Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47238 * 2 1 4 4 C 1.34966 * 117.00126 * 179.97438 * 3 2 1 5 5 O 1.21706 * 120.00196 * 359.97438 * 4 3 2 6 6 C 1.41192 * 119.99892 * 180.02562 * 4 3 2 7 7 C 1.35176 * 125.61560 * 179.97438 * 6 4 3 8 8 N 1.36579 * 125.61170 * 359.97438 * 7 6 4 9 9 C 1.46500 * 119.99651 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47092 * 324.99871 * 9 8 7 11 11 C 1.52997 * 109.47007 * 84.99820 * 9 8 7 12 12 C 1.53000 * 109.47023 * 204.99612 * 9 8 7 13 13 C 1.53006 * 109.46846 * 65.00406 * 12 9 8 14 14 C 1.50701 * 109.47024 * 179.97438 * 13 12 9 15 15 H 1.08004 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47109 * 90.00453 * 18 16 14 20 20 H 1.48498 * 109.47260 * 209.99830 * 18 16 14 21 21 H 1.48494 * 109.47293 * 330.00082 * 18 16 14 22 22 C 1.51164 * 108.76921 * 180.26225 * 7 6 4 23 23 N 1.48310 * 105.45283 * 342.30089 * 22 7 6 24 24 C 1.48118 * 103.28988 * 27.37328 * 23 22 7 25 25 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47369 * 300.00143 * 1 2 3 27 27 H 1.09004 * 109.47008 * 60.00148 * 1 2 3 28 28 H 1.08998 * 109.47369 * 239.99856 * 2 1 3 29 29 H 1.09004 * 109.47008 * 119.99851 * 2 1 3 30 30 H 0.96997 * 120.00075 * 0.02562 * 8 7 6 31 31 H 1.08996 * 109.47853 * 300.00060 * 11 9 8 32 32 H 1.09002 * 109.47153 * 60.00089 * 11 9 8 33 33 H 1.08998 * 109.47533 * 179.97438 * 11 9 8 34 34 H 1.09002 * 109.47069 * 184.99840 * 12 9 8 35 35 H 1.08991 * 109.47625 * 305.00159 * 12 9 8 36 36 H 1.09002 * 109.46824 * 299.99583 * 13 12 9 37 37 H 1.09001 * 109.47241 * 59.99481 * 13 12 9 38 38 H 0.96998 * 120.00041 * 179.97438 * 17 16 14 39 39 H 1.08993 * 110.23078 * 101.45852 * 22 7 6 40 40 H 1.09004 * 110.22843 * 223.42122 * 22 7 6 41 41 H 1.00901 * 110.84816 * 146.32721 * 23 22 7 42 42 H 1.09004 * 110.23323 * 213.74137 * 24 23 22 43 43 H 1.09004 * 110.22311 * 91.78074 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3444 1.5241 0.0005 5 8 4.0858 0.5590 0.0015 6 6 3.8840 2.8288 0.0011 7 6 5.2004 3.1363 0.0022 8 7 6.2273 2.2359 0.0034 9 6 7.6145 2.7070 0.0039 10 1 7.6881 3.6206 -0.5862 11 6 8.0561 2.9911 1.4409 12 6 8.5182 1.6327 -0.6045 13 6 8.1575 1.4378 -2.0786 14 6 9.0481 0.3800 -2.6779 15 1 9.7962 -0.1049 -2.0683 16 6 8.9071 0.0307 -4.0042 17 7 7.9951 0.6202 -4.7461 18 14 10.0105 -1.2809 -4.7470 19 1 9.3737 -2.6128 -4.5859 20 1 10.2107 -0.9995 -6.1912 21 1 11.3240 -1.2731 -4.0544 22 6 5.3485 4.6406 0.0090 23 7 4.0318 5.1693 -0.4228 24 6 3.0849 4.1120 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 6.0382 1.2845 0.0031 31 1 7.4123 3.7564 1.8744 32 1 7.9824 2.0775 2.0309 33 1 9.0883 3.3412 1.4414 34 1 9.5593 1.9452 -0.5235 35 1 8.3779 0.6939 -0.0689 36 1 7.1164 1.1253 -2.1596 37 1 8.2978 2.3766 -2.6142 38 1 7.8961 0.3747 -5.6793 39 1 5.5879 4.9912 1.0129 40 1 6.1245 4.9461 -0.6928 41 1 3.8273 6.0435 0.0377 42 1 2.2583 4.0410 -0.7065 43 1 2.7085 4.3221 1.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246346567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = -106.858827 kcal Electronic energy + Delta-G solvation = -22691.694170 eV Core-core repulsion = 19349.393214 eV Total energy + Delta-G solvation = -3342.300956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71740 -40.20905 -38.12037 -37.50466 -35.38549 -33.59531 -32.73050 -31.42628 -30.37897 -28.58802 -27.03976 -25.19998 -23.94705 -23.43896 -22.72680 -21.16167 -20.62279 -18.93265 -18.50900 -17.97653 -17.63014 -16.79514 -16.74339 -16.55960 -15.59774 -15.38462 -14.91428 -14.86561 -14.56335 -14.42955 -14.32057 -14.05409 -13.65931 -13.58699 -13.25958 -13.19732 -12.92097 -12.91733 -12.89395 -12.62709 -12.46666 -12.38261 -12.12476 -11.93136 -11.72450 -11.42983 -11.36374 -11.35787 -11.05005 -10.59646 -9.72048 -8.57817 -8.23064 -6.35058 0.33069 1.35854 1.37636 1.48440 2.02177 2.18432 2.24018 2.37309 3.10365 3.23640 3.47957 3.80928 3.97130 4.00164 4.11960 4.12274 4.23455 4.33385 4.34310 4.42077 4.56344 4.65458 4.69562 4.80572 4.82894 4.91310 4.92189 4.96791 5.08402 5.14114 5.17349 5.21105 5.30863 5.46333 5.51331 5.61463 5.67868 5.81388 6.16598 6.19202 6.40353 6.49733 6.83339 7.01877 7.34802 8.88400 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004752 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.164986 B = 5890.847987 C = 7130.002741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.524 3.476 5 O -0.588 6.588 6 C -0.403 4.403 7 C 0.278 3.722 8 N -0.671 5.671 9 C 0.129 3.871 10 H 0.090 0.910 11 C -0.154 4.154 12 C -0.109 4.109 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.062 0.938 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.258 1.258 22 C 0.068 3.932 23 N -0.659 5.659 24 C 0.126 3.874 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.409 0.591 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.051 0.949 36 H -0.018 1.018 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.364 0.636 42 H 0.073 0.927 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 8.918 14.899 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.379 3.621 5 O -0.485 6.485 6 C -0.415 4.415 7 C 0.155 3.845 8 N -0.291 5.291 9 C 0.026 3.974 10 H 0.108 0.892 11 C -0.212 4.212 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.182 1.182 22 C -0.061 4.061 23 N -0.290 5.290 24 C -0.003 4.003 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.249 0.751 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.000 1.000 37 H 0.011 0.989 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.182 0.818 42 H 0.091 0.909 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.109 8.564 14.001 18.771 hybrid contribution 0.252 -1.643 -0.063 1.663 sum -8.857 6.922 13.938 17.906 Atomic orbital electron populations 1.21780 0.89831 1.04222 1.03752 1.22745 0.97421 0.80708 1.01256 1.86163 1.23879 1.32267 1.85101 1.19152 0.80403 0.89607 0.72938 1.90744 1.60540 1.44218 1.53001 1.19152 0.93724 0.93077 1.35560 1.20976 0.87330 0.93839 0.82373 1.45035 1.04995 1.09344 1.69760 1.21567 0.79192 0.98221 0.98460 0.89165 1.22197 1.03147 1.02342 0.93507 1.21798 0.99519 0.97459 0.95941 1.18952 0.94655 0.95018 0.92219 1.21734 1.18847 1.21861 0.95906 0.91951 1.26003 0.96985 0.98908 0.98036 1.70120 1.35398 1.44063 1.07768 0.85468 0.79388 0.78750 0.77583 1.20335 1.20657 1.18167 1.21960 0.95365 0.85850 1.02933 1.63737 1.00798 1.05739 1.58773 1.20885 0.94253 0.85680 0.99531 0.88434 0.90686 0.91492 0.93583 0.92243 0.75108 0.90752 0.92709 0.89194 0.89641 0.93044 0.99988 0.98944 0.92922 0.87175 0.87827 0.81752 0.90913 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 1.49 6.10 71.98 0.44 1.93 16 3 O -0.36 -11.81 9.88 -58.83 -0.58 -12.40 16 4 C 0.52 19.99 7.71 68.55 0.53 20.52 16 5 O -0.59 -26.16 14.39 19.16 0.28 -25.88 16 6 C -0.40 -13.33 6.04 -19.70 -0.12 -13.45 16 7 C 0.28 8.62 6.95 41.26 0.29 8.91 16 8 N -0.67 -23.10 4.56 -312.68 -1.42 -24.53 16 9 C 0.13 3.87 2.57 44.99 0.12 3.98 16 10 H 0.09 2.57 6.84 -2.39 -0.02 2.56 16 11 C -0.15 -3.24 9.49 71.98 0.68 -2.55 16 12 C -0.11 -4.22 4.69 30.60 0.14 -4.08 16 13 C 0.03 1.52 4.86 29.85 0.15 1.66 16 14 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 17 N -0.93 -59.03 13.29 21.45 0.28 -58.75 16 18 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 C 0.07 1.48 6.72 85.43 0.57 2.05 16 23 N -0.66 -14.13 7.77 -513.94 -4.00 -18.12 16 24 C 0.13 3.13 7.18 85.47 0.61 3.74 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 28 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.06 1.65 8.13 -2.38 -0.02 1.63 16 30 H 0.41 16.75 6.29 -92.71 -0.58 16.17 16 31 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H -0.02 -1.10 7.75 -2.39 -0.02 -1.12 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.11 1.57 8.01 -2.39 -0.02 1.55 16 40 H 0.10 2.27 7.15 -2.39 -0.02 2.25 16 41 H 0.36 5.01 8.91 -89.69 -0.80 4.21 16 42 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -76.08 354.60 1.05 -75.03 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.38 Total: 27.23 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.85 Total: -10.10 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -5.13 Total: -101.40 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.31 Total: -38.28 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.08 1.05 -75.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246346567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.832 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds