Wall clock time and date at job start Tue Mar 31 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20756 * 120.00103 * 2 1 4 4 C 1.50697 * 119.99710 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46712 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46900 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47064 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99711 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.53081 * 109.43848 * 84.79387 * 10 9 7 12 12 C 1.53190 * 109.29209 * 181.23616 * 11 10 9 13 13 N 1.46921 * 108.89311 * 305.57883 * 12 11 10 14 14 C 1.36940 * 120.63187 * 233.51481 * 13 12 11 15 15 H 1.08001 * 120.00319 * 152.61971 * 14 13 12 16 16 C 1.38813 * 119.99903 * 332.62203 * 14 13 12 17 17 N 1.31624 * 120.00070 * 159.34992 * 16 14 13 18 18 Si 1.86800 * 120.00077 * 339.35529 * 16 14 13 19 19 H 1.48494 * 109.47321 * 92.87851 * 18 16 14 20 20 H 1.48501 * 109.47194 * 212.88430 * 18 16 14 21 21 H 1.48509 * 109.46983 * 332.87654 * 18 16 14 22 22 C 1.46923 * 118.74178 * 53.54201 * 13 12 11 23 23 C 1.53035 * 109.45960 * 204.99782 * 10 9 7 24 24 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46864 * 300.00100 * 1 2 3 26 26 H 1.08993 * 109.47113 * 59.99708 * 1 2 3 27 27 H 1.08997 * 109.47430 * 60.00007 * 4 2 1 28 28 H 1.09001 * 109.47450 * 299.99707 * 4 2 1 29 29 H 1.09006 * 109.47247 * 60.00524 * 5 4 2 30 30 H 1.09000 * 109.47553 * 299.99834 * 5 4 2 31 31 H 1.09006 * 109.46966 * 60.00581 * 6 5 4 32 32 H 1.09000 * 109.47147 * 300.00408 * 6 5 4 33 33 H 0.96998 * 120.00063 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46073 * 324.97324 * 10 9 7 35 35 H 1.08992 * 109.38800 * 61.36034 * 11 10 9 36 36 H 1.09002 * 109.61927 * 301.25313 * 11 10 9 37 37 H 1.08999 * 109.58729 * 185.71870 * 12 11 10 38 38 H 1.09004 * 109.58886 * 65.43758 * 12 11 10 39 39 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.59094 * 66.17180 * 22 13 12 41 41 H 1.09001 * 109.59077 * 186.46452 * 22 13 12 42 42 H 1.09002 * 109.49848 * 58.67960 * 23 10 9 43 43 H 1.09002 * 109.52425 * 298.59433 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0114 -2.0752 -0.0009 8 8 6.4157 -0.9317 -0.0014 9 7 6.8872 -3.0997 -0.0014 10 6 8.3275 -2.8320 -0.0018 11 6 8.8050 -2.6104 1.4356 12 6 10.3051 -2.3003 1.4286 13 7 11.0095 -3.3740 0.7146 14 6 12.0561 -4.0330 1.3025 15 1 12.2820 -5.0502 1.0181 16 6 12.8267 -3.3938 2.2640 17 7 13.5450 -4.1022 3.1093 18 14 12.8441 -1.5283 2.3582 19 1 11.8141 -1.0718 3.3255 20 1 14.1829 -1.0678 2.8064 21 1 12.5494 -0.9621 1.0173 22 6 10.5700 -3.7268 -0.6422 23 6 9.0675 -4.0245 -0.6120 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9971 -1.8763 -0.8908 28 1 1.9972 -1.8771 0.8892 29 1 4.0285 -0.4542 0.8890 30 1 4.0278 -0.4537 -0.8910 31 1 4.2662 -2.9223 -0.8909 32 1 4.2666 -2.9220 0.8891 33 1 6.5638 -4.0142 -0.0014 34 1 8.5306 -1.9381 -0.5916 35 1 8.6225 -3.5118 2.0205 36 1 8.2626 -1.7739 1.8766 37 1 10.6710 -2.2418 2.4536 38 1 10.4796 -1.3501 0.9236 39 1 14.0832 -3.6555 3.7815 40 1 10.7639 -2.8934 -1.3175 41 1 11.1124 -4.6082 -0.9844 42 1 8.7097 -4.1938 -1.6276 43 1 8.8849 -4.9139 -0.0089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226038515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:43 Heat of formation + Delta-G solvation = -96.208491 kcal Electronic energy + Delta-G solvation = -22081.369618 eV Core-core repulsion = 18739.530495 eV Total energy + Delta-G solvation = -3341.839123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07335 -40.39247 -39.19546 -36.12129 -35.21727 -34.06629 -32.10293 -31.98699 -31.39044 -28.82534 -26.71846 -24.48326 -24.11425 -22.90523 -21.43755 -20.90381 -20.44911 -18.91350 -17.94161 -17.60063 -17.06383 -16.86699 -16.34506 -16.13665 -15.97818 -15.81343 -15.37883 -15.16277 -14.85290 -14.52227 -14.46478 -14.14138 -13.88258 -13.49459 -13.28784 -13.10811 -12.78282 -12.71352 -12.65324 -12.56784 -12.37367 -12.24464 -12.06729 -11.78676 -11.70301 -11.50877 -11.46665 -10.94294 -10.74816 -10.48830 -10.00707 -8.99310 -8.19945 -5.50819 1.08280 1.25865 1.36606 1.44864 1.71656 2.23414 2.37483 3.01493 3.22408 3.31358 3.72230 3.82064 3.92929 4.09009 4.10636 4.18207 4.22196 4.29151 4.43799 4.53363 4.58315 4.65760 4.67598 4.74160 4.74938 4.81532 4.85560 4.91085 4.94784 5.01619 5.07006 5.13604 5.19176 5.25936 5.38344 5.42113 5.56849 5.84619 6.10654 6.65830 6.67713 6.87808 7.37230 7.58671 8.00503 8.99583 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.002989 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.098948 B = 9366.435026 C = 9826.579449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.346 3.654 3 O -0.520 6.520 4 C -0.166 4.166 5 C -0.099 4.099 6 C -0.126 4.126 7 C 0.499 3.501 8 O -0.596 6.596 9 N -0.711 5.711 10 C 0.157 3.843 11 C -0.129 4.129 12 C 0.125 3.875 13 N -0.619 5.619 14 C -0.243 4.243 15 H 0.064 0.936 16 C -0.031 4.031 17 N -0.952 5.952 18 Si 0.936 3.064 19 H -0.282 1.282 20 H -0.308 1.308 21 H -0.268 1.268 22 C 0.141 3.859 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.418 0.582 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.463 -1.240 -8.998 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.226 3.774 3 O -0.398 6.398 4 C -0.202 4.202 5 C -0.137 4.137 6 C -0.165 4.165 7 C 0.288 3.712 8 O -0.477 6.477 9 N -0.363 5.363 10 C 0.052 3.948 11 C -0.169 4.169 12 C -0.001 4.001 13 N -0.344 5.344 14 C -0.372 4.372 15 H 0.081 0.919 16 C -0.226 4.226 17 N -0.599 5.599 18 Si 0.766 3.234 19 H -0.210 1.210 20 H -0.237 1.237 21 H -0.193 1.193 22 C 0.016 3.984 23 C -0.162 4.162 24 H 0.133 0.867 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.763 0.085 -8.912 30.112 hybrid contribution 0.846 0.877 0.597 1.357 sum -27.916 0.962 -8.315 29.144 Atomic orbital electron populations 1.22300 0.91719 1.06815 1.04837 1.25471 0.93721 0.90318 0.67883 1.90458 1.73359 1.37486 1.38478 1.22266 0.93148 0.97049 1.07760 1.21087 0.94829 0.96196 1.01605 1.21725 0.87612 0.99616 1.07592 1.21660 0.90756 0.84414 0.74411 1.90722 1.81544 1.23841 1.51575 1.46051 1.05426 1.10244 1.74602 1.20647 0.80222 0.98837 0.95108 1.22211 0.95439 1.01267 0.97996 1.21258 0.92340 0.90604 0.95906 1.44540 1.35026 1.41020 1.13802 1.18918 1.05334 0.95282 1.17694 0.91851 1.25805 0.97760 1.00858 0.98165 1.69936 1.34050 1.36320 1.19549 0.86085 0.75245 0.83833 0.78249 1.20953 1.23661 1.19259 1.21129 0.93733 0.99034 0.84472 1.22129 0.95217 0.96884 1.01963 0.86650 0.89040 0.88907 0.84709 0.85013 0.94314 0.93888 0.85047 0.85639 0.74497 0.92131 0.91419 0.92899 0.93238 0.96107 0.92953 0.95214 0.91063 0.88412 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.33 71.24 0.74 -0.44 16 2 C 0.35 4.94 7.27 29.10 0.21 5.15 16 3 O -0.52 -13.91 16.72 -1.44 -0.02 -13.93 16 4 C -0.17 -1.35 5.55 29.85 0.17 -1.19 16 5 C -0.10 -1.80 3.79 30.60 0.12 -1.68 16 6 C -0.13 -1.62 5.70 29.85 0.17 -1.45 16 7 C 0.50 12.37 7.79 87.66 0.68 13.05 16 8 O -0.60 -21.99 15.64 -3.04 -0.05 -22.04 16 9 N -0.71 -15.68 5.08 -442.34 -2.25 -17.92 16 10 C 0.16 4.77 2.41 45.03 0.11 4.88 16 11 C -0.13 -4.75 5.66 30.68 0.17 -4.57 16 12 C 0.12 5.66 4.20 86.36 0.36 6.02 16 13 N -0.62 -29.28 2.77 -699.09 -1.94 -31.22 16 14 C -0.24 -13.71 10.03 84.03 0.84 -12.87 16 15 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 16 C -0.03 -1.83 5.23 84.86 0.44 -1.39 16 17 N -0.95 -60.20 13.97 21.65 0.30 -59.90 16 18 Si 0.94 48.69 24.34 68.60 1.67 50.36 16 19 H -0.28 -14.24 6.62 99.48 0.66 -13.58 16 20 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 21 H -0.27 -13.64 6.64 99.48 0.66 -12.98 16 22 C 0.14 5.20 6.52 86.37 0.56 5.77 16 23 C -0.12 -3.37 5.55 30.67 0.17 -3.20 16 24 H 0.11 -0.11 8.00 -2.39 -0.02 -0.12 16 25 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.04 0.97 8.06 -2.38 -0.02 0.96 16 30 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 31 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 5.80 8.60 -92.71 -0.80 5.00 16 34 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.48 4.50 -2.39 -0.01 2.47 16 38 H 0.02 0.97 7.07 -2.38 -0.02 0.96 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 42 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -84.72 344.65 2.56 -82.15 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.10 Total: 4.42 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 4.75 Total: 8.09 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.88 Total: -109.04 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.07 Total: -35.97 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.67 Total: 50.36 kcal Total: -84.72 2.56 -82.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226038515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.055 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds