Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47238 * 2 1 4 4 C 1.34966 * 117.00126 * 179.97438 * 3 2 1 5 5 O 1.21706 * 120.00196 * 359.97438 * 4 3 2 6 6 C 1.41192 * 119.99892 * 180.02562 * 4 3 2 7 7 C 1.35176 * 125.61560 * 179.97438 * 6 4 3 8 8 N 1.36579 * 125.61170 * 359.97438 * 7 6 4 9 9 C 1.46500 * 119.99651 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47092 * 324.99871 * 9 8 7 11 11 C 1.52997 * 109.47007 * 84.99820 * 9 8 7 12 12 C 1.53000 * 109.47023 * 204.99612 * 9 8 7 13 13 C 1.53006 * 109.46846 * 65.00406 * 12 9 8 14 14 C 1.50701 * 109.47024 * 179.97438 * 13 12 9 15 15 H 1.08004 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47109 * 90.00453 * 18 16 14 20 20 H 1.48498 * 109.47260 * 209.99830 * 18 16 14 21 21 H 1.48494 * 109.47293 * 330.00082 * 18 16 14 22 22 C 1.51164 * 108.76921 * 180.26225 * 7 6 4 23 23 N 1.48310 * 105.45283 * 342.30089 * 22 7 6 24 24 C 1.48118 * 103.28988 * 27.37328 * 23 22 7 25 25 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47369 * 300.00143 * 1 2 3 27 27 H 1.09004 * 109.47008 * 60.00148 * 1 2 3 28 28 H 1.08998 * 109.47369 * 239.99856 * 2 1 3 29 29 H 1.09004 * 109.47008 * 119.99851 * 2 1 3 30 30 H 0.96997 * 120.00075 * 0.02562 * 8 7 6 31 31 H 1.08996 * 109.47853 * 300.00060 * 11 9 8 32 32 H 1.09002 * 109.47153 * 60.00089 * 11 9 8 33 33 H 1.08998 * 109.47533 * 179.97438 * 11 9 8 34 34 H 1.09002 * 109.47069 * 184.99840 * 12 9 8 35 35 H 1.08991 * 109.47625 * 305.00159 * 12 9 8 36 36 H 1.09002 * 109.46824 * 299.99583 * 13 12 9 37 37 H 1.09001 * 109.47241 * 59.99481 * 13 12 9 38 38 H 0.96998 * 120.00041 * 179.97438 * 17 16 14 39 39 H 1.08993 * 110.23078 * 101.45852 * 22 7 6 40 40 H 1.09004 * 110.22843 * 223.42122 * 22 7 6 41 41 H 1.00901 * 110.84816 * 146.32721 * 23 22 7 42 42 H 1.09004 * 110.23323 * 213.74137 * 24 23 22 43 43 H 1.09004 * 110.22311 * 91.78074 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3444 1.5241 0.0005 5 8 4.0858 0.5590 0.0015 6 6 3.8840 2.8288 0.0011 7 6 5.2004 3.1363 0.0022 8 7 6.2273 2.2359 0.0034 9 6 7.6145 2.7070 0.0039 10 1 7.6881 3.6206 -0.5862 11 6 8.0561 2.9911 1.4409 12 6 8.5182 1.6327 -0.6045 13 6 8.1575 1.4378 -2.0786 14 6 9.0481 0.3800 -2.6779 15 1 9.7962 -0.1049 -2.0683 16 6 8.9071 0.0307 -4.0042 17 7 7.9951 0.6202 -4.7461 18 14 10.0105 -1.2809 -4.7470 19 1 9.3737 -2.6128 -4.5859 20 1 10.2107 -0.9995 -6.1912 21 1 11.3240 -1.2731 -4.0544 22 6 5.3485 4.6406 0.0090 23 7 4.0318 5.1693 -0.4228 24 6 3.0849 4.1120 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 6.0382 1.2845 0.0031 31 1 7.4123 3.7564 1.8744 32 1 7.9824 2.0775 2.0309 33 1 9.0883 3.3412 1.4414 34 1 9.5593 1.9452 -0.5235 35 1 8.3779 0.6939 -0.0689 36 1 7.1164 1.1253 -2.1596 37 1 8.2978 2.3766 -2.6142 38 1 7.8961 0.3747 -5.6793 39 1 5.5879 4.9912 1.0129 40 1 6.1245 4.9461 -0.6928 41 1 3.8273 6.0435 0.0377 42 1 2.2583 4.0410 -0.7065 43 1 2.7085 4.3221 1.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246346567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -83.578103 kcal Electronic energy + Delta-G solvation = -22690.684642 eV Core-core repulsion = 19349.393214 eV Total energy + Delta-G solvation = -3341.291428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44941 -39.00578 -36.86215 -36.15564 -33.43060 -32.06559 -31.66927 -29.92587 -29.11861 -27.52350 -25.18122 -24.07097 -22.77334 -22.07018 -21.17197 -19.83292 -19.36769 -17.73771 -16.65630 -16.40372 -16.33756 -15.70990 -15.45107 -14.56128 -14.41111 -14.20810 -13.73464 -13.52264 -13.44469 -13.07787 -12.77719 -12.73169 -12.54469 -12.41219 -12.10052 -11.88546 -11.79583 -11.57394 -11.35507 -11.28606 -10.94244 -10.86107 -10.53553 -10.45583 -10.21299 -9.99602 -9.90259 -9.38180 -9.09912 -8.77028 -8.35166 -7.35291 -5.99292 -4.02878 1.60206 3.22296 3.32324 3.38514 3.40952 3.47296 3.50114 4.27075 4.42801 4.45444 5.00260 5.01564 5.06989 5.08261 5.18152 5.31913 5.33124 5.36500 5.41881 5.51075 5.52851 5.62053 5.80174 5.82644 5.91659 5.95495 5.99167 6.13807 6.18412 6.31321 6.38139 6.51395 6.61653 6.89784 6.95818 7.16685 7.37688 7.64189 7.76858 7.87088 7.98664 8.37360 8.39273 9.03822 9.61472 11.11681 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004752 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.164986 B = 5890.847987 C = 7130.002741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.537 3.463 5 O -0.548 6.548 6 C -0.376 4.376 7 C 0.285 3.715 8 N -0.659 5.659 9 C 0.125 3.875 10 H 0.083 0.917 11 C -0.165 4.165 12 C -0.120 4.120 13 C 0.022 3.978 14 C -0.525 4.525 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.062 3.938 23 N -0.651 5.651 24 C 0.117 3.883 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.424 0.576 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.343 0.657 42 H 0.082 0.918 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 7.760 13.459 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.389 3.611 5 O -0.441 6.441 6 C -0.388 4.388 7 C 0.162 3.838 8 N -0.282 5.282 9 C 0.021 3.979 10 H 0.101 0.899 11 C -0.223 4.223 12 C -0.158 4.158 13 C -0.015 4.015 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.068 4.068 23 N -0.280 5.280 24 C -0.013 4.013 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.268 0.732 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.158 0.842 42 H 0.100 0.900 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.664 7.360 12.536 17.456 hybrid contribution 0.455 -1.256 0.406 1.396 sum -9.209 6.104 12.941 17.016 Atomic orbital electron populations 1.21780 0.93215 1.02494 1.03143 1.22470 0.94802 0.81782 1.02165 1.86159 1.24936 1.30971 1.85497 1.18640 0.79939 0.89095 0.73384 1.90775 1.59670 1.42870 1.50817 1.18720 0.92586 0.92549 1.34987 1.20340 0.87802 0.91963 0.83696 1.44894 1.03970 1.09743 1.69627 1.21557 0.80610 0.99804 0.95972 0.89913 1.22287 1.01590 1.01750 0.96679 1.21982 0.97639 0.95953 1.00225 1.19110 0.97280 0.97000 0.88151 1.21200 1.18474 1.21291 0.95355 0.92725 1.25018 0.95471 0.96480 0.97342 1.69971 1.33447 1.42192 1.07411 0.86608 0.80974 0.82119 0.78383 1.20666 1.21200 1.19893 1.21859 0.95283 0.88846 1.00778 1.63811 1.01198 1.05111 1.57871 1.20976 0.94838 0.86954 0.98483 0.90733 0.91851 0.91625 0.91754 0.92120 0.73248 0.93110 0.92210 0.91170 0.91290 0.92499 0.96157 0.96662 0.92963 0.91046 0.87947 0.84196 0.90003 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.85 6.10 37.16 0.23 1.07 16 3 O -0.36 -5.74 9.88 -41.22 -0.41 -6.15 16 4 C 0.54 9.80 7.71 31.85 0.25 10.04 16 5 O -0.55 -11.43 14.39 -19.42 -0.28 -11.71 16 6 C -0.38 -6.17 6.04 -104.36 -0.63 -6.80 16 7 C 0.28 4.48 6.95 -81.34 -0.57 3.91 16 8 N -0.66 -11.21 4.56 -50.18 -0.23 -11.44 16 9 C 0.12 1.93 2.57 -67.93 -0.17 1.76 16 10 H 0.08 1.24 6.84 -51.93 -0.36 0.88 16 11 C -0.16 -1.97 9.49 37.16 0.35 -1.62 16 12 C -0.12 -2.32 4.69 -26.73 -0.13 -2.44 16 13 C 0.02 0.55 4.86 -27.88 -0.14 0.42 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 0.75 6.72 -3.97 -0.03 0.72 16 23 N -0.65 -7.71 7.77 -113.80 -0.88 -8.60 16 24 C 0.12 1.53 7.18 -4.08 -0.03 1.50 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.42 8.26 6.29 -40.82 -0.26 8.01 16 31 H 0.05 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.57 7.75 -51.93 -0.40 0.17 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 40 H 0.10 1.24 7.15 -51.93 -0.37 0.87 16 41 H 0.34 2.91 8.91 -39.29 -0.35 2.56 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -33.35 354.60 -8.81 -42.17 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.18 Total: 6.21 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.89 Total: -6.15 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.38 Total: -46.69 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.69 Total: -17.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.35 -8.81 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246346567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.411 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds