Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47572 * 2 1 4 4 C 1.34772 * 120.00445 * 89.99588 * 3 2 1 5 5 O 1.21277 * 120.00164 * 185.04395 * 4 3 2 6 6 C 1.50699 * 119.99585 * 5.04890 * 4 3 2 7 7 O 1.42908 * 109.46852 * 179.97438 * 6 4 3 8 8 C 1.42899 * 113.99574 * 179.97438 * 7 6 4 9 9 H 1.08993 * 110.91855 * 32.45308 * 8 7 6 10 10 C 1.55159 * 111.00211 * 156.35256 * 8 7 6 11 11 C 1.54335 * 103.02438 * 153.37970 * 10 8 7 12 12 N 1.47028 * 107.26038 * 338.14301 * 11 10 8 13 13 C 1.36938 * 125.64363 * 178.84912 * 12 11 10 14 14 H 1.07997 * 120.00099 * 174.73717 * 13 12 11 15 15 C 1.38814 * 120.00172 * 354.73969 * 13 12 11 16 16 N 1.31613 * 119.99864 * 214.55737 * 15 13 12 17 17 Si 1.86803 * 119.99917 * 34.55965 * 15 13 12 18 18 H 1.48495 * 109.46890 * 54.23201 * 17 15 13 19 19 H 1.48492 * 109.47160 * 294.22700 * 17 15 13 20 20 H 1.48506 * 109.46914 * 174.22679 * 17 15 13 21 21 C 1.47416 * 108.70691 * 358.58045 * 12 11 10 22 22 C 1.46508 * 119.99857 * 270.00186 * 3 2 1 23 23 C 1.53007 * 117.49568 * 13.58926 * 22 3 2 24 24 C 1.52999 * 117.49693 * 304.96757 * 22 3 2 25 25 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46941 * 300.00119 * 1 2 3 27 27 H 1.08994 * 109.47070 * 60.00090 * 1 2 3 28 28 H 1.08995 * 109.46948 * 239.99533 * 2 1 3 29 29 H 1.09008 * 109.47187 * 119.99845 * 2 1 3 30 30 H 1.09003 * 109.47433 * 60.00299 * 6 4 3 31 31 H 1.08997 * 109.47630 * 299.99667 * 6 4 3 32 32 H 1.08998 * 110.72425 * 271.93864 * 10 8 7 33 33 H 1.09002 * 110.71746 * 35.21040 * 10 8 7 34 34 H 1.08991 * 109.99337 * 218.66922 * 11 10 8 35 35 H 1.09004 * 109.78029 * 97.49253 * 11 10 8 36 36 H 0.97009 * 120.00543 * 5.00348 * 16 15 13 37 37 H 1.08997 * 110.36612 * 143.19393 * 21 12 11 38 38 H 1.08998 * 110.37180 * 265.40951 * 21 12 11 39 39 H 1.09001 * 115.54949 * 159.29336 * 22 3 2 40 40 H 1.09000 * 117.50124 * 359.97438 * 23 22 3 41 41 H 1.08995 * 117.49530 * 145.02038 * 23 22 3 42 42 H 1.08997 * 117.49827 * 214.97108 * 24 22 3 43 43 H 1.08998 * 117.49988 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 1.1671 5 8 2.5591 3.1874 1.1691 6 6 2.1015 1.2721 2.4697 7 8 2.3896 2.1544 3.5563 8 6 2.2831 1.5443 4.8442 9 1 2.5628 0.4918 4.8005 10 6 3.1389 2.3041 5.8919 11 6 2.4122 2.0020 7.2196 12 7 1.0303 1.6278 6.8851 13 6 0.0627 1.2632 7.7830 14 1 -0.9481 1.0876 7.4460 15 6 0.3812 1.1194 9.1264 16 7 -0.2163 0.1960 9.8492 17 14 1.6579 2.2366 9.9084 18 1 1.2862 3.6547 9.6717 19 1 2.9879 1.9663 9.3058 20 1 1.7144 1.9770 11.3695 21 6 0.8569 1.7163 5.4239 22 6 2.2626 2.0718 -1.2688 23 6 1.6987 1.4339 -2.5402 24 6 3.2042 1.3989 -2.2695 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.7990 0.4347 2.4873 31 1 1.0822 0.8980 2.5655 32 1 4.1580 1.9178 5.9109 33 1 3.1351 3.3751 5.6894 34 1 2.4131 2.8877 7.8547 35 1 2.9065 1.1760 7.7310 36 1 -0.8250 -0.4311 9.4281 37 1 0.2049 0.9177 5.0702 38 1 0.4484 2.6886 5.1485 39 1 2.2787 3.1604 -1.2160 40 1 1.1465 0.5003 -2.4326 41 1 1.3437 2.1030 -3.3240 42 1 3.8396 2.0448 -2.8754 43 1 3.6424 0.4426 -1.9837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224309382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -8.297675 kcal Electronic energy + Delta-G solvation = -22565.690608 eV Core-core repulsion = 19227.663584 eV Total energy + Delta-G solvation = -3338.027024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41947 -38.60434 -37.53426 -35.99753 -34.75586 -32.42685 -30.65861 -29.71662 -28.45605 -27.38525 -23.98851 -23.74850 -22.80188 -22.29034 -20.95023 -20.27306 -19.25798 -17.84962 -17.41170 -16.91115 -16.55247 -16.04318 -15.32676 -14.96277 -14.53724 -14.27930 -14.14450 -13.87403 -13.46316 -13.32105 -13.14250 -12.90722 -12.43561 -12.26115 -12.20478 -11.92856 -11.85083 -11.60495 -11.41927 -11.34250 -11.10252 -10.97197 -10.89751 -10.38946 -10.03004 -9.83585 -9.67345 -9.38631 -9.02979 -8.79512 -8.30970 -7.10677 -6.38163 -3.12665 2.37524 2.39077 3.46525 3.47912 3.58632 3.71244 3.79277 4.28955 4.40979 4.48276 4.54792 4.63806 4.67808 4.80671 4.93383 5.00438 5.06770 5.10323 5.19773 5.22950 5.26100 5.28692 5.40905 5.47061 5.47430 5.55693 5.61471 5.66351 5.84061 5.86537 6.09318 6.22935 6.28015 6.41866 6.54281 6.59758 6.84895 7.01570 7.35751 7.72717 7.99707 8.33515 9.02047 9.60186 10.27130 11.09877 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036412 B = 0.003337 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.790257 B = 8388.905904 C = 8909.747606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.522 3.478 5 O -0.512 6.512 6 C 0.047 3.953 7 O -0.353 6.353 8 C 0.071 3.929 9 H 0.073 0.927 10 C -0.123 4.123 11 C 0.121 3.879 12 N -0.607 5.607 13 C -0.342 4.342 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.903 5.903 17 Si 1.031 2.969 18 H -0.296 1.296 19 H -0.276 1.276 20 H -0.298 1.298 21 C 0.119 3.881 22 C 0.084 3.916 23 C -0.188 4.188 24 C -0.194 4.194 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -2.445 -24.750 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 N -0.325 5.325 4 C 0.310 3.690 5 O -0.385 6.385 6 C -0.033 4.033 7 O -0.271 6.271 8 C 0.012 3.988 9 H 0.091 0.909 10 C -0.161 4.161 11 C -0.004 4.004 12 N -0.336 5.336 13 C -0.468 4.468 14 H 0.097 0.903 15 C -0.211 4.211 16 N -0.541 5.541 17 Si 0.863 3.137 18 H -0.224 1.224 19 H -0.203 1.203 20 H -0.225 1.225 21 C -0.008 4.008 22 C -0.020 4.020 23 C -0.226 4.226 24 C -0.232 4.232 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.153 0.847 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.713 -1.256 -23.219 24.202 hybrid contribution -0.987 -0.644 -1.514 1.919 sum 5.725 -1.901 -24.733 25.458 Atomic orbital electron populations 1.22283 0.95212 1.02750 1.03188 1.21653 0.95068 0.82135 1.03622 1.47387 1.66464 1.14154 1.04504 1.20393 0.76737 0.87334 0.84578 1.90718 1.45158 1.15819 1.86833 1.22231 1.01845 0.92930 0.86331 1.88007 1.90224 1.35849 1.13012 1.23481 0.97557 0.96358 0.81375 0.90904 1.22658 0.98191 1.01198 0.94007 1.21903 0.86489 0.97782 0.94185 1.44765 1.07568 1.80507 1.00772 1.19940 0.91176 1.45784 0.89935 0.90252 1.25588 1.02531 0.99608 0.93350 1.70935 1.29824 1.13442 1.39928 0.84496 0.76876 0.76971 0.75406 1.22375 1.20276 1.22528 1.21926 0.94019 0.98991 0.85822 1.21590 1.03513 0.97059 0.79829 1.23418 0.96688 1.03494 0.98999 1.23408 0.93055 1.03393 1.03388 0.91058 0.91899 0.91868 0.90009 0.89822 0.90402 0.90172 0.90891 0.90418 0.95272 0.93530 0.92582 0.93797 0.95146 0.84700 0.88074 0.87882 0.87990 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 10.06 37.16 0.37 -0.79 16 2 C 0.10 0.67 5.20 -4.05 -0.02 0.65 16 3 N -0.59 -5.93 2.82 -166.10 -0.47 -6.40 16 4 C 0.52 7.18 7.74 -10.99 -0.09 7.10 16 5 O -0.51 -9.27 16.14 -14.35 -0.23 -9.50 16 6 C 0.05 0.60 4.75 36.01 0.17 0.77 16 7 O -0.35 -6.08 9.69 -55.14 -0.53 -6.61 16 8 C 0.07 1.25 3.49 -24.58 -0.09 1.17 16 9 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 10 C -0.12 -2.24 6.68 -24.89 -0.17 -2.41 16 11 C 0.12 2.74 4.57 -3.05 -0.01 2.72 16 12 N -0.61 -15.38 3.38 -170.07 -0.57 -15.95 16 13 C -0.34 -9.94 10.39 -15.06 -0.16 -10.10 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C -0.01 -0.26 5.42 -17.43 -0.09 -0.35 16 16 N -0.90 -28.15 13.70 55.49 0.76 -27.39 16 17 Si 1.03 26.29 25.16 -169.99 -4.28 22.01 16 18 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.28 -6.37 5.05 56.52 0.29 -6.09 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 C 0.12 2.52 6.97 -2.53 -0.02 2.50 16 22 C 0.08 0.77 6.31 -67.92 -0.43 0.34 16 23 C -0.19 -1.17 9.51 -26.72 -0.25 -1.42 16 24 C -0.19 -1.32 10.02 -26.73 -0.27 -1.59 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 27 H 0.06 0.42 7.20 -51.93 -0.37 0.04 16 28 H 0.08 0.42 6.25 -51.93 -0.32 0.10 16 29 H 0.08 0.50 6.44 -51.92 -0.33 0.17 16 30 H 0.08 0.80 7.55 -51.93 -0.39 0.41 16 31 H 0.08 0.92 7.46 -51.93 -0.39 0.53 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.03 0.69 4.94 -51.93 -0.26 0.43 16 35 H 0.05 1.08 6.66 -51.93 -0.35 0.74 16 36 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.14 1.43 7.53 -51.93 -0.39 1.04 16 40 H 0.10 0.55 5.84 -51.93 -0.30 0.24 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.62 7.83 -51.93 -0.41 0.22 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -35.16 338.23 -8.25 -43.41 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.97 Total: -3.24 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.05 Total: -1.41 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.28 Total: -49.74 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.77 Total: -16.12 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -4.28 Total: 22.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.16 -8.25 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224309382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.108 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds