Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20756 * 120.00103 * 2 1 4 4 C 1.50697 * 119.99710 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46712 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46900 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47064 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99711 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.53081 * 109.43848 * 84.79387 * 10 9 7 12 12 C 1.53190 * 109.29209 * 181.23616 * 11 10 9 13 13 N 1.46921 * 108.89311 * 305.57883 * 12 11 10 14 14 C 1.36940 * 120.63187 * 233.51481 * 13 12 11 15 15 H 1.08001 * 120.00319 * 152.61971 * 14 13 12 16 16 C 1.38813 * 119.99903 * 332.62203 * 14 13 12 17 17 N 1.31624 * 120.00070 * 159.34992 * 16 14 13 18 18 Si 1.86800 * 120.00077 * 339.35529 * 16 14 13 19 19 H 1.48494 * 109.47321 * 92.87851 * 18 16 14 20 20 H 1.48501 * 109.47194 * 212.88430 * 18 16 14 21 21 H 1.48509 * 109.46983 * 332.87654 * 18 16 14 22 22 C 1.46923 * 118.74178 * 53.54201 * 13 12 11 23 23 C 1.53035 * 109.45960 * 204.99782 * 10 9 7 24 24 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46864 * 300.00100 * 1 2 3 26 26 H 1.08993 * 109.47113 * 59.99708 * 1 2 3 27 27 H 1.08997 * 109.47430 * 60.00007 * 4 2 1 28 28 H 1.09001 * 109.47450 * 299.99707 * 4 2 1 29 29 H 1.09006 * 109.47247 * 60.00524 * 5 4 2 30 30 H 1.09000 * 109.47553 * 299.99834 * 5 4 2 31 31 H 1.09006 * 109.46966 * 60.00581 * 6 5 4 32 32 H 1.09000 * 109.47147 * 300.00408 * 6 5 4 33 33 H 0.96998 * 120.00063 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46073 * 324.97324 * 10 9 7 35 35 H 1.08992 * 109.38800 * 61.36034 * 11 10 9 36 36 H 1.09002 * 109.61927 * 301.25313 * 11 10 9 37 37 H 1.08999 * 109.58729 * 185.71870 * 12 11 10 38 38 H 1.09004 * 109.58886 * 65.43758 * 12 11 10 39 39 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.59094 * 66.17180 * 22 13 12 41 41 H 1.09001 * 109.59077 * 186.46452 * 22 13 12 42 42 H 1.09002 * 109.49848 * 58.67960 * 23 10 9 43 43 H 1.09002 * 109.52425 * 298.59433 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0114 -2.0752 -0.0009 8 8 6.4157 -0.9317 -0.0014 9 7 6.8872 -3.0997 -0.0014 10 6 8.3275 -2.8320 -0.0018 11 6 8.8050 -2.6104 1.4356 12 6 10.3051 -2.3003 1.4286 13 7 11.0095 -3.3740 0.7146 14 6 12.0561 -4.0330 1.3025 15 1 12.2820 -5.0502 1.0181 16 6 12.8267 -3.3938 2.2640 17 7 13.5450 -4.1022 3.1093 18 14 12.8441 -1.5283 2.3582 19 1 11.8141 -1.0718 3.3255 20 1 14.1829 -1.0678 2.8064 21 1 12.5494 -0.9621 1.0173 22 6 10.5700 -3.7268 -0.6422 23 6 9.0675 -4.0245 -0.6120 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9971 -1.8763 -0.8908 28 1 1.9972 -1.8771 0.8892 29 1 4.0285 -0.4542 0.8890 30 1 4.0278 -0.4537 -0.8910 31 1 4.2662 -2.9223 -0.8909 32 1 4.2666 -2.9220 0.8891 33 1 6.5638 -4.0142 -0.0014 34 1 8.5306 -1.9381 -0.5916 35 1 8.6225 -3.5118 2.0205 36 1 8.2626 -1.7739 1.8766 37 1 10.6710 -2.2418 2.4536 38 1 10.4796 -1.3501 0.9236 39 1 14.0832 -3.6555 3.7815 40 1 10.7639 -2.8934 -1.3175 41 1 11.1124 -4.6082 -0.9844 42 1 8.7097 -4.1938 -1.6276 43 1 8.8849 -4.9139 -0.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226038515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = -69.564471 kcal Electronic energy + Delta-G solvation = -22080.214247 eV Core-core repulsion = 18739.530495 eV Total energy + Delta-G solvation = -3340.683751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03727 -39.57710 -37.67253 -34.71564 -34.35258 -32.19949 -31.15368 -30.40454 -30.16034 -28.09962 -24.99307 -22.97321 -22.79579 -21.59336 -20.23685 -19.91404 -19.47660 -17.18049 -16.68976 -16.40708 -16.19862 -15.77434 -15.27338 -15.17864 -14.85555 -14.20956 -14.00087 -13.75109 -13.61492 -13.20223 -12.98118 -12.87668 -12.58809 -12.44964 -12.16777 -12.10702 -11.87474 -11.76570 -11.68633 -11.05421 -11.01575 -10.83377 -10.59681 -10.15888 -10.06861 -10.00567 -9.91811 -9.56237 -9.48323 -8.79405 -8.59239 -6.98582 -5.94404 -3.30430 1.64555 2.74206 3.23438 3.36492 3.51950 3.56081 3.73814 4.46153 4.55193 4.65974 4.66404 4.78035 4.93919 4.94878 4.98030 5.13367 5.16487 5.22810 5.30138 5.31377 5.37588 5.44137 5.61534 5.67217 5.83091 5.87297 6.04139 6.10981 6.14575 6.16792 6.33456 6.43746 6.56965 6.65197 6.68660 6.77575 6.92726 7.20045 7.64241 7.96460 8.32837 8.35867 8.94111 9.72733 10.10298 11.21364 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.002989 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.098948 B = 9366.435026 C = 9826.579449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.140 4.140 7 C 0.507 3.493 8 O -0.539 6.539 9 N -0.727 5.727 10 C 0.150 3.850 11 C -0.140 4.140 12 C 0.128 3.872 13 N -0.607 5.607 14 C -0.261 4.261 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.882 3.118 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.151 3.849 23 C -0.140 4.140 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.961 0.441 -7.679 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.416 6.416 9 N -0.377 5.377 10 C 0.046 3.954 11 C -0.180 4.180 12 C 0.002 3.998 13 N -0.330 5.330 14 C -0.389 4.389 15 H 0.104 0.896 16 C -0.175 4.175 17 N -0.551 5.551 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.195 1.195 22 C 0.025 3.975 23 C -0.179 4.179 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.187 1.814 -7.557 26.358 hybrid contribution -0.195 0.401 0.249 0.511 sum -25.382 2.216 -7.308 26.506 Atomic orbital electron populations 1.22280 0.94646 1.04522 1.04746 1.24662 0.91865 0.90478 0.70483 1.90462 1.71868 1.35240 1.35129 1.22210 0.96692 0.97532 1.04630 1.21159 0.91480 0.96057 1.04914 1.21689 0.92250 0.99903 1.04219 1.20654 0.88586 0.85380 0.76111 1.90731 1.80345 1.21387 1.49118 1.46306 1.07208 1.09013 1.75182 1.20985 0.77813 0.99119 0.97499 1.22381 0.98407 1.01474 0.95765 1.21312 0.89869 0.91056 0.97564 1.44400 1.35689 1.41128 1.11824 1.18907 1.05124 0.96033 1.18812 0.89648 1.25277 0.97065 0.97585 0.97623 1.69837 1.32109 1.34996 1.18185 0.86972 0.75633 0.87950 0.78229 1.21578 1.23120 1.19481 1.20866 0.90919 0.98783 0.86973 1.22317 0.98554 0.97432 0.99635 0.90043 0.89124 0.89153 0.88304 0.88259 0.90571 0.90623 0.89018 0.88939 0.77028 0.90034 0.91701 0.92399 0.90751 0.95510 0.92767 0.95750 0.91366 0.92195 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.88 10.33 36.01 0.37 -0.51 16 2 C 0.35 2.75 7.27 -29.03 -0.21 2.53 16 3 O -0.45 -5.83 16.72 6.00 0.10 -5.73 16 4 C -0.17 -1.02 5.55 -27.88 -0.15 -1.17 16 5 C -0.10 -0.96 3.79 -26.73 -0.10 -1.06 16 6 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 7 C 0.51 6.83 7.79 -10.98 -0.09 6.74 16 8 O -0.54 -9.89 15.64 5.56 0.09 -9.81 16 9 N -0.73 -9.21 5.08 -53.74 -0.27 -9.48 16 10 C 0.15 2.43 2.41 -67.87 -0.16 2.27 16 11 C -0.14 -2.65 5.66 -26.59 -0.15 -2.80 16 12 C 0.13 2.92 4.20 -3.71 -0.02 2.90 16 13 N -0.61 -14.49 2.77 -172.32 -0.48 -14.97 16 14 C -0.26 -7.29 10.03 -15.06 -0.15 -7.44 16 15 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 17 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 18 Si 0.88 23.01 24.34 -169.99 -4.14 18.87 16 19 H -0.29 -7.33 6.62 56.52 0.37 -6.96 16 20 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 21 H -0.27 -6.98 6.64 56.52 0.38 -6.60 16 22 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 23 C -0.14 -2.15 5.55 -26.61 -0.15 -2.30 16 24 H 0.08 0.16 8.00 -51.93 -0.42 -0.26 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 30 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 3.72 8.60 -40.82 -0.35 3.37 16 34 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.85 4.50 -51.93 -0.23 1.62 16 38 H 0.03 0.62 7.07 -51.93 -0.37 0.26 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -35.93 344.65 -7.09 -43.01 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.27 Total: -1.17 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.08 Total: 1.32 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.02 Total: -51.69 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.19 Total: -15.54 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.14 Total: 18.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.93 -7.09 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226038515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.552 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds