Wall clock time and date at job start Tue Mar 31 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.20765 * 119.99946 * 2 1 4 4 C 1.50702 * 120.00532 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47289 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47106 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47378 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99550 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00348 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99621 * 0.02562 * 9 7 6 11 11 C 1.46498 * 120.00351 * 180.02562 * 9 7 6 12 12 C 1.53004 * 109.46933 * 264.36694 * 11 9 7 13 13 H 1.08991 * 112.78006 * 316.23261 * 12 11 9 14 14 C 1.53754 * 113.55238 * 87.09230 * 12 11 9 15 15 C 1.53496 * 83.25808 * 140.98316 * 14 12 11 16 16 N 1.47069 * 87.98784 * 333.76422 * 15 14 12 17 17 C 1.36934 * 136.05813 * 207.08833 * 16 15 14 18 18 H 1.08009 * 119.99607 * 172.13701 * 17 16 15 19 19 C 1.38807 * 120.00007 * 351.85766 * 17 16 15 20 20 N 1.31613 * 120.00127 * 0.27757 * 19 17 16 21 21 Si 1.86802 * 119.99886 * 180.27667 * 19 17 16 22 22 H 1.48501 * 109.47329 * 60.00159 * 21 19 17 23 23 H 1.48497 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47295 * 300.00334 * 21 19 17 25 25 H 1.09003 * 109.47087 * 239.99741 * 1 2 3 26 26 H 1.08998 * 109.47384 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47238 * 120.00236 * 1 2 3 28 28 H 1.08998 * 109.47326 * 59.99664 * 4 2 1 29 29 H 1.09005 * 109.46994 * 299.99699 * 4 2 1 30 30 H 1.08998 * 109.47205 * 59.99596 * 5 4 2 31 31 H 1.09005 * 109.46862 * 299.99787 * 5 4 2 32 32 H 1.09003 * 109.46841 * 59.99928 * 6 5 4 33 33 H 1.08997 * 109.47021 * 300.00046 * 6 5 4 34 34 H 1.09003 * 109.46576 * 270.21896 * 10 9 7 35 35 H 1.08998 * 109.47217 * 30.21266 * 10 9 7 36 36 H 1.08998 * 109.47183 * 150.22079 * 10 9 7 37 37 H 1.08993 * 109.47200 * 144.36309 * 11 9 7 38 38 H 1.09004 * 109.47038 * 24.36247 * 11 9 7 39 39 H 1.09002 * 114.39426 * 27.42443 * 14 12 11 40 40 H 1.08999 * 114.26870 * 254.53490 * 14 12 11 41 41 H 1.09002 * 113.46916 * 218.98183 * 15 14 12 42 42 H 1.09005 * 113.52179 * 88.54961 * 15 14 12 43 43 H 0.97005 * 120.00306 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 6 4.5299 -2.3504 -0.0011 7 6 6.0114 -2.0750 -0.0022 8 8 6.4156 -0.9315 -0.0025 9 7 6.8873 -3.0993 -0.0018 10 6 6.3990 -4.4805 -0.0009 11 6 8.3276 -2.8316 -0.0024 12 6 8.8545 -2.8784 -1.4381 13 1 8.4579 -3.7200 -2.0059 14 6 8.7442 -1.5347 -2.1772 15 6 10.1129 -1.9392 -2.7420 16 7 10.3164 -2.7470 -1.5300 17 6 11.3934 -3.1877 -0.8081 18 1 11.2422 -3.6794 0.1416 19 6 12.6790 -3.0077 -1.2996 20 7 12.8632 -2.4086 -2.4569 21 14 14.1476 -3.6159 -0.3185 22 1 14.0399 -5.0843 -0.1249 23 1 15.3986 -3.3048 -1.0558 24 1 14.1720 -2.9427 1.0049 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8900 28 1 1.9972 -1.8763 -0.8908 29 1 1.9973 -1.8770 0.8892 30 1 4.0284 -0.4539 0.8888 31 1 4.0277 -0.4536 -0.8911 32 1 4.2663 -2.9221 -0.8909 33 1 4.2668 -2.9217 0.8891 34 1 6.2745 -4.8211 1.0271 35 1 5.4405 -4.5274 -0.5177 36 1 7.1187 -5.1207 -0.5111 37 1 8.8376 -3.5859 0.5966 38 1 8.5139 -1.8445 0.4209 39 1 8.7697 -0.6600 -1.5273 40 1 7.9477 -1.4962 -2.9203 41 1 10.8097 -1.1056 -2.8301 42 1 10.0491 -2.5331 -3.6538 43 1 13.7616 -2.2824 -2.8002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230759317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:46 Heat of formation + Delta-G solvation = -23.978619 kcal Electronic energy + Delta-G solvation = -22164.167418 eV Core-core repulsion = 18825.460417 eV Total energy + Delta-G solvation = -3338.707001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97914 -39.50419 -37.87569 -35.19450 -34.41791 -32.15791 -31.08395 -29.17390 -27.83512 -27.57821 -26.09578 -23.36383 -23.01541 -21.53173 -19.85604 -19.12962 -18.81751 -16.97491 -16.59178 -16.30664 -16.19650 -15.61477 -15.41498 -15.04222 -14.73482 -14.29674 -13.89760 -13.48179 -13.35305 -12.97166 -12.82170 -12.65034 -12.48968 -12.20260 -12.13997 -12.05083 -11.83252 -11.48880 -11.40919 -11.03271 -10.92025 -10.78623 -10.71713 -10.37641 -9.93678 -9.81492 -9.75418 -9.55692 -9.29515 -8.74418 -8.21175 -6.80997 -5.73215 -3.05251 1.71770 2.87730 3.20594 3.41543 3.45424 3.47050 3.78429 4.46359 4.51604 4.68394 4.74804 4.87580 4.94789 4.99174 5.10510 5.21624 5.27095 5.30835 5.36456 5.41144 5.45135 5.52501 5.65960 5.71513 5.72395 5.96170 5.98165 6.07576 6.15262 6.24133 6.47333 6.59163 6.73362 6.83375 6.90055 7.27192 7.31279 7.52307 7.63073 7.66664 8.02522 8.45237 9.07405 9.74492 10.71621 11.45177 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.002984 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.087470 B = 9382.532680 C = 9703.541644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.348 3.652 3 O -0.451 6.451 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.138 4.138 7 C 0.507 3.493 8 O -0.531 6.531 9 N -0.613 5.613 10 C 0.079 3.921 11 C 0.114 3.886 12 C 0.130 3.870 13 H 0.039 0.961 14 C -0.157 4.157 15 C 0.158 3.842 16 N -0.601 5.601 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.080 -3.593 4.605 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.223 3.777 3 O -0.324 6.324 4 C -0.210 4.210 5 C -0.136 4.136 6 C -0.178 4.178 7 C 0.294 3.706 8 O -0.407 6.407 9 N -0.347 5.347 10 C -0.065 4.065 11 C -0.009 4.009 12 C 0.022 3.978 13 H 0.056 0.944 14 C -0.196 4.196 15 C 0.032 3.968 16 N -0.327 5.327 17 C -0.346 4.346 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.136 -2.475 4.672 24.708 hybrid contribution 0.791 -0.896 0.350 1.246 sum -23.345 -3.371 5.022 24.116 Atomic orbital electron populations 1.22334 0.94671 1.04880 1.04395 1.24648 0.91859 0.90508 0.70658 1.90468 1.71966 1.35149 1.34823 1.22163 0.96804 0.97460 1.04574 1.21167 0.91338 0.96157 1.04958 1.21695 0.92514 0.99705 1.03878 1.20582 0.88407 0.85064 0.76518 1.90728 1.80048 1.20998 1.48976 1.47918 1.07353 1.06055 1.73405 1.21764 1.00308 0.83017 1.01403 1.21868 0.77249 1.02775 0.99015 1.22470 0.86823 0.95401 0.93080 0.94393 1.23687 0.98482 0.97645 0.99767 1.21939 0.91530 0.94040 0.89295 1.45661 0.98806 1.60171 1.28073 1.18828 0.83377 1.32942 0.99502 0.90351 1.24844 0.97293 1.01335 0.96894 1.69843 1.20775 1.46680 1.19152 0.86228 0.82189 0.78476 0.79038 1.21208 1.21571 1.21035 0.89103 0.90171 0.89055 0.88369 0.88439 0.90648 0.90480 0.89060 0.89236 0.92906 0.91389 0.90761 0.91186 0.89380 0.90055 0.93334 0.92022 0.95756 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.96 10.26 36.00 0.37 -0.59 16 2 C 0.35 2.89 7.27 -29.04 -0.21 2.68 16 3 O -0.45 -6.03 16.71 5.99 0.10 -5.92 16 4 C -0.17 -1.10 5.64 -27.88 -0.16 -1.26 16 5 C -0.10 -1.03 3.79 -26.73 -0.10 -1.14 16 6 C -0.14 -1.32 4.26 -27.88 -0.12 -1.43 16 7 C 0.51 7.57 7.67 -10.99 -0.08 7.48 16 8 O -0.53 -10.33 15.48 5.56 0.09 -10.24 16 9 N -0.61 -8.99 2.87 -181.57 -0.52 -9.51 16 10 C 0.08 0.79 10.26 59.85 0.61 1.41 16 11 C 0.11 2.14 5.42 -4.04 -0.02 2.12 16 12 C 0.13 2.78 4.31 -72.26 -0.31 2.47 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.38 8.03 -26.08 -0.21 -3.59 16 15 C 0.16 3.97 7.22 -8.51 -0.06 3.91 16 16 N -0.60 -15.90 3.64 -176.83 -0.64 -16.54 16 17 C -0.22 -6.21 10.55 -15.06 -0.16 -6.37 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -28.08 11.73 55.49 0.65 -27.43 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.09 0.68 7.40 -51.93 -0.38 0.29 16 33 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.50 6.45 -51.93 -0.33 0.16 16 36 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 38 H 0.09 1.87 7.00 -51.93 -0.36 1.50 16 39 H 0.08 1.85 7.95 -51.93 -0.41 1.43 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.70 7.50 -51.93 -0.39 1.31 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -36.39 357.59 -7.84 -44.23 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.33 Total: -2.79 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.55 Total: 5.40 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.51 Total: -53.48 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.19 Total: -16.17 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.39 -7.84 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230759317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.251 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds