Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20759 * 119.99872 * 2 1 4 4 C 1.50706 * 119.99797 * 179.72272 * 2 1 3 5 5 C 1.52999 * 109.46733 * 180.27561 * 4 2 1 6 6 C 1.53006 * 109.46981 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47076 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00119 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99880 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99929 * 359.97438 * 9 7 6 11 11 C 1.46498 * 120.00029 * 180.02562 * 9 7 6 12 12 C 1.53003 * 109.47117 * 86.95647 * 11 9 7 13 13 H 1.08989 * 112.74207 * 42.75404 * 12 11 9 14 14 C 1.53504 * 113.46653 * 272.00911 * 12 11 9 15 15 C 1.53612 * 83.30454 * 219.17182 * 14 12 11 16 16 N 1.47069 * 113.46484 * 173.50190 * 12 11 9 17 17 C 1.36936 * 136.05918 * 321.92603 * 16 12 11 18 18 H 1.08002 * 119.99588 * 33.88605 * 17 16 12 19 19 C 1.38810 * 120.00205 * 213.88437 * 17 16 12 20 20 N 1.31618 * 120.00017 * 191.09073 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 11.09271 * 19 17 16 22 22 H 1.48505 * 109.46974 * 84.25786 * 21 19 17 23 23 H 1.48488 * 109.47442 * 204.25961 * 21 19 17 24 24 H 1.48505 * 109.47100 * 324.26375 * 21 19 17 25 25 H 1.08999 * 109.47376 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47149 * 120.00541 * 1 2 3 27 27 H 1.09005 * 109.47083 * 239.99852 * 1 2 3 28 28 H 1.09002 * 109.47184 * 300.27202 * 4 2 1 29 29 H 1.08997 * 109.47307 * 60.27409 * 4 2 1 30 30 H 1.09002 * 109.46992 * 299.99759 * 5 4 2 31 31 H 1.09003 * 109.47138 * 60.00236 * 5 4 2 32 32 H 1.08993 * 109.47344 * 299.99993 * 6 5 4 33 33 H 1.09003 * 109.46810 * 60.00258 * 6 5 4 34 34 H 1.08999 * 109.47483 * 94.39593 * 10 9 7 35 35 H 1.09001 * 109.47425 * 214.38975 * 10 9 7 36 36 H 1.09000 * 109.47647 * 334.39173 * 10 9 7 37 37 H 1.09000 * 109.47320 * 206.95206 * 11 9 7 38 38 H 1.09000 * 109.47165 * 326.95270 * 11 9 7 39 39 H 1.09005 * 114.20461 * 332.74397 * 14 12 11 40 40 H 1.09000 * 114.20648 * 105.56405 * 14 12 11 41 41 H 1.09000 * 113.41551 * 271.23849 * 15 14 12 42 42 H 1.09002 * 113.55675 * 140.82550 * 15 14 12 43 43 H 0.97000 * 120.00194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 0.0063 5 6 3.7647 -1.0255 0.0119 6 6 4.5297 -2.3506 0.0190 7 6 6.0114 -2.0751 0.0238 8 8 6.4156 -0.9317 0.0214 9 7 6.8871 -3.0995 0.0299 10 6 6.3988 -4.4807 0.0323 11 6 8.3275 -2.8318 0.0352 12 6 8.8089 -2.6599 1.4772 13 1 8.3784 -3.3961 2.1558 14 6 8.6989 -1.2175 1.9906 15 6 10.0453 -1.5418 2.6552 16 7 10.2697 -2.5374 1.5962 17 6 11.3593 -3.1017 0.9883 18 1 11.3158 -3.3695 -0.0571 19 6 12.5195 -3.3293 1.7155 20 7 13.6305 -3.6640 1.0943 21 14 12.5040 -3.1607 3.5757 22 1 12.0253 -4.4282 4.1837 23 1 13.8778 -2.8685 4.0578 24 1 11.5965 -2.0515 3.9647 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 -0.3633 -0.5139 0.8900 28 1 1.9935 -1.8745 0.8966 29 1 2.0009 -1.8789 -0.8833 30 1 4.0317 -0.4561 -0.8784 31 1 4.0243 -0.4518 0.9016 32 1 4.2627 -2.9196 0.9094 33 1 4.2702 -2.9246 -0.8706 34 1 6.3555 -4.8526 -0.9914 35 1 7.0752 -5.1043 0.6169 36 1 5.4025 -4.5131 0.4731 37 1 8.8540 -3.6671 -0.4265 38 1 8.5296 -1.9199 -0.5266 39 1 8.7571 -0.4594 1.2094 40 1 7.8812 -1.0541 2.6926 41 1 9.9439 -1.9796 3.6482 42 1 10.7541 -0.7141 2.6300 43 1 14.4414 -3.8227 1.6024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230759318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = -15.275270 kcal Electronic energy + Delta-G solvation = -22271.880854 eV Core-core repulsion = 18933.551259 eV Total energy + Delta-G solvation = -3338.329595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02790 -39.55653 -38.13430 -35.26015 -34.44690 -32.28372 -31.11977 -29.36346 -28.33230 -27.65125 -26.15397 -23.42858 -22.97769 -21.83375 -19.88367 -19.35012 -18.84107 -16.96188 -16.71101 -16.35771 -16.23921 -15.68432 -15.44785 -15.12548 -15.04305 -14.45367 -13.76083 -13.59474 -13.17420 -13.01003 -12.87216 -12.84568 -12.51809 -12.39411 -12.29430 -12.10726 -12.01168 -11.75142 -11.54978 -11.44815 -11.00874 -10.92690 -10.79099 -10.11539 -10.06980 -9.95476 -9.80439 -9.48679 -9.23141 -8.64825 -8.24024 -6.88081 -5.94905 -3.39776 1.69359 2.84581 3.17323 3.39846 3.47947 3.49272 3.75904 4.45201 4.56709 4.65499 4.72285 4.84579 4.88864 4.97061 4.98076 5.09419 5.20056 5.25368 5.30140 5.33598 5.39578 5.43689 5.47278 5.68310 5.71005 5.85122 5.93856 5.98736 6.02212 6.20716 6.27142 6.43370 6.54360 6.63297 6.71353 6.75117 7.22895 7.24755 7.52439 7.63090 8.35013 8.42759 8.70836 9.63821 10.45895 11.21601 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.003171 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.066055 B = 8827.871918 C = 9190.386375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.349 3.651 3 O -0.451 6.451 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.138 4.138 7 C 0.506 3.494 8 O -0.530 6.530 9 N -0.614 5.614 10 C 0.078 3.922 11 C 0.118 3.882 12 C 0.124 3.876 13 H 0.042 0.958 14 C -0.143 4.143 15 C 0.107 3.893 16 N -0.614 5.614 17 C -0.228 4.228 18 H 0.088 0.912 19 C 0.029 3.971 20 N -0.914 5.914 21 Si 0.864 3.136 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.244 1.244 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.116 -0.710 -1.609 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.224 3.776 3 O -0.324 6.324 4 C -0.210 4.210 5 C -0.136 4.136 6 C -0.178 4.178 7 C 0.294 3.706 8 O -0.406 6.406 9 N -0.348 5.348 10 C -0.066 4.066 11 C -0.005 4.005 12 C 0.017 3.983 13 H 0.060 0.940 14 C -0.181 4.181 15 C -0.018 4.018 16 N -0.342 5.342 17 C -0.355 4.355 18 H 0.106 0.894 19 C -0.171 4.171 20 N -0.557 5.557 21 Si 0.693 3.307 22 H -0.214 1.214 23 H -0.225 1.225 24 H -0.168 1.168 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.154 0.309 -1.718 26.213 hybrid contribution 0.152 -0.580 1.132 1.281 sum -26.002 -0.271 -0.586 26.010 Atomic orbital electron populations 1.22337 0.94666 1.04887 1.04406 1.24649 0.91863 0.90500 0.70637 1.90465 1.71969 1.35152 1.34847 1.22165 0.96810 0.97464 1.04588 1.21164 0.91341 0.96142 1.04931 1.21703 0.92554 0.99707 1.03883 1.20584 0.88384 0.85075 0.76574 1.90724 1.80036 1.20952 1.48882 1.47943 1.07335 1.06098 1.73429 1.21793 1.00183 0.82911 1.01710 1.21763 0.77363 1.02650 0.98718 1.22542 0.87120 0.94852 0.93799 0.94036 1.23509 0.96962 0.97408 1.00234 1.22786 0.94243 0.92167 0.92637 1.45999 1.00176 1.45450 1.42573 1.18492 0.88090 1.35479 0.93420 0.89431 1.25416 0.96144 0.97433 0.98099 1.69753 1.00102 1.50358 1.35506 0.87154 0.76820 0.79650 0.87039 1.21361 1.22472 1.16847 0.90166 0.89086 0.89061 0.88383 0.88415 0.90615 0.90534 0.89092 0.89208 0.92751 0.90879 0.91260 0.90366 0.89855 0.89517 0.92863 0.94362 0.93440 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.92 10.26 36.01 0.37 -0.55 16 2 C 0.35 2.81 7.27 -29.03 -0.21 2.59 16 3 O -0.45 -5.90 16.71 6.00 0.10 -5.80 16 4 C -0.17 -1.06 5.64 -27.88 -0.16 -1.21 16 5 C -0.10 -0.99 3.79 -26.73 -0.10 -1.09 16 6 C -0.14 -1.26 4.19 -27.88 -0.12 -1.38 16 7 C 0.51 7.26 7.66 -10.99 -0.08 7.18 16 8 O -0.53 -9.82 14.56 5.56 0.08 -9.74 16 9 N -0.61 -8.72 2.88 -181.57 -0.52 -9.24 16 10 C 0.08 0.76 10.30 59.84 0.62 1.38 16 11 C 0.12 2.15 5.37 -4.04 -0.02 2.13 16 12 C 0.12 2.52 4.30 -72.39 -0.31 2.21 16 13 H 0.04 0.84 8.14 -51.94 -0.42 0.42 16 14 C -0.14 -2.84 7.12 -26.15 -0.19 -3.02 16 15 C 0.11 2.39 5.53 -8.44 -0.05 2.35 16 16 N -0.61 -15.24 3.13 -176.78 -0.55 -15.79 16 17 C -0.23 -6.52 10.98 -15.06 -0.17 -6.69 16 18 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 19 C 0.03 0.86 5.50 -17.43 -0.10 0.76 16 20 N -0.91 -28.52 13.97 55.49 0.78 -27.75 16 21 Si 0.86 22.20 27.26 -169.99 -4.63 17.57 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.24 -5.82 4.04 56.52 0.23 -5.59 16 25 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 31 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.09 0.64 7.41 -51.93 -0.39 0.25 16 33 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.48 6.28 -51.93 -0.33 0.15 16 37 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 38 H 0.08 1.68 7.22 -51.93 -0.38 1.31 16 39 H 0.09 1.81 7.78 -51.93 -0.40 1.41 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.85 6.52 -51.93 -0.34 0.51 16 42 H 0.05 1.09 7.98 -51.93 -0.41 0.67 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -36.10 349.69 -7.45 -43.55 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.45 Total: -2.73 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.51 Total: 4.65 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.30 Total: -52.78 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.18 Total: -15.53 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.63 Total: 17.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.10 -7.45 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230759318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.276 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds