Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99601 * 2 1 4 4 O 1.42899 * 109.47366 * 135.00286 * 3 2 1 5 5 C 1.42902 * 114.00256 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46663 * 329.99548 * 5 4 3 7 7 C 1.53001 * 109.47208 * 89.99552 * 5 4 3 8 8 C 1.50697 * 109.47063 * 209.99974 * 5 4 3 9 9 O 1.21279 * 120.00157 * 354.99766 * 8 5 4 10 10 N 1.34779 * 120.00272 * 174.99832 * 8 5 4 11 11 C 1.46494 * 120.00348 * 179.72082 * 10 8 5 12 12 C 1.53039 * 109.46094 * 275.34775 * 11 10 8 13 13 C 1.53196 * 109.31399 * 178.61521 * 12 11 10 14 14 N 1.46923 * 108.77363 * 54.63015 * 13 12 11 15 15 C 1.36939 * 120.63268 * 126.41750 * 14 13 12 16 16 H 1.08001 * 119.99543 * 332.60956 * 15 14 13 17 17 C 1.38808 * 120.00432 * 152.60122 * 15 14 13 18 18 N 1.31626 * 120.00027 * 159.34299 * 17 15 14 19 19 Si 1.86800 * 120.00028 * 339.35059 * 17 15 14 20 20 H 1.48503 * 109.47058 * 92.94006 * 19 17 15 21 21 H 1.48497 * 109.47130 * 212.93676 * 19 17 15 22 22 H 1.48494 * 109.47169 * 332.93933 * 19 17 15 23 23 C 1.46928 * 118.74245 * 306.38975 * 14 13 12 24 24 C 1.53037 * 109.46002 * 155.27409 * 11 10 8 25 25 H 1.08001 * 119.99367 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00379 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47594 * 14.99688 * 3 2 1 29 29 H 1.09008 * 109.46762 * 255.00242 * 3 2 1 30 30 H 1.08999 * 109.46854 * 180.02562 * 7 5 4 31 31 H 1.08996 * 109.46946 * 299.99977 * 7 5 4 32 32 H 1.09001 * 109.46887 * 60.00379 * 7 5 4 33 33 H 0.97005 * 119.99200 * 359.97438 * 10 8 5 34 34 H 1.09003 * 109.46043 * 35.30291 * 11 10 8 35 35 H 1.09003 * 109.49248 * 298.56357 * 12 11 10 36 36 H 1.08995 * 109.49804 * 58.65777 * 12 11 10 37 37 H 1.08999 * 109.58293 * 294.84643 * 13 12 11 38 38 H 1.08995 * 109.70646 * 174.48826 * 13 12 11 39 39 H 0.96993 * 119.99762 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.58922 * 293.82451 * 23 14 13 41 41 H 1.09001 * 109.70671 * 173.46651 * 23 14 13 42 42 H 1.08998 * 109.49819 * 301.34110 * 24 11 10 43 43 H 1.09000 * 109.49449 * 61.40615 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9083 2.4351 1.0320 6 1 3.9136 2.9311 0.0613 7 6 3.3041 3.3717 2.0801 8 6 5.3205 2.0856 1.4251 9 8 5.6060 0.9409 1.7064 10 7 6.2663 3.0450 1.4639 11 6 7.6378 2.7063 1.8520 12 6 7.7549 2.7235 3.3778 13 6 9.1810 2.3353 3.7808 14 7 10.1258 3.2257 3.0929 15 6 11.0685 3.9231 3.8001 16 1 10.8823 4.1909 4.8297 17 6 12.2634 4.2857 3.1938 18 7 12.9816 5.2701 3.6914 19 14 12.8519 3.3768 1.6717 20 1 12.3793 4.0881 0.4568 21 1 14.3359 3.3249 1.6690 22 1 12.3082 1.9950 1.6792 23 6 10.0404 3.3531 1.6317 24 6 8.6047 3.7300 1.2527 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3854 2.1161 0.2659 29 1 2.4754 1.4868 -0.9928 30 1 3.9001 4.2823 2.1403 31 1 2.2827 3.6245 1.7957 32 1 3.2989 2.8756 3.0507 33 1 6.0380 3.9604 1.2385 34 1 7.8853 1.7120 1.4802 35 1 7.5317 3.7240 3.7485 36 1 7.0494 2.0110 3.8049 37 1 9.3744 1.3027 3.4904 38 1 9.2995 2.4398 4.8593 39 1 13.8164 5.5237 3.2675 40 1 10.3040 2.4035 1.1660 41 1 10.7244 4.1299 1.2899 42 1 8.5039 3.7337 0.1674 43 1 8.3731 4.7210 1.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230407847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -39.126939 kcal Electronic energy + Delta-G solvation = -22490.714143 eV Core-core repulsion = 19151.350262 eV Total energy + Delta-G solvation = -3339.363881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13553 -38.41713 -37.34456 -34.58545 -34.35811 -32.43705 -31.41427 -30.42561 -29.77323 -26.55685 -25.35852 -23.90590 -22.90859 -21.79281 -20.57975 -20.11081 -19.59859 -17.47928 -17.40984 -16.58726 -16.18157 -15.67892 -15.25837 -15.01289 -14.73793 -14.16467 -13.95899 -13.77569 -13.58632 -13.12170 -13.08671 -12.98023 -12.65619 -12.40472 -12.34011 -11.99961 -11.80841 -11.75336 -11.24462 -10.99686 -10.83174 -10.56362 -10.43975 -10.28600 -10.14047 -9.84710 -9.70691 -9.51242 -9.42246 -8.83334 -8.63678 -6.99870 -5.95769 -3.31600 1.77174 2.64363 2.87256 3.30263 3.48618 3.52148 3.74995 4.45673 4.52086 4.62803 4.66514 4.71051 4.82905 4.95063 4.99136 5.10516 5.15838 5.27654 5.32926 5.38128 5.40239 5.51503 5.65933 5.80645 5.81424 6.03181 6.08811 6.15800 6.20781 6.26406 6.32286 6.39790 6.56624 6.63956 6.64848 6.70078 6.82968 6.92276 7.58273 7.95265 8.29034 8.32210 8.93073 9.71066 10.08728 11.20203 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043264 B = 0.003150 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.029532 B = 8887.644889 C = 9031.246793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.070 3.930 6 H 0.084 0.916 7 C -0.170 4.170 8 C 0.511 3.489 9 O -0.520 6.520 10 N -0.722 5.722 11 C 0.152 3.848 12 C -0.141 4.141 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.140 4.140 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.396 0.604 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.997 -3.484 -8.832 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.009 3.991 6 H 0.102 0.898 7 C -0.228 4.228 8 C 0.296 3.704 9 O -0.394 6.394 10 N -0.375 5.375 11 C 0.048 3.952 12 C -0.181 4.181 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.230 0.770 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.583 -4.409 -8.490 24.526 hybrid contribution 0.225 0.297 -1.192 1.249 sum -22.358 -4.113 -9.682 24.709 Atomic orbital electron populations 1.23827 0.95481 1.02261 1.00339 1.22744 0.95593 0.98290 0.99932 1.21665 0.89031 0.96111 0.92333 1.88094 1.43814 1.35172 1.59978 1.21933 0.89939 0.87248 1.00009 0.89788 1.22226 1.01575 0.98996 0.99956 1.20300 0.86218 0.85808 0.78105 1.90726 1.81548 1.19968 1.47162 1.46220 1.10173 1.11199 1.69873 1.21005 0.78988 0.99708 0.95463 1.22380 0.99385 1.01731 0.94638 1.20898 0.87203 0.92502 0.96990 1.44409 1.37026 1.50162 1.01413 1.18932 0.93984 1.27757 0.98016 0.89621 1.25289 0.96352 0.97924 0.98096 1.69837 1.15894 1.27172 1.42247 0.86972 0.77058 0.81617 0.83159 1.21649 1.23113 1.19473 1.21304 0.93661 0.99132 0.85634 1.22344 0.97361 0.99015 0.99241 0.87738 0.88462 0.86360 0.92606 0.92188 0.90740 0.91402 0.90911 0.76995 0.89892 0.91794 0.92218 0.95686 0.91545 0.92774 0.95471 0.90481 0.92247 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 14.31 29.01 0.42 -0.80 16 2 C -0.15 -1.26 9.89 -36.03 -0.36 -1.62 16 3 C 0.08 0.74 6.16 36.01 0.22 0.96 16 4 O -0.35 -4.36 9.51 -55.09 -0.52 -4.89 16 5 C 0.07 0.73 3.13 -27.88 -0.09 0.64 16 6 H 0.08 0.64 7.79 -51.92 -0.40 0.24 16 7 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 8 C 0.51 7.24 7.14 -10.99 -0.08 7.17 16 9 O -0.52 -9.84 16.17 -14.30 -0.23 -10.07 16 10 N -0.72 -9.23 5.04 -53.77 -0.27 -9.50 16 11 C 0.15 2.44 2.41 -67.89 -0.16 2.28 16 12 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 13 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 14 N -0.61 -14.33 2.77 -172.32 -0.48 -14.81 16 15 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 19 Si 0.88 22.26 24.35 -169.99 -4.14 18.12 16 20 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.27 -6.76 6.63 56.52 0.37 -6.38 16 23 C 0.13 2.76 4.20 -3.71 -0.02 2.74 16 24 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 25 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 26 H 0.10 0.53 7.90 -52.49 -0.41 0.12 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.06 0.38 7.59 -51.93 -0.39 -0.01 16 29 H 0.06 0.45 8.09 -51.92 -0.42 0.03 16 30 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 31 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 3.81 8.39 -40.82 -0.34 3.47 16 34 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 41 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -33.81 345.83 -7.13 -40.94 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.20 Total: 0.39 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.28 Total: 1.51 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.03 Total: -51.21 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.76 Total: -14.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.81 -7.13 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230407847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.815 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds