Wall clock time and date at job start Tue Mar 31 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.46980 * 2 1 4 4 C 1.34644 * 117.00135 * 179.97438 * 3 2 1 5 5 O 1.21516 * 119.99604 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00016 * 179.72609 * 4 3 2 7 7 C 1.48294 * 128.21043 * 180.02562 * 6 4 3 8 8 H 1.09003 * 112.20376 * 343.24181 * 7 6 4 9 9 C 1.54602 * 104.26105 * 221.59593 * 7 6 4 10 10 C 1.54312 * 104.75037 * 334.85556 * 9 7 6 11 11 C 1.48295 * 128.21062 * 359.67254 * 6 4 3 12 12 H 1.09004 * 112.20565 * 16.76159 * 11 6 4 13 13 C 1.53701 * 107.27785 * 252.60721 * 11 6 4 14 14 C 1.53143 * 108.87804 * 295.99338 * 13 11 6 15 15 H 1.09002 * 109.43671 * 293.82909 * 14 13 11 16 16 N 1.46899 * 109.43690 * 173.91345 * 14 13 11 17 17 C 1.46900 * 110.99974 * 154.99998 * 16 14 13 18 18 C 1.50705 * 109.47103 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99807 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00229 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99703 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46946 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47362 * 119.99740 * 22 20 18 25 25 H 1.48497 * 109.47134 * 239.99762 * 22 20 18 26 26 C 1.52462 * 109.58803 * 54.13722 * 14 13 11 27 27 H 1.08999 * 109.46752 * 60.00539 * 1 2 3 28 28 H 1.08999 * 109.46600 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47255 * 300.00304 * 1 2 3 30 30 H 1.08997 * 109.47282 * 240.00178 * 2 1 3 31 31 H 1.09002 * 109.47256 * 119.99405 * 2 1 3 32 32 H 1.09004 * 110.38920 * 93.67028 * 9 7 6 33 33 H 1.08998 * 110.38441 * 215.92902 * 9 7 6 34 34 H 1.09002 * 110.38653 * 118.82286 * 10 9 7 35 35 H 1.09000 * 110.38404 * 241.07308 * 10 9 7 36 36 H 1.09006 * 109.56591 * 55.81031 * 13 11 6 37 37 H 1.09000 * 109.56794 * 176.17097 * 13 11 6 38 38 H 1.00904 * 110.99959 * 31.04561 * 16 14 13 39 39 H 1.08999 * 109.47221 * 299.99892 * 17 16 14 40 40 H 1.08996 * 109.47297 * 60.00242 * 17 16 14 41 41 H 0.97000 * 119.99418 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.38863 * 186.03833 * 26 14 13 43 43 H 1.08995 * 109.64117 * 65.73814 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0890 0.5817 0.0015 6 7 3.8639 2.7908 -0.0050 7 6 5.2912 3.1932 -0.0060 8 1 5.9497 2.3762 0.2893 9 6 5.3531 4.3797 0.9832 10 6 3.9272 4.9695 0.9790 11 6 3.1377 4.0838 -0.0188 12 1 2.0916 3.9718 0.2665 13 6 3.3056 4.6867 -1.4226 14 6 4.7881 4.9901 -1.6575 15 1 5.1088 5.7800 -0.9782 16 7 4.9831 5.4301 -3.0455 17 6 6.1839 6.2672 -3.1686 18 6 6.3503 6.6990 -4.6029 19 1 5.6358 6.3828 -5.3483 20 6 7.4154 7.4968 -4.9635 21 7 8.2858 7.8815 -4.0557 22 14 7.6220 8.0314 -6.7414 23 1 6.5177 7.4684 -7.5591 24 1 7.5901 9.5140 -6.8194 25 1 8.9228 7.5364 -7.2591 26 6 5.6130 3.7324 -1.4084 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.6158 4.0288 1.9812 33 1 6.0739 5.1222 0.6408 34 1 3.4883 4.9088 1.9749 35 1 3.9451 6.0038 0.6354 36 1 2.9557 3.9745 -2.1700 37 1 2.7282 5.6083 -1.4955 38 1 4.1675 5.9148 -3.3891 39 1 6.0798 7.1475 -2.5343 40 1 7.0584 5.6962 -2.8569 41 1 9.0353 8.4425 -4.3095 42 1 6.6733 3.9767 -1.4712 43 1 5.3654 2.9780 -2.1551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255181275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:43 Heat of formation + Delta-G solvation = -78.089445 kcal Electronic energy + Delta-G solvation = -23086.223000 eV Core-core repulsion = 19745.169578 eV Total energy + Delta-G solvation = -3341.053422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08581 -39.53674 -36.42145 -35.31046 -32.75803 -32.23319 -31.28524 -31.12384 -29.88679 -26.23949 -24.34314 -24.12182 -22.91662 -21.75461 -20.79706 -20.63790 -19.15759 -17.83807 -16.84565 -16.67079 -16.41122 -15.85944 -14.69643 -14.52949 -14.47977 -14.03008 -13.64995 -13.57851 -13.33476 -13.01575 -12.96515 -12.72356 -12.39465 -12.14814 -12.06531 -11.79725 -11.72706 -11.62713 -11.32519 -11.11125 -10.87156 -10.63366 -10.61133 -10.52239 -10.38160 -10.28480 -10.12708 -9.81439 -9.16937 -8.69771 -8.49339 -7.30566 -6.04699 -4.06240 2.03679 2.86942 3.30218 3.37758 3.42847 3.82847 4.41890 4.51336 4.63177 4.74617 4.79761 4.82569 5.02008 5.09649 5.11526 5.22275 5.31142 5.31548 5.32050 5.45204 5.51298 5.56335 5.62499 5.73162 5.85413 5.86597 5.98016 6.01225 6.04572 6.20197 6.22769 6.35004 6.38479 6.58495 6.71268 7.25105 7.39815 7.58332 7.78745 8.12238 8.31292 8.39165 8.60463 9.03520 9.58974 11.06391 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.003633 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.331252 B = 7705.020833 C = 8086.619982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 O -0.371 6.371 4 C 0.671 3.329 5 O -0.578 6.578 6 N -0.598 5.598 7 C 0.154 3.846 8 H 0.102 0.898 9 C -0.133 4.133 10 C -0.130 4.130 11 C 0.136 3.864 12 H 0.100 0.900 13 C -0.131 4.131 14 C 0.087 3.913 15 H 0.045 0.955 16 N -0.687 5.687 17 C 0.195 3.805 18 C -0.513 4.513 19 H 0.062 0.938 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.116 4.116 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.329 0.671 39 H -0.014 1.014 40 H 0.028 0.972 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 -9.774 12.373 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.426 3.574 5 O -0.468 6.468 6 N -0.338 5.338 7 C 0.052 3.948 8 H 0.120 0.880 9 C -0.171 4.171 10 C -0.168 4.168 11 C 0.032 3.968 12 H 0.118 0.882 13 C -0.169 4.169 14 C -0.024 4.024 15 H 0.063 0.937 16 N -0.318 5.318 17 C 0.069 3.931 18 C -0.552 4.552 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.155 4.155 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.003 0.997 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.097 -10.714 12.189 20.855 hybrid contribution -0.002 1.073 -0.587 1.223 sum -13.099 -9.641 11.602 19.979 Atomic orbital electron populations 1.21819 0.92672 1.02914 1.03508 1.22911 0.94674 0.79009 1.02669 1.86232 1.22232 1.32836 1.87212 1.17405 0.80930 0.82759 0.76300 1.90985 1.59963 1.38940 1.56870 1.47884 1.08813 1.02330 1.74774 1.22361 0.79774 0.96175 0.96515 0.88022 1.22656 0.97581 0.97627 0.99231 1.22682 0.95344 0.99773 0.99031 1.22417 0.96642 0.81891 0.95866 0.88198 1.22297 0.97688 1.01118 0.95847 1.21434 0.92877 0.96055 0.91994 0.93720 1.60697 1.07640 1.46928 1.16531 1.19585 0.87321 0.89601 0.96620 1.21236 1.10100 1.29791 0.94080 0.91974 1.24985 0.95804 0.96144 0.97654 1.69971 1.14123 1.36461 1.33194 0.86443 0.78079 0.78110 0.84792 1.19672 1.21114 1.21005 1.21968 1.01033 0.98070 0.94396 0.91405 0.90120 0.91589 0.91217 0.91390 0.91219 0.89214 0.91236 0.89721 0.90786 0.90940 0.85385 0.99668 0.95378 0.92987 0.90290 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.08 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -4.93 9.80 -40.34 -0.40 -5.32 16 4 C 0.67 10.48 8.72 54.05 0.47 10.95 16 5 O -0.58 -10.59 16.45 -19.28 -0.32 -10.90 16 6 N -0.60 -8.48 2.76 -158.65 -0.44 -8.92 16 7 C 0.15 2.16 4.12 -65.76 -0.27 1.89 16 8 H 0.10 1.45 7.93 -51.93 -0.41 1.04 16 9 C -0.13 -1.55 5.98 -25.20 -0.15 -1.70 16 10 C -0.13 -1.39 6.00 -24.97 -0.15 -1.54 16 11 C 0.14 1.63 4.16 -65.51 -0.27 1.36 16 12 H 0.10 1.07 7.92 -51.93 -0.41 0.66 16 13 C -0.13 -1.78 4.89 -26.29 -0.13 -1.91 16 14 C 0.09 1.44 2.13 -67.91 -0.14 1.29 16 15 H 0.05 0.75 5.19 -51.93 -0.27 0.48 16 16 N -0.69 -14.26 6.28 -108.20 -0.68 -14.94 16 17 C 0.20 4.98 5.24 -4.97 -0.03 4.95 16 18 C -0.51 -14.41 9.32 -34.44 -0.32 -14.73 16 19 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.12 -1.91 5.03 -26.67 -0.13 -2.04 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.89 7.06 -51.93 -0.37 0.53 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.33 6.53 8.35 -39.29 -0.33 6.20 16 39 H -0.01 -0.39 8.05 -51.93 -0.42 -0.81 16 40 H 0.03 0.77 7.53 -51.93 -0.39 0.38 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -32.20 341.15 -8.71 -40.92 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.13 Total: 2.85 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.61 Total: 0.39 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.38 Total: -49.68 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.71 Total: -16.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.20 -8.71 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255181275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.172 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds