Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46870 * 2 1 4 4 C 1.53000 * 109.47681 * 239.99537 * 2 1 3 5 5 C 1.50694 * 109.47403 * 174.99992 * 4 2 1 6 6 O 1.21283 * 119.99807 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99804 * 179.97438 * 5 4 2 8 8 C 1.47151 * 120.98496 * 359.71723 * 7 5 4 9 9 C 1.53708 * 108.16295 * 129.43100 * 8 7 5 10 10 O 1.42960 * 109.14739 * 52.54267 * 9 8 7 11 11 C 1.42968 * 114.16417 * 297.28417 * 10 9 8 12 12 C 1.47157 * 120.97974 * 180.02562 * 7 5 4 13 13 N 1.46900 * 109.47216 * 119.99032 * 2 1 3 14 14 C 1.47958 * 111.00282 * 297.28181 * 13 2 1 15 15 C 1.53938 * 86.30357 * 137.63532 * 14 13 2 16 16 C 1.50698 * 113.73359 * 221.86848 * 15 14 13 17 17 H 1.07997 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46968 * 59.99867 * 20 18 16 22 22 H 1.48496 * 109.46933 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47132 * 300.00148 * 20 18 16 24 24 C 1.48308 * 111.10485 * 36.53512 * 13 2 1 25 25 H 1.08995 * 109.47498 * 290.13076 * 1 2 3 26 26 H 1.09003 * 109.47566 * 50.13824 * 1 2 3 27 27 H 1.09003 * 109.46895 * 170.13620 * 1 2 3 28 28 H 1.09005 * 109.46762 * 295.00146 * 4 2 1 29 29 H 1.09000 * 109.46678 * 54.99496 * 4 2 1 30 30 H 1.09008 * 109.68332 * 249.21099 * 8 7 5 31 31 H 1.08996 * 109.68099 * 9.76385 * 8 7 5 32 32 H 1.08994 * 109.66378 * 292.57227 * 9 8 7 33 33 H 1.09006 * 109.48601 * 172.39899 * 9 8 7 34 34 H 1.09000 * 109.51270 * 302.65822 * 11 10 9 35 35 H 1.08999 * 109.55373 * 182.53259 * 11 10 9 36 36 H 1.08993 * 109.68237 * 350.23017 * 12 7 5 37 37 H 1.09001 * 109.68282 * 110.79325 * 12 7 5 38 38 H 1.08996 * 113.76128 * 23.26256 * 14 13 2 39 39 H 1.09004 * 113.75990 * 252.00344 * 14 13 2 40 40 H 1.09002 * 113.73561 * 90.68936 * 15 14 13 41 41 H 0.96993 * 119.99620 * 179.97438 * 19 18 16 42 42 H 1.08994 * 113.76018 * 108.13671 * 24 13 2 43 43 H 1.08995 * 113.85771 * 336.78130 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 8 4.1449 -0.0203 -0.4444 7 7 4.2150 -1.1806 -2.3340 8 6 3.5058 -1.9124 -3.3956 9 6 3.9862 -1.3731 -4.7524 10 8 5.4144 -1.4186 -4.7960 11 6 6.0562 -0.5954 -3.8191 12 6 5.6814 -1.0905 -2.4171 13 7 2.0196 -0.6923 1.1995 14 6 1.5995 0.0156 2.4290 15 6 1.2893 -1.3776 3.0057 16 6 0.0022 -1.4378 3.7871 17 1 -0.6042 -0.5510 3.8980 18 6 -0.4008 -2.6247 4.3615 19 7 0.3379 -3.7045 4.2269 20 14 -1.9959 -2.6991 5.3308 21 1 -3.1297 -2.3248 4.4477 22 1 -2.2011 -4.0785 5.8411 23 1 -1.9254 -1.7534 6.4735 24 6 1.1495 -1.8426 1.5449 25 1 -0.3634 0.3537 0.9648 26 1 -0.3634 0.6587 -0.7888 27 1 -0.3633 -1.0125 -0.1761 28 1 1.7517 -1.7716 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.7294 -2.9766 -3.3203 31 1 2.4319 -1.7545 -3.2959 32 1 3.6507 -0.3436 -4.8775 33 1 3.5777 -1.9890 -5.5537 34 1 5.7283 0.4370 -3.9408 35 1 7.1371 -0.6516 -3.9481 36 1 6.0490 -0.3880 -1.6692 37 1 6.1200 -2.0735 -2.2452 38 1 0.7175 0.6419 2.2955 39 1 2.4135 0.5307 2.9391 40 1 2.1284 -1.8307 3.5337 41 1 0.0545 -4.5394 4.6313 42 1 1.6052 -2.8128 1.3473 43 1 0.1355 -1.7615 1.1534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256335539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = -55.823516 kcal Electronic energy + Delta-G solvation = -23091.803741 eV Core-core repulsion = 19751.715842 eV Total energy + Delta-G solvation = -3340.087899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52022 -40.66391 -39.13086 -35.71940 -35.34319 -33.95473 -32.43043 -29.82322 -28.98144 -28.09717 -26.77016 -25.90102 -24.99260 -23.26813 -21.71329 -20.19202 -19.57914 -18.75364 -18.27374 -17.43877 -17.08294 -16.82163 -16.58390 -16.20439 -16.04588 -16.00886 -15.67168 -15.32692 -14.51894 -14.35696 -14.26705 -14.06727 -13.55385 -13.41638 -13.06209 -12.85575 -12.80293 -12.72466 -12.62892 -12.33189 -12.28632 -12.25148 -11.76950 -11.70739 -11.38859 -11.18898 -11.03104 -10.84604 -10.67777 -10.47764 -9.55564 -9.31617 -8.12342 -6.24440 1.43034 1.44968 1.52707 1.72667 1.92203 2.43502 2.88151 3.16665 3.28928 3.59080 3.75967 3.81654 4.01035 4.10708 4.14420 4.24509 4.28096 4.37403 4.40800 4.48878 4.51913 4.61032 4.64307 4.66096 4.69510 4.76822 4.78834 4.87056 4.90819 4.95102 5.10306 5.19103 5.31027 5.36084 5.47722 5.65677 5.70223 5.87563 6.11214 6.32724 6.36703 6.54388 6.84430 7.27140 7.43715 8.96936 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.003525 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.418664 B = 7940.981346 C = 7958.126191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 H 0.071 0.929 4 C -0.117 4.117 5 C 0.515 3.485 6 O -0.562 6.562 7 N -0.627 5.627 8 C 0.068 3.932 9 C 0.047 3.953 10 O -0.396 6.396 11 C 0.058 3.942 12 C 0.073 3.927 13 N -0.478 5.478 14 C 0.010 3.990 15 C 0.022 3.978 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.015 3.985 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.015 3.985 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.262 0.738 42 H 0.038 0.962 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 5.133 -21.162 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.052 4.052 3 H 0.089 0.911 4 C -0.157 4.157 5 C 0.305 3.695 6 O -0.440 6.440 7 N -0.363 5.363 8 C -0.055 4.055 9 C -0.030 4.030 10 O -0.314 6.314 11 C -0.019 4.019 12 C -0.050 4.050 13 N -0.201 5.201 14 C -0.119 4.119 15 C 0.003 3.997 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.184 4.184 19 N -0.562 5.562 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.976 5.066 -20.945 22.116 hybrid contribution -1.358 -0.129 1.305 1.888 sum 3.618 4.937 -19.640 20.572 Atomic orbital electron populations 1.22401 0.95408 1.02827 1.02768 1.21881 0.93777 0.98096 0.91410 0.91116 1.21681 0.90685 1.03527 0.99799 1.21051 0.91047 0.77438 0.79995 1.90695 1.70876 1.43712 1.38674 1.48321 1.07373 1.55374 1.25225 1.22768 0.99029 0.96816 0.86852 1.23241 0.80634 1.02228 0.96867 1.87940 1.19962 1.68041 1.55484 1.22986 0.99522 0.93711 0.85722 1.22284 0.80679 1.02628 0.99374 1.68774 1.44829 1.05512 1.00960 1.23920 0.98048 0.97639 0.92288 1.20216 0.95315 0.91594 0.92619 1.21375 1.06375 0.95646 1.33322 0.92242 1.25831 1.00328 0.95389 0.96881 1.70111 1.39628 1.00854 1.45648 0.85619 0.79965 0.76991 0.79126 1.18970 1.21151 1.19739 1.24075 0.95550 0.93380 0.98350 0.93081 0.89550 0.91769 0.88625 0.85172 0.90393 0.86637 0.91914 0.85077 0.92533 0.85828 0.89984 0.91043 0.91102 0.92505 0.96997 0.92947 0.94304 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.04 7.80 71.98 0.56 -4.47 16 2 C 0.06 1.90 1.96 44.91 0.09 1.98 16 3 H 0.07 2.41 7.95 -2.39 -0.02 2.39 16 4 C -0.12 -3.00 3.65 29.85 0.11 -2.89 16 5 C 0.52 15.76 7.57 87.66 0.66 16.42 16 6 O -0.56 -22.72 14.82 -3.04 -0.05 -22.76 16 7 N -0.63 -14.88 3.01 -816.46 -2.46 -17.34 16 8 C 0.07 1.04 6.57 86.49 0.57 1.61 16 9 C 0.05 0.59 7.00 72.22 0.51 1.10 16 10 O -0.40 -6.98 10.74 -148.98 -1.60 -8.58 16 11 C 0.06 0.96 6.99 72.10 0.50 1.46 16 12 C 0.07 1.63 6.64 86.37 0.57 2.20 16 13 N -0.48 -20.42 5.34 -879.27 -4.69 -25.11 16 14 C 0.01 0.44 7.29 86.41 0.63 1.07 16 15 C 0.02 1.15 3.61 -10.89 -0.04 1.11 16 16 C -0.53 -29.38 8.77 25.60 0.22 -29.15 16 17 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 18 C 0.01 0.83 5.46 84.65 0.46 1.29 16 19 N -0.92 -54.97 13.27 21.45 0.28 -54.69 16 20 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 C 0.02 0.71 6.96 86.34 0.60 1.31 16 25 H 0.05 1.70 5.97 -2.39 -0.01 1.68 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.85 6.40 -2.39 -0.02 1.84 16 28 H 0.10 2.43 7.80 -2.38 -0.02 2.41 16 29 H 0.13 2.16 7.67 -2.39 -0.02 2.15 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.12 1.30 6.05 -2.39 -0.01 1.29 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 2.15 7.08 -2.39 -0.02 2.13 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.99 5.97 -2.39 -0.01 2.97 16 39 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.01 0.72 8.13 -2.39 -0.02 0.70 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 3.47 4.95 -2.39 -0.01 3.45 16 Total: -1.00 -72.82 335.69 -0.04 -72.86 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.99 Total: 17.21 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.45 Total: -6.95 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -6.87 Total: -97.14 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.65 Total: -31.34 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.82 -0.04 -72.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256335539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.037 kcal (2) G-P(sol) polarization free energy of solvation -72.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds