Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47315 * 2 1 4 4 C 1.34777 * 119.99924 * 90.00747 * 3 2 1 5 5 O 1.21278 * 119.99890 * 174.92280 * 4 3 2 6 6 C 1.50696 * 119.99909 * 354.91700 * 4 3 2 7 7 O 1.42898 * 109.47229 * 180.02562 * 6 4 3 8 8 C 1.42901 * 114.00228 * 180.02562 * 7 6 4 9 9 H 1.09000 * 110.91551 * 327.54877 * 8 7 6 10 10 C 1.55159 * 111.00342 * 203.64920 * 8 7 6 11 11 C 1.54327 * 102.94078 * 206.42207 * 10 8 7 12 12 N 1.47026 * 107.26902 * 22.19588 * 11 10 8 13 13 C 1.36939 * 125.64227 * 181.03701 * 12 11 10 14 14 H 1.08004 * 119.99270 * 180.02562 * 13 12 11 15 15 C 1.38806 * 120.00415 * 0.02665 * 13 12 11 16 16 N 1.31627 * 119.99873 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00137 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46904 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47309 * 119.99769 * 17 15 13 20 20 H 1.48497 * 109.46822 * 239.99771 * 17 15 13 21 21 C 1.47415 * 108.70361 * 1.05839 * 12 11 10 22 22 C 1.46505 * 120.00016 * 270.00192 * 3 2 1 23 23 C 1.52995 * 117.49797 * 13.52684 * 22 3 2 24 24 C 1.53003 * 117.49693 * 304.86579 * 22 3 2 25 25 H 1.09000 * 109.46494 * 299.99801 * 1 2 3 26 26 H 1.08998 * 109.47086 * 59.99560 * 1 2 3 27 27 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46890 * 239.99923 * 2 1 3 29 29 H 1.09004 * 109.47448 * 120.00653 * 2 1 3 30 30 H 1.09006 * 109.47134 * 60.00746 * 6 4 3 31 31 H 1.09002 * 109.47613 * 300.00670 * 6 4 3 32 32 H 1.09000 * 110.71960 * 88.05942 * 10 8 7 33 33 H 1.08999 * 110.87451 * 324.85534 * 10 8 7 34 34 H 1.08996 * 109.88073 * 262.77883 * 11 10 8 35 35 H 1.08998 * 110.00804 * 141.68264 * 11 10 8 36 36 H 0.96998 * 119.99392 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.36826 * 94.71252 * 21 12 11 38 38 H 1.09005 * 110.36613 * 217.03541 * 21 12 11 39 39 H 1.09003 * 115.54674 * 159.19815 * 22 3 2 40 40 H 1.09004 * 117.50358 * 359.97438 * 23 22 3 41 41 H 1.08998 * 117.49814 * 145.02196 * 23 22 3 42 42 H 1.09000 * 117.49438 * 214.98013 * 24 22 3 43 43 H 1.08998 * 117.50105 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2432 2.0164 1.1672 5 8 2.7339 3.1255 1.1693 6 6 1.8846 1.3487 2.4697 7 8 2.2152 2.2158 3.5564 8 6 1.9140 1.6746 4.8442 9 1 1.0345 1.0323 4.8004 10 6 1.7264 2.8037 5.8918 11 6 2.0965 2.1086 7.2191 12 7 2.9401 0.9515 6.8854 13 6 3.4624 0.0594 7.7835 14 1 4.0733 -0.7609 7.4365 15 6 3.2068 0.2093 9.1395 16 7 2.4627 1.2094 9.5623 17 14 3.9200 -1.0073 10.3646 18 1 4.7148 -2.0311 9.6398 19 1 4.7958 -0.2879 11.3240 20 1 2.8157 -1.6703 11.1036 21 6 3.1308 0.9113 5.4242 22 6 2.2626 2.0718 -1.2688 23 6 1.7001 1.4333 -2.5403 24 6 3.2061 1.4001 -2.2685 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.4418 0.4167 2.5657 31 1 0.8156 1.1363 2.4870 32 1 0.6912 3.1444 5.9104 33 1 2.4012 3.6358 5.6911 34 1 1.1920 1.7737 7.7269 35 1 2.6478 2.7969 7.8595 36 1 2.2838 1.3139 10.5099 37 1 4.0591 1.4119 5.1489 38 1 3.1355 -0.1198 5.0705 39 1 2.2770 3.1605 -1.2162 40 1 1.1487 0.4992 -2.4329 41 1 1.3448 2.1019 -3.3244 42 1 3.8411 2.0470 -2.8739 43 1 3.6456 0.4447 -1.9821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224309381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -17.655577 kcal Electronic energy + Delta-G solvation = -22474.082106 eV Core-core repulsion = 19135.649293 eV Total energy + Delta-G solvation = -3338.432813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.34855 -38.38317 -37.40422 -35.72604 -34.70967 -32.18665 -30.60089 -29.36767 -28.14171 -26.80631 -24.29252 -23.96672 -22.75998 -22.23408 -20.36400 -20.08376 -19.20669 -17.71347 -17.04406 -16.67127 -16.43571 -15.82955 -15.03924 -14.69117 -14.47305 -14.20896 -14.13225 -13.87707 -13.41010 -13.19476 -12.84416 -12.66312 -12.25026 -12.03117 -11.91310 -11.87777 -11.71104 -11.49916 -11.27961 -10.98034 -10.91703 -10.85046 -10.72402 -10.25839 -10.07272 -9.79164 -9.74520 -9.70608 -9.15776 -8.74315 -8.59607 -6.83308 -5.70831 -3.04978 2.44240 2.47214 3.40283 3.45410 3.48248 3.53955 3.88061 4.35032 4.45326 4.52167 4.54252 4.58746 4.70946 4.83853 4.97122 5.11706 5.19919 5.23679 5.31099 5.41514 5.44341 5.46771 5.51392 5.56346 5.64925 5.71204 5.75407 5.82506 5.85390 6.23250 6.31971 6.45111 6.56066 6.68127 6.71117 7.08953 7.53113 7.56391 7.63492 7.83364 8.07565 8.25794 9.21794 9.81866 10.47646 11.40929 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.003117 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.468865 B = 8979.476986 C = 9231.920219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 N -0.591 5.591 4 C 0.521 3.479 5 O -0.511 6.511 6 C 0.047 3.953 7 O -0.355 6.355 8 C 0.070 3.930 9 H 0.068 0.932 10 C -0.136 4.136 11 C 0.178 3.822 12 N -0.604 5.604 13 C -0.228 4.228 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.117 3.883 22 C 0.086 3.914 23 C -0.189 4.189 24 C -0.194 4.194 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.252 0.748 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 -2.754 -23.169 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 N -0.326 5.326 4 C 0.309 3.691 5 O -0.384 6.384 6 C -0.033 4.033 7 O -0.272 6.272 8 C 0.012 3.988 9 H 0.086 0.914 10 C -0.174 4.174 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.356 4.356 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.009 4.009 22 C -0.018 4.018 23 C -0.227 4.227 24 C -0.233 4.233 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.773 -1.984 -22.908 23.484 hybrid contribution 0.195 -1.044 0.638 1.239 sum -4.578 -3.028 -22.270 22.936 Atomic orbital electron populations 1.22292 0.95381 1.02673 1.03046 1.21656 0.94939 0.82199 1.03731 1.47406 1.66604 1.14056 1.04492 1.20446 0.77993 0.86096 0.84601 1.90720 1.41227 1.19662 1.86812 1.22229 1.00622 0.94024 0.86420 1.88022 1.84983 1.41089 1.13150 1.23535 0.97658 0.96490 0.81154 0.91361 1.22974 1.01009 0.97557 0.95896 1.21186 0.95149 0.88244 0.90064 1.44362 1.59183 1.30020 0.99623 1.19107 1.25255 1.04444 0.86789 0.90345 1.24823 1.00257 0.98584 0.96858 1.69974 1.42008 1.31161 1.13797 0.86021 0.78170 0.80121 0.81307 1.20509 1.21707 1.21754 1.21942 0.95459 0.97048 0.86490 1.21576 1.03484 0.96918 0.79849 1.23432 0.96801 1.03457 0.98965 1.23410 0.92938 1.03461 1.03447 0.91986 0.91902 0.91126 0.90001 0.89742 0.90403 0.90451 0.91740 0.91235 0.93301 0.93438 0.93747 0.95298 0.94514 0.84843 0.88112 0.87916 0.88018 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 10.06 37.16 0.37 -0.72 16 2 C 0.10 0.69 5.15 -4.04 -0.02 0.67 16 3 N -0.59 -6.18 2.82 -166.10 -0.47 -6.65 16 4 C 0.52 7.48 7.74 -10.99 -0.09 7.39 16 5 O -0.51 -9.59 16.19 -14.35 -0.23 -9.83 16 6 C 0.05 0.64 4.97 36.00 0.18 0.82 16 7 O -0.35 -6.49 9.69 -55.14 -0.53 -7.02 16 8 C 0.07 1.32 3.49 -24.58 -0.09 1.24 16 9 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 10 C -0.14 -2.76 6.69 -24.89 -0.17 -2.93 16 11 C 0.18 4.46 5.38 -3.06 -0.02 4.44 16 12 N -0.60 -15.91 3.39 -170.08 -0.58 -16.48 16 13 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 14 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 17 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.12 2.56 6.97 -2.53 -0.02 2.54 16 22 C 0.09 0.81 6.25 -67.93 -0.42 0.39 16 23 C -0.19 -1.21 9.51 -26.69 -0.25 -1.46 16 24 C -0.19 -1.44 10.03 -26.69 -0.27 -1.71 16 25 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 26 H 0.06 0.39 7.21 -51.93 -0.37 0.01 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.46 6.25 -51.93 -0.32 0.13 16 29 H 0.08 0.56 6.48 -51.93 -0.34 0.22 16 30 H 0.08 0.92 7.25 -51.93 -0.38 0.55 16 31 H 0.08 0.87 6.91 -51.93 -0.36 0.51 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 35 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.13 1.44 7.62 -51.93 -0.40 1.05 16 40 H 0.10 0.55 5.85 -51.93 -0.30 0.25 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.70 7.83 -51.93 -0.41 0.30 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -34.21 343.51 -9.05 -43.26 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.92 Total: -2.62 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.04 Total: 3.73 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.47 Total: -49.89 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.77 Total: -16.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.21 -9.05 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224309381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.600 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds