 21 21 C 1.46506 * 120.00318 * 90.00047 * 3 2 1 22 22 C 1.52998 * 117.49587 * 2.81536 * 21 3 2 23 23 C 1.52997 * 117.49632 * 294.16027 * 21 3 2 24 24 H 1.08997 * 109.46857 * 300.00297 * 1 2 3 25 25 H 1.08999 * 109.46813 * 60.00144 * 1 2 3 26 26 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47458 * 240.00055 * 2 1 3 28 28 H 1.08999 * 109.46813 * 119.99856 * 2 1 3 29 29 H 1.08994 * 109.47042 * 300.00486 * 6 4 3 30 30 H 1.09007 * 109.46648 * 59.99775 * 6 4 3 31 31 H 1.09004 * 112.94100 * 18.43524 * 8 7 6 32 32 H 1.08999 * 113.75448 * 336.23992 * 9 8 7 33 33 H 1.09004 * 113.75966 * 107.60062 * 9 8 7 34 34 H 1.08996 * 109.46874 * 190.64032 * 11 10 9 35 35 H 1.09011 * 109.47211 * 310.63743 * 11 10 9 36 36 H 0.96993 * 120.00688 * 179.97438 * 15 14 12 37 37 H 1.09000 * 113.75646 * 220.99150 * 20 10 9 38 38 H 1.08997 * 113.76218 * 89.62710 * 20 10 9 39 39 H 1.08995 * 115.55060 * 148.48960 * 21 3 2 40 40 H 1.09006 * 117.49983 * 0.02562 * 22 21 3 41 41 H 1.09005 * 117.50279 * 145.02029 * 22 21 3 42 42 H 1.09003 * 117.50079 * 214.97819 * 23 21 3 43 43 H 1.09007 * 117.49969 * 359.97335 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.7326 3.1262 -1.1692 6 6 1.8859 1.3482 -2.4698 7 8 2.2161 2.2155 -3.5564 8 6 1.9151 1.6743 -4.8442 9 6 3.1607 1.3813 -5.6998 10 7 2.3953 1.9494 -6.8315 11 6 3.2421 2.8247 -7.6530 12 6 4.2429 1.9897 -8.4095 13 1 4.2495 0.9162 -8.2914 14 6 5.1500 2.5962 -9.2522 15 7 6.0236 1.8676 -9.9120 16 14 5.1389 4.4531 -9.4558 17 1 6.0408 5.0669 -8.4482 18 1 5.6089 4.8042 -10.8200 19 1 3.7583 4.9642 -9.2610 20 6 1.5638 2.7404 -5.8976 21 6 2.2625 2.0719 1.2687 22 6 2.0519 1.2760 2.5583 23 6 1.0525 2.3641 2.1582 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4439 0.4168 -2.5653 30 1 0.8170 1.1348 -2.4876 31 1 1.2052 0.8482 -4.8025 32 1 4.0340 1.9707 -5.4203 33 1 3.3798 0.3189 -5.8072 34 1 2.6195 3.3740 -8.3591 35 1 3.7692 3.5289 -7.0091 36 1 6.6616 2.2943 -10.5052 37 1 0.5068 2.7640 -6.1631 38 1 1.9699 3.7273 -5.6760 39 1 3.0674 2.8068 1.2566 40 1 1.7320 0.2383 2.4627 41 1 2.7180 1.4874 3.3948 42 1 1.0614 3.2911 2.7317 43 1 0.0746 2.0429 1.7993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224307936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = -1.602744 kcal Electronic energy + Delta-G solvation = -22167.089299 eV Core-core repulsion = 18829.352590 eV Total energy + Delta-G solvation = -3337.736710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47043 -39.41753 -37.73745 -36.27620 -34.75015 -32.71999 -30.73411 -29.82674 -28.09257 -25.67245 -24.95682 -24.21412 -22.69957 -22.28146 -21.22557 -19.64358 -19.28926 -17.75772 -16.97596 -16.85358 -16.55698 -16.10915 -15.23393 -15.05831 -14.64197 -14.35636 -14.21855 -14.09501 -13.62701 -13.49999 -13.17021 -12.79071 -12.53084 -12.29604 -12.14577 -12.03858 -11.93987 -11.61115 -11.45129 -11.33133 -11.15857 -10.90115 -10.82591 -10.67382 -9.93408 -9.82987 -9.72071 -9.31314 -9.26065 -8.85651 -8.59011 -7.99361 -6.05026 -4.03178 2.34141 2.38856 3.31440 3.38299 3.41436 3.41791 3.73394 4.26997 4.34379 4.43679 4.47557 4.50183 4.58503 4.70344 4.73112 4.82333 4.89478 4.94258 5.09313 5.17419 5.23129 5.28469 5.29695 5.32364 5.39594 5.58320 5.66264 5.72507 5.79977 6.01300 6.07852 6.20724 6.33286 6.38211 6.49986 6.83363 6.98669 7.29425 7.30911 7.75664 7.81766 7.98347 8.60147 9.01894 9.56400 11.08105 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.002967 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.892614 B = 9433.937915 C = 9684.831716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.520 3.480 5 O -0.509 6.509 6 C 0.046 3.954 7 O -0.353 6.353 8 C 0.049 3.951 9 C 0.008 3.992 10 N -0.465 5.465 11 C 0.131 3.869 12 C -0.512 4.512 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.001 4.001 21 C 0.084 3.916 22 C -0.185 4.185 23 C -0.194 4.194 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.032 0.968 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 -4.858 25.431 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.307 3.693 5 O -0.382 6.382 6 C -0.034 4.034 7 O -0.270 6.270 8 C -0.009 4.009 9 C -0.121 4.121 10 N -0.189 5.189 11 C 0.004 3.996 12 C -0.550 4.550 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.131 4.131 21 C -0.020 4.020 22 C -0.223 4.223 23 C -0.233 4.233 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.244 -4.465 24.775 27.994 hybrid contribution 0.383 1.199 0.271 1.288 sum -11.861 -3.266 25.046 27.904 Atomic orbital electron populations 1.22370 0.95598 1.02747 1.02964 1.21721 0.94757 0.82229 1.03987 1.47377 1.66840 1.13913 1.04485 1.20416 0.78166 0.86129 0.84573 1.90739 1.41198 1.19501 1.86802 1.22286 1.00654 0.94002 0.86454 1.88114 1.84369 1.41454 1.13106 1.24535 0.98354 0.97296 0.80709 1.24224 0.95832 1.01949 0.90081 1.68463 1.15739 1.23812 1.10912 1.20676 0.92744 0.92781 0.93427 1.20949 1.13707 0.95657 1.24702 0.90306 1.24905 0.95080 0.98012 0.95262 1.69886 1.19685 1.35521 1.28782 0.86845 0.78898 0.86347 0.77623 1.20191 1.21080 1.19089 1.24229 1.00412 0.96955 0.91463 1.21590 1.00324 0.99668 0.80466 1.23368 1.03437 0.97738 0.97740 1.23501 0.95531 1.00397 1.03841 0.91910 0.92050 0.91066 0.89753 0.89564 0.90233 0.90336 0.88943 0.90431 0.89829 0.94964 0.98774 0.92620 0.89633 0.90952 0.85062 0.88036 0.87767 0.88105 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 10.19 37.16 0.38 -0.51 16 2 C 0.10 0.56 5.44 -4.04 -0.02 0.54 16 3 N -0.59 -5.61 2.80 -166.11 -0.47 -6.07 16 4 C 0.52 6.90 7.74 -10.98 -0.09 6.81 16 5 O -0.51 -9.21 16.27 -14.36 -0.23 -9.45 16 6 C 0.05 0.54 4.93 36.01 0.18 0.72 16 7 O -0.35 -5.79 9.90 -55.14 -0.55 -6.34 16 8 C 0.05 0.78 4.50 -25.80 -0.12 0.66 16 9 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 10 N -0.47 -10.10 6.25 -239.96 -1.50 -11.60 16 11 C 0.13 3.32 3.65 -4.97 -0.02 3.30 16 12 C -0.51 -14.99 9.40 -34.44 -0.32 -15.31 16 13 H 0.08 2.49 8.04 -52.49 -0.42 2.07 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 16 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 20 C 0.00 -0.03 7.81 -2.76 -0.02 -0.05 16 21 C 0.08 0.74 6.15 -67.93 -0.42 0.32 16 22 C -0.19 -1.06 9.74 -26.70 -0.26 -1.32 16 23 C -0.19 -1.33 10.19 -26.70 -0.27 -1.61 16 24 H 0.06 0.32 5.89 -51.93 -0.31 0.02 16 25 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.43 6.48 -51.93 -0.34 0.09 16 28 H 0.09 0.38 5.99 -51.93 -0.31 0.07 16 29 H 0.08 0.76 7.25 -51.93 -0.38 0.39 16 30 H 0.08 0.71 6.94 -51.93 -0.36 0.35 16 31 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16 32 H 0.08 1.66 7.78 -51.93 -0.40 1.25 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.03 0.83 7.20 -51.93 -0.37 0.45 16 35 H -0.01 -0.14 7.12 -51.92 -0.37 -0.51 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 39 H 0.13 1.35 7.75 -51.93 -0.40 0.95 16 40 H 0.10 0.47 6.11 -51.93 -0.32 0.15 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.66 6.11 -51.92 -0.32 0.34 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -35.58 344.18 -9.30 -44.88 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.75 Total: -2.46 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.10 Total: -4.34 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.19 Total: -44.97 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.78 Total: -15.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.58 -9.30 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224307936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.282 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds