Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46870 * 2 1 4 4 C 1.53000 * 109.47681 * 239.99537 * 2 1 3 5 5 C 1.50694 * 109.47403 * 174.99992 * 4 2 1 6 6 O 1.21283 * 119.99807 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99804 * 179.97438 * 5 4 2 8 8 C 1.47151 * 120.98496 * 359.71723 * 7 5 4 9 9 C 1.53708 * 108.16295 * 129.43100 * 8 7 5 10 10 O 1.42960 * 109.14739 * 52.54267 * 9 8 7 11 11 C 1.42968 * 114.16417 * 297.28417 * 10 9 8 12 12 C 1.47157 * 120.97974 * 180.02562 * 7 5 4 13 13 N 1.46900 * 109.47216 * 119.99032 * 2 1 3 14 14 C 1.47958 * 111.00282 * 297.28181 * 13 2 1 15 15 C 1.53938 * 86.30357 * 137.63532 * 14 13 2 16 16 C 1.50698 * 113.73359 * 221.86848 * 15 14 13 17 17 H 1.07997 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46968 * 59.99867 * 20 18 16 22 22 H 1.48496 * 109.46933 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47132 * 300.00148 * 20 18 16 24 24 C 1.48308 * 111.10485 * 36.53512 * 13 2 1 25 25 H 1.08995 * 109.47498 * 290.13076 * 1 2 3 26 26 H 1.09003 * 109.47566 * 50.13824 * 1 2 3 27 27 H 1.09003 * 109.46895 * 170.13620 * 1 2 3 28 28 H 1.09005 * 109.46762 * 295.00146 * 4 2 1 29 29 H 1.09000 * 109.46678 * 54.99496 * 4 2 1 30 30 H 1.09008 * 109.68332 * 249.21099 * 8 7 5 31 31 H 1.08996 * 109.68099 * 9.76385 * 8 7 5 32 32 H 1.08994 * 109.66378 * 292.57227 * 9 8 7 33 33 H 1.09006 * 109.48601 * 172.39899 * 9 8 7 34 34 H 1.09000 * 109.51270 * 302.65822 * 11 10 9 35 35 H 1.08999 * 109.55373 * 182.53259 * 11 10 9 36 36 H 1.08993 * 109.68237 * 350.23017 * 12 7 5 37 37 H 1.09001 * 109.68282 * 110.79325 * 12 7 5 38 38 H 1.08996 * 113.76128 * 23.26256 * 14 13 2 39 39 H 1.09004 * 113.75990 * 252.00344 * 14 13 2 40 40 H 1.09002 * 113.73561 * 90.68936 * 15 14 13 41 41 H 0.96993 * 119.99620 * 179.97438 * 19 18 16 42 42 H 1.08994 * 113.76018 * 108.13671 * 24 13 2 43 43 H 1.08995 * 113.85771 * 336.78130 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 8 4.1449 -0.0203 -0.4444 7 7 4.2150 -1.1806 -2.3340 8 6 3.5058 -1.9124 -3.3956 9 6 3.9862 -1.3731 -4.7524 10 8 5.4144 -1.4186 -4.7960 11 6 6.0562 -0.5954 -3.8191 12 6 5.6814 -1.0905 -2.4171 13 7 2.0196 -0.6923 1.1995 14 6 1.5995 0.0156 2.4290 15 6 1.2893 -1.3776 3.0057 16 6 0.0022 -1.4378 3.7871 17 1 -0.6042 -0.5510 3.8980 18 6 -0.4008 -2.6247 4.3615 19 7 0.3379 -3.7045 4.2269 20 14 -1.9959 -2.6991 5.3308 21 1 -3.1297 -2.3248 4.4477 22 1 -2.2011 -4.0785 5.8411 23 1 -1.9254 -1.7534 6.4735 24 6 1.1495 -1.8426 1.5449 25 1 -0.3634 0.3537 0.9648 26 1 -0.3634 0.6587 -0.7888 27 1 -0.3633 -1.0125 -0.1761 28 1 1.7517 -1.7716 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.7294 -2.9766 -3.3203 31 1 2.4319 -1.7545 -3.2959 32 1 3.6507 -0.3436 -4.8775 33 1 3.5777 -1.9890 -5.5537 34 1 5.7283 0.4370 -3.9408 35 1 7.1371 -0.6516 -3.9481 36 1 6.0490 -0.3880 -1.6692 37 1 6.1200 -2.0735 -2.2452 38 1 0.7175 0.6419 2.2955 39 1 2.4135 0.5307 2.9391 40 1 2.1284 -1.8307 3.5337 41 1 0.0545 -4.5394 4.6313 42 1 1.6052 -2.8128 1.3473 43 1 0.1355 -1.7615 1.1534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256335539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -32.208811 kcal Electronic energy + Delta-G solvation = -23090.779731 eV Core-core repulsion = 19751.715842 eV Total energy + Delta-G solvation = -3339.063888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37267 -39.23124 -38.04090 -34.72704 -33.68866 -32.16243 -31.55866 -28.69487 -27.16705 -27.11045 -24.93146 -24.39217 -23.87515 -22.30776 -20.26773 -19.00639 -17.89407 -17.23558 -16.82749 -16.59327 -15.88115 -15.82764 -15.32108 -15.10177 -14.70539 -14.39584 -14.30362 -14.03894 -13.28004 -13.11339 -12.77578 -12.70786 -12.30800 -12.02529 -11.85546 -11.72249 -11.61164 -11.19206 -11.00155 -10.95137 -10.92283 -10.58864 -10.46969 -10.38703 -10.14822 -9.61169 -9.48772 -9.03332 -8.90801 -8.59344 -8.38747 -7.61060 -6.00796 -4.05205 2.85679 2.90783 3.31031 3.36349 3.38483 3.52858 4.42540 4.47097 4.54322 4.74151 4.78882 4.91076 4.97219 5.01058 5.10849 5.22239 5.29729 5.32783 5.44962 5.51232 5.56945 5.66457 5.73343 5.76179 5.82484 6.03099 6.12884 6.30127 6.38727 6.49937 6.60687 6.70078 6.78504 6.84790 6.97100 7.22850 7.36281 7.42970 7.78989 7.98612 8.23624 8.41472 8.43734 8.97607 9.59145 11.08457 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.003525 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.418664 B = 7940.981346 C = 7958.126191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.062 3.938 3 H 0.076 0.924 4 C -0.124 4.124 5 C 0.523 3.477 6 O -0.508 6.508 7 N -0.629 5.629 8 C 0.074 3.926 9 C 0.048 3.952 10 O -0.382 6.382 11 C 0.049 3.951 12 C 0.078 3.922 13 N -0.470 5.470 14 C -0.002 4.002 15 C 0.041 3.959 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 4.621 -18.822 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.049 4.049 3 H 0.094 0.906 4 C -0.164 4.164 5 C 0.311 3.689 6 O -0.380 6.380 7 N -0.367 5.367 8 C -0.049 4.049 9 C -0.030 4.030 10 O -0.300 6.300 11 C -0.028 4.028 12 C -0.045 4.045 13 N -0.192 5.192 14 C -0.131 4.131 15 C 0.022 3.978 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.133 4.133 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.650 4.561 -18.551 20.228 hybrid contribution -1.959 0.025 0.630 2.058 sum 4.691 4.586 -17.921 19.084 Atomic orbital electron populations 1.22511 0.97018 1.02114 1.02615 1.21779 0.92529 0.98459 0.92089 0.90628 1.21686 0.91679 1.03359 0.99658 1.20695 0.90260 0.77849 0.80069 1.90715 1.69825 1.41020 1.36476 1.48221 1.06762 1.56348 1.25381 1.22468 0.98090 0.97078 0.87313 1.23061 0.81678 1.01237 0.97034 1.87950 1.18672 1.67856 1.55556 1.23007 0.98340 0.93944 0.87549 1.22195 0.81111 1.03010 0.98139 1.68844 1.44768 1.05980 0.99618 1.24080 0.97740 0.99330 0.91944 1.20252 0.97186 0.88993 0.91406 1.21069 1.05912 0.95410 1.33039 0.92632 1.25008 0.96883 0.95857 0.95856 1.69968 1.37724 1.00284 1.44482 0.86717 0.84035 0.77038 0.80535 1.20315 1.21308 1.20214 1.24373 0.94905 0.93610 1.00403 0.90885 0.93318 0.91654 0.88961 0.89667 0.90546 0.88650 0.92643 0.87739 0.92740 0.87777 0.88079 0.90998 0.92523 0.91964 0.92532 0.92928 0.92213 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 7.80 37.15 0.29 -2.59 16 2 C 0.06 1.05 1.96 -67.72 -0.13 0.92 16 3 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 4 C -0.12 -1.73 3.65 -27.89 -0.10 -1.83 16 5 C 0.52 8.20 7.57 -10.99 -0.08 8.12 16 6 O -0.51 -10.06 14.82 5.55 0.08 -9.98 16 7 N -0.63 -7.86 3.01 -172.00 -0.52 -8.37 16 8 C 0.07 0.67 6.57 -3.32 -0.02 0.65 16 9 C 0.05 0.37 7.00 37.53 0.26 0.64 16 10 O -0.38 -3.84 10.74 -35.23 -0.38 -4.22 16 11 C 0.05 0.44 6.99 37.33 0.26 0.71 16 12 C 0.08 0.89 6.64 -3.51 -0.02 0.86 16 13 N -0.47 -9.93 5.34 -229.27 -1.22 -11.16 16 14 C 0.00 -0.05 7.29 -2.77 -0.02 -0.07 16 15 C 0.04 1.05 3.61 -90.83 -0.33 0.72 16 16 C -0.52 -14.14 8.77 -34.44 -0.30 -14.45 16 17 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 18 C 0.07 1.84 5.46 -17.81 -0.10 1.75 16 19 N -0.89 -25.81 13.27 55.43 0.74 -25.08 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.00 -0.10 6.96 -2.57 -0.02 -0.12 16 25 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 28 H 0.09 1.29 7.80 -51.93 -0.41 0.88 16 29 H 0.09 0.90 7.67 -51.93 -0.40 0.51 16 30 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.10 0.72 6.05 -51.93 -0.31 0.41 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.27 7.08 -51.93 -0.37 0.90 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.20 5.97 -51.93 -0.31 0.89 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.63 8.13 -51.93 -0.42 1.21 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.51 4.95 -51.93 -0.26 1.25 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -32.50 335.69 -8.46 -40.95 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.88 Total: 1.37 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.32 Total: -4.71 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -1.01 Total: -44.61 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.30 Total: -14.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.50 -8.46 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256335539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.745 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds