Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42897 * 109.47578 * 2 1 4 4 C 1.34968 * 117.00637 * 180.02562 * 3 2 1 5 5 O 1.21711 * 119.99438 * 0.02562 * 4 3 2 6 6 C 1.41185 * 120.00680 * 179.97438 * 4 3 2 7 7 C 1.35170 * 125.62147 * 179.97438 * 6 4 3 8 8 N 1.36584 * 125.61044 * 0.02562 * 7 6 4 9 9 C 1.46498 * 119.99585 * 180.27565 * 8 7 6 10 10 H 1.09004 * 109.47372 * 34.71847 * 9 8 7 11 11 C 1.52997 * 109.47036 * 274.72126 * 9 8 7 12 12 C 1.52999 * 109.46963 * 154.72285 * 9 8 7 13 13 C 1.52997 * 109.47080 * 294.99494 * 12 9 8 14 14 C 1.50701 * 109.47234 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00351 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00191 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99727 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46964 * 90.00026 * 18 16 14 20 20 H 1.48494 * 109.46861 * 210.00055 * 18 16 14 21 21 H 1.48498 * 109.46932 * 330.00262 * 18 16 14 22 22 C 1.51158 * 108.77246 * 180.26756 * 7 6 4 23 23 N 1.48317 * 105.45286 * 342.30127 * 22 7 6 24 24 C 1.48114 * 103.28878 * 27.37639 * 23 22 7 25 25 H 1.09004 * 109.47182 * 59.99656 * 1 2 3 26 26 H 1.08998 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46875 * 299.99935 * 1 2 3 28 28 H 1.09003 * 109.46875 * 240.00065 * 2 1 3 29 29 H 1.09000 * 109.47357 * 119.99868 * 2 1 3 30 30 H 0.97001 * 119.99970 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.47293 * 60.00168 * 11 9 8 32 32 H 1.09003 * 109.47189 * 180.02562 * 11 9 8 33 33 H 1.09009 * 109.47238 * 300.00198 * 11 9 8 34 34 H 1.08997 * 109.47492 * 54.99915 * 12 9 8 35 35 H 1.09007 * 109.47243 * 174.99697 * 12 9 8 36 36 H 1.09002 * 109.47641 * 299.99883 * 13 12 9 37 37 H 1.08998 * 109.46968 * 60.00255 * 13 12 9 38 38 H 0.97000 * 120.00520 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.23296 * 101.45535 * 22 7 6 40 40 H 1.08994 * 110.23401 * 223.42470 * 22 7 6 41 41 H 1.00902 * 110.84809 * 146.32102 * 23 22 7 42 42 H 1.08996 * 110.23293 * 213.74174 * 24 23 22 43 43 H 1.09006 * 110.23086 * 91.77236 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3444 1.5241 -0.0005 5 8 4.0857 0.5588 -0.0015 6 6 3.8841 2.8287 -0.0011 7 6 5.2004 3.1361 -0.0012 8 7 6.2274 2.2356 -0.0012 9 6 7.6145 2.7068 0.0048 10 1 7.6851 3.6214 0.5936 11 6 8.0637 2.9883 -1.4304 12 6 8.5150 1.6335 0.6197 13 6 8.1466 1.4410 2.0921 14 6 9.0339 0.3843 2.6980 15 1 9.7852 -0.1018 2.0932 16 6 8.8860 0.0372 4.0242 17 7 9.6600 -0.8853 4.5527 18 14 7.5861 0.8773 5.0701 19 1 6.3145 0.1151 4.9860 20 1 8.0421 0.9251 6.4825 21 1 7.3683 2.2596 4.5731 22 6 5.3486 4.6404 0.0048 23 7 4.0316 5.1690 -0.4263 24 6 3.0850 4.1120 -0.0017 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 6.0383 1.2843 -0.0008 31 1 7.4223 3.7530 -1.8685 32 1 9.0960 3.3385 -1.4260 33 1 7.9931 2.0737 -2.0193 34 1 8.3775 0.6937 0.0849 35 1 9.5566 1.9457 0.5436 36 1 8.2842 2.3807 2.6270 37 1 7.1051 1.1287 2.1682 38 1 9.5562 -1.1293 5.4858 39 1 5.5888 4.9915 1.0084 40 1 6.1241 4.9456 -0.6977 41 1 3.8275 6.0434 0.0340 42 1 2.2579 4.0407 -0.7080 43 1 2.7094 4.3224 0.9998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246346575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -81.231113 kcal Electronic energy + Delta-G solvation = -22800.357405 eV Core-core repulsion = 19459.167750 eV Total energy + Delta-G solvation = -3341.189655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56921 -39.12352 -36.99915 -36.26845 -33.49636 -32.16227 -31.75821 -30.26522 -29.33782 -27.65352 -25.41964 -24.17006 -22.85331 -22.06408 -21.00356 -19.93693 -19.49269 -17.86314 -16.84088 -16.76596 -16.48650 -15.85558 -15.44597 -14.59133 -14.46128 -14.31321 -13.83776 -13.65958 -13.42066 -13.15628 -13.03316 -12.86270 -12.66067 -12.59095 -12.31366 -11.94229 -11.91261 -11.68648 -11.57350 -11.39914 -11.08748 -11.03663 -10.68080 -10.30667 -10.13042 -10.08038 -9.87430 -9.63683 -9.25636 -8.92229 -8.57889 -7.48953 -6.08698 -4.07166 1.47094 3.12289 3.28219 3.34724 3.35298 3.37144 3.37380 4.15855 4.30017 4.41372 4.91594 4.94288 4.96625 5.00675 5.14280 5.18643 5.24530 5.26135 5.30349 5.38268 5.48147 5.54469 5.70297 5.75209 5.82350 5.87973 5.89718 6.05699 6.11737 6.19110 6.23989 6.37502 6.43805 6.71811 6.78629 7.03116 7.17251 7.21374 7.34513 7.71344 7.75954 8.25429 8.47566 8.95583 9.53883 11.04694 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.005381 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.919777 B = 5201.996614 C = 6349.020398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.536 3.464 5 O -0.547 6.547 6 C -0.374 4.374 7 C 0.282 3.718 8 N -0.664 5.664 9 C 0.124 3.876 10 H 0.081 0.919 11 C -0.166 4.166 12 C -0.112 4.112 13 C -0.014 4.014 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.060 3.940 23 N -0.652 5.652 24 C 0.115 3.885 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.425 0.575 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.344 0.656 42 H 0.082 0.918 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.936 11.307 -10.847 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.389 3.611 5 O -0.441 6.441 6 C -0.386 4.386 7 C 0.160 3.840 8 N -0.287 5.287 9 C 0.019 3.981 10 H 0.099 0.901 11 C -0.224 4.224 12 C -0.150 4.150 13 C -0.051 4.051 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.070 4.070 23 N -0.281 5.281 24 C -0.014 4.014 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.268 0.732 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.412 10.803 -11.419 20.664 hybrid contribution -0.737 -0.222 1.762 1.923 sum -14.150 10.582 -9.657 20.136 Atomic orbital electron populations 1.21782 0.93132 1.02574 1.03159 1.22487 0.94875 0.81664 1.02223 1.86159 1.24837 1.31092 1.85420 1.18651 0.80016 0.89079 0.73400 1.90782 1.59699 1.42853 1.50754 1.18753 0.92602 0.92618 1.34658 1.20366 0.87790 0.92021 0.83854 1.44943 1.04021 1.09785 1.69999 1.21579 0.80502 0.99496 0.96475 0.90103 1.22291 1.01678 1.02117 0.96338 1.21809 0.98126 0.96507 0.98534 1.19583 0.96922 0.97222 0.91358 1.21102 1.18672 1.20347 0.95921 0.90952 1.25004 0.95672 0.94666 0.97904 1.69903 1.39168 1.31189 1.13790 0.86801 0.82353 0.80662 0.79582 1.20277 1.21310 1.19248 1.21883 0.95145 0.88768 1.01231 1.63834 1.01208 1.05269 1.57783 1.20993 0.94742 0.86887 0.98791 0.91733 0.90654 0.91716 0.91946 0.91823 0.73206 0.92654 0.91083 0.92017 0.91816 0.90597 0.96762 0.96865 0.92689 0.90661 0.88088 0.84022 0.90003 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.15 0.38 -0.99 16 2 C 0.06 0.80 6.10 37.15 0.23 1.03 16 3 O -0.36 -5.45 9.88 -41.23 -0.41 -5.86 16 4 C 0.54 9.28 7.71 31.85 0.25 9.53 16 5 O -0.55 -10.90 14.39 -19.43 -0.28 -11.17 16 6 C -0.37 -5.76 6.04 -104.36 -0.63 -6.39 16 7 C 0.28 4.13 6.96 -81.34 -0.57 3.57 16 8 N -0.66 -10.56 4.55 -50.19 -0.23 -10.79 16 9 C 0.12 1.78 2.46 -67.93 -0.17 1.62 16 10 H 0.08 1.08 7.44 -51.93 -0.39 0.69 16 11 C -0.17 -1.93 9.47 37.16 0.35 -1.58 16 12 C -0.11 -2.04 4.69 -26.73 -0.13 -2.17 16 13 C -0.01 -0.32 3.93 -27.88 -0.11 -0.42 16 14 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 18 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 22 C 0.06 0.66 6.33 -3.97 -0.03 0.63 16 23 N -0.65 -6.78 7.77 -113.80 -0.88 -7.67 16 24 C 0.12 1.40 7.18 -4.07 -0.03 1.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.42 7.76 6.29 -40.82 -0.26 7.51 16 31 H 0.05 0.58 7.08 -51.93 -0.37 0.21 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 37 H 0.01 0.32 7.18 -51.93 -0.37 -0.05 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.99 6.89 -51.93 -0.36 0.63 16 41 H 0.34 2.64 8.91 -39.29 -0.35 2.29 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -33.20 350.02 -8.42 -41.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.12 Total: 5.34 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.88 Total: -7.07 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.34 Total: -45.71 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.69 Total: -17.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.20 -8.42 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246346575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.613 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds