Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99769 * 2 1 4 4 O 1.42900 * 109.47129 * 134.99767 * 3 2 1 5 5 C 1.42898 * 114.00330 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47153 * 29.99749 * 5 4 3 7 7 C 1.52997 * 109.46928 * 269.99952 * 5 4 3 8 8 C 1.50703 * 109.47352 * 149.99588 * 5 4 3 9 9 O 1.21281 * 119.99718 * 5.00185 * 8 5 4 10 10 N 1.34770 * 120.00104 * 185.00206 * 8 5 4 11 11 C 1.46500 * 120.00090 * 180.02562 * 10 8 5 12 12 C 1.53041 * 109.45870 * 204.99554 * 11 10 8 13 13 C 1.53197 * 109.31035 * 178.61223 * 12 11 10 14 14 N 1.46921 * 108.89220 * 54.56963 * 13 12 11 15 15 C 1.36934 * 120.63409 * 126.46494 * 14 13 12 16 16 H 1.08000 * 119.99464 * 331.92132 * 15 14 13 17 17 C 1.38810 * 120.00385 * 151.92408 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17004 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.17171 * 17 15 14 20 20 H 1.48499 * 109.47320 * 89.99982 * 19 17 15 21 21 H 1.48500 * 109.47299 * 209.99808 * 19 17 15 22 22 H 1.48507 * 109.47261 * 329.99989 * 19 17 15 23 23 C 1.46963 * 118.71124 * 306.63494 * 14 13 12 24 24 C 1.53042 * 109.46253 * 84.93146 * 11 10 8 25 25 H 1.07997 * 119.99979 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00017 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00435 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47385 * 14.99627 * 3 2 1 29 29 H 1.08996 * 109.46875 * 254.99319 * 3 2 1 30 30 H 1.08994 * 109.47351 * 59.99948 * 7 5 4 31 31 H 1.09001 * 109.47007 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47279 * 299.99467 * 7 5 4 33 33 H 0.97004 * 119.99852 * 359.97438 * 10 8 5 34 34 H 1.08996 * 109.46112 * 324.96788 * 11 10 8 35 35 H 1.09005 * 109.49645 * 58.66588 * 12 11 10 36 36 H 1.08998 * 109.50347 * 298.56326 * 12 11 10 37 37 H 1.09000 * 109.58445 * 174.42964 * 13 12 11 38 38 H 1.09004 * 109.58739 * 294.70519 * 13 12 11 39 39 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47297 * 293.57143 * 23 14 13 41 41 H 1.09005 * 109.70555 * 173.29008 * 23 14 13 42 42 H 1.09004 * 109.49452 * 301.34025 * 24 11 10 43 43 H 1.08996 * 109.50041 * 61.43208 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0321 6 1 3.2845 3.2948 0.7881 7 6 5.0706 2.3503 0.0407 8 6 4.4505 2.5884 2.4299 9 8 4.2693 1.7134 3.2499 10 7 5.1367 3.6978 2.7685 11 6 5.6642 3.8467 4.1271 12 6 5.8252 5.3336 4.4514 13 6 6.3441 5.4862 5.8847 14 7 7.5767 4.7001 6.0307 15 6 8.7230 5.2811 6.5035 16 1 8.8955 6.3365 6.3520 17 6 9.6632 4.5138 7.1773 18 7 9.3298 3.3329 7.6534 19 14 11.4016 5.1572 7.4082 20 1 11.4815 5.9226 8.6783 21 1 12.3496 4.0152 7.4581 22 1 11.7558 6.0453 6.2720 23 6 7.5564 3.2792 5.6559 24 6 7.0240 3.1513 4.2252 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3855 2.1162 0.2659 29 1 2.4756 1.4868 -0.9926 30 1 4.6784 2.2395 -0.9702 31 1 5.6666 3.2610 0.1009 32 1 5.6945 1.4906 0.2848 33 1 5.2819 4.3974 2.1125 34 1 4.9725 3.3930 4.8370 35 1 4.8606 5.8327 4.3587 36 1 6.5359 5.7825 3.7576 37 1 6.5543 6.5364 6.0874 38 1 5.5932 5.1221 6.5860 39 1 9.9867 2.7969 8.1246 40 1 6.9055 2.7327 6.3383 41 1 8.5657 2.8709 5.7080 42 1 6.9127 2.0972 3.9712 43 1 7.7234 3.6207 3.5334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230407846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -44.699786 kcal Electronic energy + Delta-G solvation = -22444.988814 eV Core-core repulsion = 19105.383276 eV Total energy + Delta-G solvation = -3339.605538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00087 -38.25582 -37.07757 -34.41057 -34.29263 -32.38801 -31.23391 -29.97658 -29.27131 -26.51592 -25.29103 -23.91975 -22.24141 -21.82369 -20.49013 -19.99570 -19.26865 -17.35865 -17.27229 -16.60041 -15.89964 -15.68186 -15.19180 -14.70388 -14.49690 -14.07677 -13.73151 -13.49457 -13.27148 -13.13541 -12.99423 -12.75425 -12.49825 -12.37107 -12.35010 -11.68885 -11.48549 -11.20271 -11.10896 -10.92642 -10.70887 -10.38225 -10.27202 -10.23966 -10.05620 -9.80600 -9.74935 -9.63303 -9.24835 -8.70066 -8.41396 -6.67062 -5.77473 -3.20615 1.84102 2.77186 2.97868 3.38109 3.45128 3.47029 3.85180 4.50172 4.53651 4.67535 4.74748 4.84284 4.87339 5.01595 5.19299 5.29226 5.34977 5.40821 5.45938 5.47717 5.56228 5.64224 5.83128 5.88368 6.08753 6.24199 6.26176 6.33177 6.35608 6.44025 6.61349 6.65813 6.77690 6.84315 6.93690 6.98290 7.38966 7.68360 7.73256 7.80405 8.42738 8.46319 9.21936 9.85321 10.42267 11.31230 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038522 B = 0.003052 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.684268 B = 9172.148093 C = 9230.314731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.083 0.917 7 C -0.170 4.170 8 C 0.510 3.490 9 O -0.518 6.518 10 N -0.723 5.723 11 C 0.152 3.848 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.394 0.606 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -0.185 -17.984 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.101 0.899 7 C -0.228 4.228 8 C 0.294 3.706 9 O -0.392 6.392 10 N -0.375 5.375 11 C 0.049 3.951 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.187 4.187 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.458 -1.116 -17.146 21.825 hybrid contribution 0.917 0.786 -0.411 1.276 sum -12.541 -0.330 -17.556 21.578 Atomic orbital electron populations 1.23828 0.95522 1.02272 1.00221 1.22720 0.95629 0.98198 1.00049 1.21657 0.88788 0.96164 0.92508 1.88103 1.44054 1.34726 1.60139 1.21936 0.93877 0.89363 0.93930 0.89907 1.22227 0.98011 1.03848 0.98687 1.20273 0.78815 0.82547 0.88997 1.90740 1.56997 1.40161 1.51291 1.46264 1.56071 1.20357 1.14823 1.21058 0.95900 0.96713 0.81474 1.22336 1.00117 0.94123 1.01233 1.20833 0.89394 0.96156 0.91500 1.44096 1.06276 1.06763 1.74406 1.19149 0.95306 0.94410 1.29562 0.91694 1.25071 0.99580 0.97523 0.97468 1.70036 1.33325 1.12501 1.38633 0.86309 0.84711 0.77828 0.77973 1.21385 1.21559 1.20524 1.20757 1.01259 0.84996 0.88263 1.22559 0.95113 0.98993 1.01989 0.87736 0.88461 0.86419 0.92702 0.92209 0.91451 0.90800 0.90884 0.77298 0.90014 0.92633 0.91838 0.92349 0.96207 0.93562 0.96132 0.89276 0.92816 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 14.31 29.01 0.42 -0.96 16 2 C -0.15 -1.35 9.89 -36.02 -0.36 -1.71 16 3 C 0.09 0.79 6.16 36.01 0.22 1.01 16 4 O -0.35 -4.67 9.51 -55.09 -0.52 -5.19 16 5 C 0.07 0.80 3.13 -27.88 -0.09 0.71 16 6 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 7 C -0.17 -1.54 9.48 37.16 0.35 -1.18 16 8 C 0.51 7.87 7.14 -10.99 -0.08 7.79 16 9 O -0.52 -10.67 16.17 -14.30 -0.23 -10.90 16 10 N -0.72 -10.06 5.04 -53.77 -0.27 -10.33 16 11 C 0.15 2.66 2.42 -67.89 -0.16 2.49 16 12 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 13 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 14 N -0.59 -14.86 3.00 -172.29 -0.52 -15.37 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -26.51 11.20 55.49 0.62 -25.89 16 19 Si 0.90 21.68 29.59 -169.99 -5.03 16.66 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.17 4.27 5.30 -3.69 -0.02 4.25 16 24 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 25 H 0.10 0.66 8.06 -52.49 -0.42 0.23 16 26 H 0.10 0.63 7.90 -52.49 -0.41 0.22 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 29 H 0.06 0.43 7.87 -51.93 -0.41 0.03 16 30 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 31 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.39 4.10 8.39 -40.82 -0.34 3.76 16 34 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -33.48 352.29 -8.18 -41.66 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.27 Total: 1.26 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.27 Total: 2.80 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.17 Total: -51.60 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.76 Total: -16.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.48 -8.18 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230407846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.035 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds